Rh1AG145400

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003458
Physical Location & Seq
Reverse (-)
27508783 .. 27509927
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG145400.1

Sequence Viewer

Length: 390 bp
ATGACATTCTCAACAACTAAGGATCGAGATACTATTTACAAGGCTAGAGATGTTCTTGAACTTCTGTCATCGACTTCTGTTAAGCCCTCACTGGTACTTGATGCGAATTTTTCTCCCAATGCAATAGAAGTACTGAATGGCAGGCTGAAGCATGATATCATCAAGACTGGGTATTTTAATGGTGGGATTGGTTCAGAATTGAAGATTGATAAGGAGACGTTCGTTAAGCAGACTGGACTTTTCAAAGCCTCTTTACAGGGAAACACTGTTGCTGCTCTGGCGACTGAAAATGGACGATTAAGCTTGGTCAGGGAAGTGGTTACACGCTGCATTGCTAGCAATGAGGATCCAGCAAGTATGATCCAGGAGTTTAAAAGAACAAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.21

Weight (kDa)

9.13

Isoelectric Point (pI)

19.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 30, 341, 354, 355
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 2 cut(s) 96, 132
AgsI TTSAA 3 cut(s) 59, 202, 244
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 4 cut(s) 30, 341, 354, 355
ApeKI GCWGC 2 cut(s) 272, 327
ApoI RAATTY 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 335
BamHI GGATCC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 259, 314
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 2 cut(s) 45, 336
BisI GCNGC 2 cut(s) 273, 328
BlsI GCNGC 2 cut(s) 274, 329
BmcAI AGTACT 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 365
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 91
BmtI GCTAGC 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 177
Bse1I ACTGG 3 cut(s) 96, 172, 238
Bse3DI GCAATG 2 cut(s) 330, 346
BseBI CCWGG 1 cut(s) 365
BseMI GCAATG 2 cut(s) 330, 346
BseNI ACTGG 3 cut(s) 96, 172, 238
BseXI GCAGC 2 cut(s) 259, 314
BsmAI GTCTC 1 cut(s) 209
BsmBI CGTCTC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 22, 346, 360
BspLI GGNNCC 1 cut(s) 348
BspOI GCTAGC 1 cut(s) 339
BspPI GGATC 4 cut(s) 30, 341, 354, 355
BsrDI GCAATG 2 cut(s) 330, 346
BsrI ACTGG 3 cut(s) 96, 172, 238
BssMI GATC 3 cut(s) 22, 346, 360
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 143, 337
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 3 cut(s) 25, 349, 363
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 3 cut(s) 22, 346, 360
BstMWI GCNNNNNNNGC 2 cut(s) 278, 336
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 259, 314
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 89, 264
Cac8I GCNNGC 2 cut(s) 143, 337
Csp6I GTAC 2 cut(s) 95, 131
CviAII CATG 1 cut(s) 152
CviJI RGCY 5 cut(s) 44, 85, 145, 248, 303
CviKI_1 RGCY 5 cut(s) 44, 85, 145, 248, 303
CviQI GTAC 2 cut(s) 95, 131
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 24, 348, 362
DpnII GATC 3 cut(s) 22, 346, 360
DraI TTTAAA 1 cut(s) 373
Eco32I GATATC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 363
EcoRV GATATC 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 1 cut(s) 155
FaiI YATR 2 cut(s) 153, 359
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 273, 328
Fsp4HI GCNGC 2 cut(s) 273, 328
FspBI CTAG 2 cut(s) 45, 336
GluI GCNGC 2 cut(s) 273, 328
Hin1II CATG 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 26, 56, 163
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 122, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 336
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 3 cut(s) 22, 346, 360
Lsp1109I GCAGC 2 cut(s) 259, 314
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 45, 336
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 24, 348, 362
MboI GATC 3 cut(s) 22, 346, 360
MboII GAAGA 1 cut(s) 214
MflI RGATCY 1 cut(s) 346
MluCI AATT 2 cut(s) 106, 197
MnlI CCTC 3 cut(s) 97, 259, 337
MseI TTAA 5 cut(s) 81, 177, 225, 299, 372
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 278, 336
NdeII GATC 3 cut(s) 22, 346, 360
NheI GCTAGC 1 cut(s) 335
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 2 cut(s) 274, 329
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 2 cut(s) 96, 132
RsaNI GTAC 2 cut(s) 95, 131
SaqAI TTAA 5 cut(s) 81, 177, 225, 299, 372
SatI GCNGC 2 cut(s) 273, 328
Sau3AI GATC 3 cut(s) 22, 346, 360
ScaI AGTACT 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 365
SetI ASST 2 cut(s) 221, 305
SfaNI GCATC 1 cut(s) 91
Sse9I AATT 2 cut(s) 106, 197
SspMI CTAG 2 cut(s) 45, 336
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 25, 71
TasI AATT 2 cut(s) 106, 197
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 5 cut(s) 81, 177, 225, 299, 372
Tru9I TTAA 5 cut(s) 81, 177, 225, 299, 372
TscAI CASTG 2 cut(s) 96, 271
TseI GCWGC 2 cut(s) 272, 327
TspRI CASTG 2 cut(s) 96, 271
XapI RAATTY 1 cut(s) 106
XspI CTAG 2 cut(s) 45, 336
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.