Rh5DG427800

Cytochrome c oxidase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003458
Physical Location & Seq
Forward (+)
68246831 .. 68269856
23026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG427800.1

Sequence Viewer

Length: 228 bp
ATGTTCCAGTCTTGGCGTCAATTCCAATTCCAAAAGTTGGCCGCGATATACCCGCAGGATACACATAAATCAAATTCTGGGTCATCAGATTCCCTTGATAGCTTATTTGGTGACAAACATGCAAGCAGTGCTCTGGAGGAAGCACCTGCTATAGTCAAGTCCTACTATGACAAAAGAATAGTTGGATACCCTGGTGATGAAGGAGAGTTCTGTGATCAGTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042773 GO:0042775 GO:0042776 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046907 GO:0046914 GO:0050897 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

75

Amino Acids

8.45

Weight (kDa)

4.85

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 37
AccII CGCG 1 cut(s) 44
AciI CCGC 2 cut(s) 42, 53
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 37
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 133
AoxI GGCC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 73
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsuHPI GGTGA 2 cut(s) 122, 206
BaeI ACNNNNGTAYC 2 cut(s) 178, 211
Bbv12I GWGCWC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 2 cut(s) 52, 179
BclI TGATCA 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 154
BfuI GTATCC 2 cut(s) 52, 179
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 7
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 37
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 2 cut(s) 42, 53
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 214
BssNI GRCGYC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 124
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 1 cut(s) 44
BsuI GTATCC 2 cut(s) 52, 179
BsuRI GGCC 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 124
CseI GACGC 1 cut(s) 5
CviAII CATG 1 cut(s) 119
CviJI RGCY 2 cut(s) 41, 102
CviKI_1 RGCY 2 cut(s) 41, 102
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 49, 66, 120, 152, 168
FatI CATG 1 cut(s) 118
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 5
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 1 cut(s) 122
HinfI GANTC 1 cut(s) 89
HphI GGTGA 2 cut(s) 122, 206
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 7 cut(s) 20, 41, 63, 119, 159, 177, 204
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 3 cut(s) 20, 26, 73
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 1 cut(s) 130
MseI TTAA 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 122
PaqCI CACCTGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 226
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 133
SetI ASST 2 cut(s) 104, 148
SfcI CTRYAG 1 cut(s) 150
Sse9I AATT 3 cut(s) 20, 26, 73
SsiI CCGC 2 cut(s) 42, 53
StyD4I CCNGG 1 cut(s) 190
TasI AATT 3 cut(s) 20, 26, 73
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 37
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.