Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Reverse (-)

49208508 .. 49218682

Gene Structure 10175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG377900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTCCAATCTTGGCGTCAATTCCAATTCCAAAAGTTGGCCGTGATATACCCGCAGGATACGCAGAAATCAGATTCTGGGTCATCAAATTCCCTTGATAGCTTATTTGGTGACAAAGATGCAAGCAGTGCTCTGGAGGAAGCACCTGCTATAGTCAAGTCCTACTATGACAAAAGAATAGTTGGATGCCTTGGTGATGAAGGAGTTTCTGCTGGCAATGCTTCTATCATAATGTTGTTAATTGATGCCAATGCCTTGTGTTCTTTTAGATTGCTGGAGGGCTGGTTTTTCATTTTATATGCATGGGATGACAGCAAGCCTGCCATACAAATACTGGATGGTTTGCCATATGACATCATCCAGACCGGGTATCACAATGGTGGGTTTCGCTCAAGACTACCACTTGAGGAGCAGGAGAAATATCTTGGACGGCTGAAAAGAATTGAACAGTCCTTACACTCCTATCAGCGCACACATAAGGCAAGGTTTAACAAGCTTTTGGGTAAGAATGATGAAGGGTGTATACATCCTGTGCCTCCAATGATGACGCTCTATAAAGCATTCATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042773 GO:0042775 GO:0042776 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046907 GO:0046914 GO:0050897 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

190

Amino Acids

21.59

Weight (kDa)

6.9

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	446
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	102, 496
AluI	AGCT	2 cut(s)	102, 496
Alw21I	GWGCWC	1 cut(s)	133
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	122, 206
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	2 cut(s)	26, 446
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	3 cut(s)	109, 176, 235
BpmI	CTGGAG	2 cut(s)	155, 296
BpuEI	CTTGAG	2 cut(s)	376, 425
BpuMI	CCSGG	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	5 cut(s)	191, 313, 343, 357, 526
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	190
BssNAI	GTATAC	1 cut(s)	524
BssNI	GRCGYC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	190
Bst1107I	GTATAC	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	4 cut(s)	124, 214, 317, 321
BstF5I	GGATG	5 cut(s)	191, 313, 343, 357, 526
BstHHI	GCGC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 128, 218
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	150
BstZ17I	GTATAC	1 cut(s)	524
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	5 cut(s)	191, 313, 343, 357, 526
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	4 cut(s)	124, 214, 317, 321
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	471
CseI	GACGC	2 cut(s)	5, 556
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	6 cut(s)	41, 102, 282, 319, 433, 496
CviKI_1	RGCY	6 cut(s)	41, 102, 282, 319, 433, 496
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	306
FatI	CATG	1 cut(s)	302
FauI	CCCGC	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	523
FokI	GGATG	5 cut(s)	198, 320, 344, 350, 513
GlaI	GCGC	1 cut(s)	470
GsuI	CTGGAG	2 cut(s)	155, 296
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	2 cut(s)	5, 556
HhaI	GCGC	1 cut(s)	471
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	306
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	122, 206
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	73, 569
Hpy188III	TCNNGA	3 cut(s)	134, 361, 393
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	194, 509
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4V	TGCA	2 cut(s)	122, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 128, 218
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	306
HspAI	GCGC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	409
LweI	GCATC	3 cut(s)	109, 176, 235
MaeIII	GTNAC	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	5 cut(s)	20, 26, 88, 240, 441
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	130, 271, 400, 546
Mph1103I	ATGCAT	1 cut(s)	304
MseI	TTAA	2 cut(s)	239, 489
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	560
MwoI	GCNNNNNNNGC	3 cut(s)	61, 128, 218
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	349
NlaIII	CATG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	37
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PstNI	CAGNNNCTG	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	239, 489
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	4 cut(s)	104, 148, 488, 498
SfaNI	GCATC	3 cut(s)	109, 176, 235
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	391, 404
SmoI	CTYRAG	2 cut(s)	391, 404
Sse9I	AATT	5 cut(s)	20, 26, 88, 240, 441
SsiI	CCGC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	450
TasI	AATT	5 cut(s)	20, 26, 88, 240, 441
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	239, 489
Tru9I	TTAA	2 cut(s)	239, 489
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	213, 280, 528, 553
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	523
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.