Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005898.1

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

51917 .. 54675

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005898.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggtgggtttcgctgaagactaccacttgaggagcaggagaaatatcttggacggcagaaaagaattgaacactccttacagggacgttgtggaagcctgcattgtaagaaatgtgaagcctgcaactctgttcaggttgatgaactttagtcatcaattgggtggacagtcggacaatcttgagatggatgtattagggtttgaaacagtaacgaaaagaaaacggacggaggagaagagaaagaatgatgttcatgttgtcatgtccgagccaacagcagctgcgatggaggggcagcatggagaatcgtcggatccattggacaaagccctgttcggcccttcgttgaacaaagctggcatgctcgtctgtggtgccttcttctctgaaaagcgagccaaagtattggaagaagaatggcccattgtggaatcatccttggaacagtatggcatttcatgcacaatttatctggatgagggtttcatgacattctcaacaactaaggatcgagatactatttacaaggctagagatgttcttgaacttctgtcatcgacttctgttaagccctcactggcaatagaagtactgaatggcaggctgaagcatgatatcatcaagactgggtattttaatggtgggattggttcagaattgaagattgataaggagacgttcgttaagcagactggacttttcaaagcctctttacaggatgttgctgatgtgtcgcattgttatatttataccaatgcaagttacctcccttttgtgattcggaggtttggcattcctgatcgtagcagctctgatgaagttggaattttgaatctgataatatctaatttacgtgttaatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.49

Weight (kDa)

5.95

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AclWI	GGATC	3 cut(s)	311, 324, 519
AcsI	RAATTY	1 cut(s)	828
AcuI	CTGAAG	2 cut(s)	36, 629
AfaI	GTAC	1 cut(s)	594
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	7 cut(s)	70, 206, 352, 548, 664, 706, 835
AluBI	AGCT	3 cut(s)	284, 359, 813
AluI	AGCT	3 cut(s)	284, 359, 813
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	3 cut(s)	311, 324, 519
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	340, 422
ApeKI	GCWGC	4 cut(s)	281, 284, 298, 810
ApoI	RAATTY	1 cut(s)	828
AspS9I	GGNCC	2 cut(s)	341, 423
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	271, 293, 310, 822
BccI	CCATC	2 cut(s)	181, 283
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	1 cut(s)	534
BisI	GCNGC	4 cut(s)	282, 285, 299, 811
BlsI	GCNGC	4 cut(s)	283, 286, 300, 812
BmcAI	AGTACT	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	341, 423
BmiI	GGNNCC	2 cut(s)	318, 379
BmrI	ACTGGG	1 cut(s)	639
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	49, 203
BsaAI	YACGTR	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	441
Bse1I	ACTGG	3 cut(s)	585, 634, 700
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	4 cut(s)	196, 437, 484, 727
BseNI	ACTGG	3 cut(s)	585, 634, 700
BseRI	GAGGAG	2 cut(s)	46, 248
BseXI	GCAGC	4 cut(s)	271, 293, 310, 822
BshFI	GGCC	2 cut(s)	342, 424
BshNI	GGYRCC	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	671
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	342, 424
Bsp143I	GATC	3 cut(s)	316, 511, 802
BspANI	GGCC	2 cut(s)	342, 424
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	318, 379
BspPI	GGATC	3 cut(s)	311, 324, 519
BspT107I	GGYRCC	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	585, 634, 700
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	3 cut(s)	316, 511, 802
BssT1I	CCWWGG	1 cut(s)	441
Bst4CI	ACNGT	3 cut(s)	171, 211, 450
Bst6I	CTCTTC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	462
BstBAI	YACGTR	1 cut(s)	857
BstC8I	GCNNGC	6 cut(s)	100, 123, 361, 365, 399, 605
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	4 cut(s)	196, 437, 484, 727
BstKTI	GATC	3 cut(s)	319, 514, 805
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	3 cut(s)	316, 511, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	367
BstV1I	GCAGC	4 cut(s)	271, 293, 310, 822
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	342, 424
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	4 cut(s)	196, 437, 484, 727
BtsIMutI	CAGTG	1 cut(s)	578
Cac8I	GCNNGC	6 cut(s)	100, 123, 361, 365, 399, 605
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	341, 423
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	7 cut(s)	257, 265, 302, 364, 462, 490, 614
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	3 cut(s)	318, 513, 804
DpnII	GATC	3 cut(s)	316, 511, 802
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	441
Eco32I	GATATC	1 cut(s)	619
Eco57I	CTGAAG	2 cut(s)	36, 629
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	7 cut(s)	260, 268, 305, 367, 465, 493, 617
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	7 cut(s)	256, 264, 301, 363, 461, 489, 613
Fnu4HI	GCNGC	4 cut(s)	282, 285, 299, 811
FokI	GGATG	4 cut(s)	203, 424, 491, 734
Fsp4HI	GCNGC	4 cut(s)	282, 285, 299, 811
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	4 cut(s)	282, 285, 299, 811
HaeIII	GGCC	2 cut(s)	342, 424
Hin1II	CATG	7 cut(s)	260, 268, 305, 367, 465, 493, 617
HinfI	GANTC	4 cut(s)	308, 434, 781, 835
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	8 cut(s)	175, 271, 316, 391, 658, 786, 817, 840
Hpy188III	TCNNGA	7 cut(s)	182, 476, 490, 515, 545, 625, 800
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	354, 391
HpyCH4III	ACNGT	3 cut(s)	171, 211, 450
HpyCH4IV	ACGT	3 cut(s)	87, 680, 856
HpyCH4V	TGCA	4 cut(s)	102, 125, 465, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	462
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	3 cut(s)	87, 680, 856
Hsp92II	CATG	7 cut(s)	260, 268, 305, 367, 465, 493, 617
Kzo9I	GATC	3 cut(s)	316, 511, 802
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	4 cut(s)	271, 293, 310, 822
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	3 cut(s)	87, 680, 856
MaeIII	GTNAC	2 cut(s)	211, 764
MalI	GATC	3 cut(s)	318, 513, 804
MboI	GATC	3 cut(s)	316, 511, 802
MboII	GAAGA	6 cut(s)	29, 250, 376, 425, 428, 676
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	6 cut(s)	65, 158, 468, 659, 828, 850
MmeI	TCCRAC	3 cut(s)	153, 294, 805
MnlI	CCTC	8 cut(s)	24, 226, 286, 475, 586, 721, 779, 780
MseI	TTAA	4 cut(s)	570, 639, 687, 861
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	795
MwoI	GCNNNNNNNGC	1 cut(s)	462
NdeII	GATC	3 cut(s)	316, 511, 802
NlaIII	CATG	7 cut(s)	260, 268, 305, 367, 465, 493, 617
NlaIV	GGNNCC	2 cut(s)	318, 379
NspI	RCATGY	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	489
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	4 cut(s)	308, 434, 781, 835
PkrI	GCNGC	4 cut(s)	283, 286, 300, 812
Ppu21I	YACGTR	1 cut(s)	857
PspN4I	GGNNCC	2 cut(s)	318, 379
PspPI	GGNCC	2 cut(s)	341, 423
PsrI	GAACNNNNNNTAC	2 cut(s)	62, 94
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SaqAI	TTAA	4 cut(s)	570, 639, 687, 861
SatI	GCNGC	4 cut(s)	282, 285, 299, 811
Sau3AI	GATC	3 cut(s)	316, 511, 802
Sau96I	GGNCC	2 cut(s)	341, 423
ScaI	AGTACT	1 cut(s)	594
SetI	ASST	9 cut(s)	90, 140, 286, 361, 683, 771, 791, 815, 859
SmlI	CTYRAG	2 cut(s)	28, 182
SmoI	CTYRAG	2 cut(s)	28, 182
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	6 cut(s)	65, 158, 468, 659, 828, 850
SspMI	CTAG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	171, 211, 450
TaiI	ACGT	3 cut(s)	90, 683, 859
TaqI	TCGA	2 cut(s)	514, 560
TasI	AATT	6 cut(s)	65, 158, 468, 659, 828, 850
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	4 cut(s)	308, 434, 781, 835
Tru1I	TTAA	4 cut(s)	570, 639, 687, 861
Tru9I	TTAA	4 cut(s)	570, 639, 687, 861
TscAI	CASTG	1 cut(s)	585
TseI	GCWGC	4 cut(s)	281, 284, 298, 810
TspDTI	ATGAA	5 cut(s)	158, 245, 450, 478, 834
TspGWI	ACGGA	2 cut(s)	241, 245
TspRI	CASTG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	828
XceI	RCATGY	1 cut(s)	367
XspI	CTAG	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.