RchiOBHm_Chr7g0179721

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003458
Physical Location & Seq
Forward (+)
1918987 .. 1921230
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16022

Sequence Viewer

Length: 606 bp
ATGCTTGTGTGTGGTTCGTTCTTCCTTGATCATCGAGAAGAAGCCGTTCTAGAAGCTTGGCCACTGTTGAAGTCGCTTTTAGAAGATTATGGCATTTCATGTACAATGTATCTGGCTGAGCGTTTCATGACATTATCAACAACCAGCGGGACTGAAGATCCAGATATTATTTACAAGGCTAGGGATGTTCTTGAACTTTTGTCATTAACTCGTGTTCCACCATCAATGGTAATGAAAGTACTGAATGAGAATCTGCAATATGACATCATCAAGACAGCGTATCGTAATGGTGGTTTTTGCTCACAATATAAGATTGACAGGAAGCTAATTAAGAAGCGGCGTGGACTACTTCGGCCCTACTTAAAGGAACTTGGGGTGCTGACGGGTTGTGAGATATATGTTGATGGATGCGCTGTTACTGCTATGGGTTTTAAGCGTCAAGGATTAAAGTTGGTCAGGATTGGCGTGAAAGAGTGCCTTGTTAACAATGTGAGACCGAAAACTATGCTTCGGAAGATGAAGTTGACCCTTGAAAGGATGAAAATGAAAGAGGAAATTACTGCCGGAGAATTTCCTCCTGTGGAATCTGCTGGGAACATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.94

Weight (kDa)

9.08

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 8 - 80 4.8e-13 Krr1 KH1 domain
KH_KRR1_2nd PF21800 106 - 173 2.7e-07 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 147, 337
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 2 cut(s) 103, 240
AfiI CCNNNNNNNGG 1 cut(s) 534
AgsI TTSAA 3 cut(s) 70, 194, 533
AluBI AGCT 2 cut(s) 56, 325
AluI AGCT 2 cut(s) 56, 325
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 1 cut(s) 152
AoxI GGCC 2 cut(s) 59, 353
ApoI RAATTY 1 cut(s) 569
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 61
BauI CACGAG 1 cut(s) 210
BccI CCATC 2 cut(s) 229, 398
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 2 cut(s) 50, 180
BisI GCNGC 1 cut(s) 338
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 339
BmcAI AGTACT 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 354
BmsI GCATC 1 cut(s) 398
Bpu1102I GCTNAGC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 534
BseGI GGATG 3 cut(s) 190, 413, 543
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 590
BshFI GGCC 2 cut(s) 61, 355
BsiSI CCGG 1 cut(s) 564
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 61, 355
Bso31I GGTCTC 1 cut(s) 487
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 2 cut(s) 28, 157
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 147, 337
BspANI GGCC 2 cut(s) 61, 355
BspCNI CTCAG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 126
BspPI GGATC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 487
BsrGI TGTACA 1 cut(s) 101
BssMI GATC 2 cut(s) 28, 157
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 190, 413, 543
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 2 cut(s) 31, 160
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 2 cut(s) 28, 157
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 2 cut(s) 61, 355
BtsCI GGATG 3 cut(s) 190, 413, 543
BtsIMutI CAGTG 1 cut(s) 62
CciI TCATGA 1 cut(s) 126
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 354
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 102, 239
CviAII CATG 3 cut(s) 99, 127, 598
CviJI RGCY 7 cut(s) 44, 56, 61, 116, 179, 325, 355
CviKI_1 RGCY 7 cut(s) 44, 56, 61, 116, 179, 325, 355
CviQI GTAC 2 cut(s) 102, 239
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 30, 159
DpnII GATC 2 cut(s) 28, 157
EaeI YGGCCR 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 603
FaeI CATG 3 cut(s) 102, 130, 601
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 163
FatI CATG 3 cut(s) 98, 126, 597
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 338
FokI GGATG 3 cut(s) 197, 420, 550
Fsp4HI GCNGC 1 cut(s) 338
FspBI CTAG 2 cut(s) 50, 180
GlaI GCGC 1 cut(s) 412
GluI GCNGC 1 cut(s) 338
GsaI CCCAGC 1 cut(s) 594
HaeIII GGCC 2 cut(s) 61, 355
HapII CCGG 1 cut(s) 564
HgaI GACGC 1 cut(s) 425
HhaI GCGC 1 cut(s) 413
Hin1II CATG 3 cut(s) 102, 130, 601
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HincII GTYRAC 2 cut(s) 484, 525
HindII GTYRAC 2 cut(s) 484, 525
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 2 cut(s) 250, 584
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 1 cut(s) 564
Hpy166II GTNNAC 3 cut(s) 344, 484, 525
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 7 cut(s) 35, 50, 127, 161, 191, 271, 457
Hpy8I GTNNAC 3 cut(s) 344, 484, 525
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 256, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 3 cut(s) 102, 130, 601
HspAI GCGC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 28
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 28, 157
LpnPI CCDG 8 cut(s) 98, 157, 174, 304, 442, 576, 577, 591
LweI GCATC 1 cut(s) 398
MaeI CTAG 2 cut(s) 50, 180
MaeIII GTNAC 1 cut(s) 415
MalI GATC 2 cut(s) 30, 159
MboI GATC 2 cut(s) 28, 157
MboII GAAGA 5 cut(s) 13, 50, 95, 167, 526
MflI RGATCY 1 cut(s) 157
MlsI TGGCCA 1 cut(s) 61
MluCI AATT 3 cut(s) 327, 555, 569
MluNI TGGCCA 1 cut(s) 61
MnlI CCTC 2 cut(s) 544, 585
Mox20I TGGCCA 1 cut(s) 61
Mph1103I ATGCAT 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 45
MscI TGGCCA 1 cut(s) 61
MseI TTAA 7 cut(s) 206, 330, 362, 432, 446, 483, 604
Msp20I TGGCCA 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 419
NdeII GATC 2 cut(s) 28, 157
NlaIII CATG 3 cut(s) 102, 130, 601
NsiI ATGCAT 1 cut(s) 603
NspI RCATGY 1 cut(s) 601
PagI TCATGA 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 250, 584
PkrI GCNGC 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 590
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 2 cut(s) 103, 240
RsaNI GTAC 2 cut(s) 102, 239
SaqAI TTAA 7 cut(s) 206, 330, 362, 432, 446, 483, 604
SatI GCNGC 1 cut(s) 338
Sau3AI GATC 2 cut(s) 28, 157
Sau96I GGNCC 1 cut(s) 354
ScaI AGTACT 1 cut(s) 240
SetI ASST 2 cut(s) 58, 327
SfaNI GCATC 1 cut(s) 398
Sse9I AATT 3 cut(s) 327, 555, 569
SsiI CCGC 2 cut(s) 147, 337
SspMI CTAG 2 cut(s) 50, 180
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 34
TaqII GACCGA 1 cut(s) 511
TasI AATT 3 cut(s) 327, 555, 569
TatI WGTACW 2 cut(s) 101, 238
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 2 cut(s) 250, 584
Tru1I TTAA 7 cut(s) 206, 330, 362, 432, 446, 483, 604
Tru9I TTAA 7 cut(s) 206, 330, 362, 432, 446, 483, 604
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 6 cut(s) 87, 115, 248, 533, 554, 560
TspRI CASTG 1 cut(s) 69
XapI RAATTY 1 cut(s) 569
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 2 cut(s) 50, 180
ZrmI AGTACT 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.