Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Reverse (-)

65274366 .. 65286035

Gene Structure 11670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGTTTACATAGTTGCAAACCTTGAAAAAAAAAAAAAAAGGTTTGCAGGGGCCAAAGAGCAAACCTTGTCATACAGCAAATATGTTGAACGGAACCACATGCTATCTTGCAAACCCGGAGAATGGAGACTGAAACGACTCGTATTATCAACCTATACATTTAAGGTTTGGACACAATTTGATGATAGTAAAGACTTTTCTGTTATGCTGATGGACTTTACTTGGGGTGAAGATTACTACGTGATTCACCAATGTCGCAGCTGCGAATCTTTGGAACATTGTGTGGGGGTATATATCCTAGCATCACAAGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTCAAGAAGACGCAGCGGGATTAGAGAAGAAGCCGTTCTAGAAGCTTGGCCACTGTTGAAGTCACTTCTAGAAGATTATGGCATTTCATGTACAATGTATCTGGCCGAGCGTTTCATGACATTATCAACAACCAGCGGGACTGAAGATCCAGATATTATTTACAAGGCTAGGGATGTTCTTGAACTTTTGTCATTAACTCGTGTTCCACCATCAATGGTAATGAAAGTACTGAATGAGAATCTGCAATATGGCATCATCAAGACTGCGTATCGTAACGGTGGTTTTTGCTCACAATATAAGATTGACAGGAAGCTAATTAAGAAGCGGCGTGGACTACTTCGGCCCTACTTAAAGGAACTTGGGGTGCTGACGGGTTGTGAGATATATGTTGATGGATGCGCTGTTACTGCTATGGGTTTTAAGCGTCAAGGATTAAAGTTGGTCAGGATTGGCGTGGAAGAGTGCCTTGTTAACAATGTGAGACCTAAAACTATGCTTCGGAAGATGAAGTTGACCCTTGAAAGGATGAAAATGAAAGAGGAAATTACTGCCGGAGAATTTCCTCCTGTGGAATCTGCTGGGAACATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

36.46

Weight (kDa)

8.9

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	128 - 186	7.5e-11	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	222 - 289	5.2e-07	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	332, 375, 495, 685
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	2 cut(s)	407, 462
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	1 cut(s)	522
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	451, 588
AfiI	CCNNNNNNNGG	2 cut(s)	123, 882
AgsI	TTSAA	5 cut(s)	26, 89, 418, 542, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	3 cut(s)	261, 404, 673
AluI	AGCT	3 cut(s)	261, 404, 673
Alw26I	GTCTC	2 cut(s)	121, 835
AlwI	GGATC	1 cut(s)	500
AoxI	GGCC	4 cut(s)	51, 407, 462, 701
ApeKI	GCWGC	3 cut(s)	258, 261, 372
ApoI	RAATTY	1 cut(s)	917
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	2 cut(s)	51, 702
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	4 cut(s)	239, 239, 323, 353
BalI	TGGCCA	1 cut(s)	409
BauI	CACGAG	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	248, 270, 384
BccI	CCATC	4 cut(s)	205, 332, 577, 746
BceAI	ACGGC	1 cut(s)	377
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	121, 835
BfaI	CTAG	4 cut(s)	299, 398, 428, 528
BisI	GCNGC	4 cut(s)	259, 262, 373, 686
BlsI	GCNGC	4 cut(s)	260, 263, 374, 687
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	51, 702
BmiI	GGNNCC	2 cut(s)	52, 95
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	311, 621, 746
BpiI	GAAGAC	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 882
BseGI	GGATG	3 cut(s)	538, 761, 891
BseLI	CCNNNNNNNGG	2 cut(s)	123, 882
BseXI	GCAGC	3 cut(s)	248, 270, 384
BseYI	CCCAGC	1 cut(s)	938
BshFI	GGCC	4 cut(s)	53, 409, 464, 703
BsiSI	CCGG	2 cut(s)	117, 912
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	123, 882
BsmAI	GTCTC	2 cut(s)	121, 835
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	4 cut(s)	53, 409, 464, 703
Bso31I	GGTCTC	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	449
Bsp143I	GATC	2 cut(s)	313, 505
BspACI	CCGC	4 cut(s)	332, 375, 495, 685
BspANI	GGCC	4 cut(s)	53, 409, 464, 703
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	52, 95
BspPI	GGATC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	835
BsrGI	TGTACA	1 cut(s)	449
BssMI	GATC	2 cut(s)	313, 505
BssSI	CACGAG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	414, 638
Bst6I	CTCTTC	1 cut(s)	813
BstAUI	TGTACA	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	538, 761, 891
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	2 cut(s)	316, 508
BstMAI	GTCTC	2 cut(s)	121, 835
BstMBI	GATC	2 cut(s)	313, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNSI	RCATGY	2 cut(s)	103, 949
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	248, 270, 384
BstV2I	GAAGAC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	53, 409, 464, 703
BtsCI	GGATG	3 cut(s)	538, 761, 891
BtsIMutI	CAGTG	1 cut(s)	410
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	761
Cfr13I	GGNCC	2 cut(s)	51, 702
CseI	GACGC	2 cut(s)	378, 773
Csp6I	GTAC	2 cut(s)	450, 587
CviAII	CATG	4 cut(s)	100, 447, 475, 946
CviQI	GTAC	2 cut(s)	450, 587
DpnI	GATC	2 cut(s)	315, 507
DpnII	GATC	2 cut(s)	313, 505
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	407, 462
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
EciI	GGCGGA	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	835
Eco57I	CTGAAG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	951
FaeI	CATG	4 cut(s)	103, 450, 478, 949
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	4 cut(s)	99, 446, 474, 945
FauI	CCCGC	2 cut(s)	368, 488
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	259, 262, 373, 686
FokI	GGATG	3 cut(s)	545, 768, 898
Fsp4HI	GCNGC	4 cut(s)	259, 262, 373, 686
FspBI	CTAG	4 cut(s)	299, 398, 428, 528
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	4 cut(s)	259, 262, 373, 686
GsaI	CCCAGC	1 cut(s)	942
HaeIII	GGCC	4 cut(s)	53, 409, 464, 703
HapII	CCGG	2 cut(s)	117, 912
HgaI	GACGC	2 cut(s)	378, 773
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	4 cut(s)	103, 450, 478, 949
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HincII	GTYRAC	2 cut(s)	832, 873
HindII	GTYRAC	2 cut(s)	832, 873
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	6 cut(s)	138, 244, 266, 344, 598, 932
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	2 cut(s)	117, 912
HphI	GGTGA	4 cut(s)	239, 239, 323, 353
Hpy166II	GTNNAC	4 cut(s)	7, 692, 832, 873
Hpy188I	TCNGA	1 cut(s)	861
Hpy188III	TCNNGA	8 cut(s)	363, 398, 428, 475, 509, 539, 619, 805
Hpy8I	GTNNAC	4 cut(s)	7, 692, 832, 873
HpyCH4III	ACNGT	2 cut(s)	414, 638
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	5 cut(s)	17, 47, 111, 604, 949
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	103, 450, 478, 949
HspAI	GCGC	1 cut(s)	759
Ksp22I	TGATCA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	2 cut(s)	313, 505
Lsp1109I	GCAGC	3 cut(s)	248, 270, 384
LweI	GCATC	3 cut(s)	311, 621, 746
MaeI	CTAG	4 cut(s)	299, 398, 428, 528
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	420, 632, 763
MalI	GATC	2 cut(s)	315, 507
MboI	GATC	2 cut(s)	313, 505
MboII	GAAGA	7 cut(s)	242, 378, 398, 443, 515, 830, 874
MflI	RGATCY	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	4 cut(s)	176, 675, 903, 917
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	892, 933
Mox20I	TGGCCA	1 cut(s)	409
Mph1103I	ATGCAT	1 cut(s)	951
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	8 cut(s)	162, 554, 678, 710, 780, 794, 831, 952
Msp20I	TGGCCA	1 cut(s)	409
MspA1I	CMGCKG	3 cut(s)	261, 375, 495
MspI	CCGG	2 cut(s)	117, 912
MspR9I	CCNGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	767
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	313, 505
NlaIII	CATG	4 cut(s)	103, 450, 478, 949
NlaIV	GGNNCC	2 cut(s)	52, 95
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	951
NspI	RCATGY	2 cut(s)	103, 949
PagI	TCATGA	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	5 cut(s)	244, 266, 344, 598, 932
PkrI	GCNGC	4 cut(s)	260, 263, 374, 687
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	938
PspN4I	GGNNCC	2 cut(s)	52, 95
PspPI	GGNCC	2 cut(s)	51, 702
PsuI	RGATCY	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	261
RsaI	GTAC	2 cut(s)	451, 588
RsaNI	GTAC	2 cut(s)	450, 587
SaqAI	TTAA	8 cut(s)	162, 554, 678, 710, 780, 794, 831, 952
SatI	GCNGC	4 cut(s)	259, 262, 373, 686
Sau3AI	GATC	2 cut(s)	313, 505
Sau96I	GGNCC	2 cut(s)	51, 702
ScaI	AGTACT	1 cut(s)	588
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	311, 621, 746
Sse9I	AATT	4 cut(s)	176, 675, 903, 917
SsiI	CCGC	4 cut(s)	332, 375, 495, 685
SspMI	CTAG	4 cut(s)	299, 398, 428, 528
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	414, 638
TaiI	ACGT	1 cut(s)	243
TasI	AATT	4 cut(s)	176, 675, 903, 917
TatI	WGTACW	2 cut(s)	449, 586
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	5 cut(s)	244, 266, 344, 598, 932
Tru1I	TTAA	8 cut(s)	162, 554, 678, 710, 780, 794, 831, 952
Tru9I	TTAA	8 cut(s)	162, 554, 678, 710, 780, 794, 831, 952
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	3 cut(s)	258, 261, 372
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	6 cut(s)	435, 463, 596, 881, 902, 908
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	917
XbaI	TCTAGA	2 cut(s)	397, 427
XceI	RCATGY	2 cut(s)	103, 949
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	4 cut(s)	299, 398, 428, 528
ZrmI	AGTACT	1 cut(s)	588
Zsp2I	ATGCAT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.