Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003458

Physical Location & Seq

Genomic Coordinates Forward (+)

1858379 .. 1865341

Gene Structure 6963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG026200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAGATCTGCGGCGACAAATGGAAGTCATCGGACGATATGAGGGCGGTGTTGTCCCGTCCGTCACTCGCATCACGGTTTTCGTTTGGCGAAAGAGTTCCGTCGTGGCTGCACGCAACGACCTTTTCGCCGAGAAAAATAACAACAGAAGGGGCGGCGATGGAGTCGAAGACGCCGTTGAACAAGGATGGCATGGTTGCTTTCACCTCCTTCTCTTCCAGGTTTTATCCTGGACGAGCAAAAGTGTTGGCAGAAGAATGGCCCATGGTGGAGTCGGCCTTGGGAGAGTATGGCATGTCATGCAAACTCGATTGGGATGAGAGGCCATACAGATACTGGATGGCAGGCTGCATTGTGACATCATCTGGACTGCCAATTGTTATGGTGGTCGATCTTCTCTCTAAACTTTCGTTTAAGAGTAAGGGGCAATATTTTACACGGATGAATAATATTCAGCGCAACATGGAGGGCCTTGCATCTGTATCCGGTTGCTCCCTCTTCTTTAATGGATTTTCTGTCACTGCAATTAGCACAATACCTGAAGGACTATTGACGGTCAGGGGTATTGTGAAATCCTGCATTGTTAAAGGTCAGAATCCTGGAACTGCTGTCAGGTTGTTGAAATTGTTTCAAGAAAGGAATGGACAGACAGAGAATCTCGAGATGGATGCTTACGGGTTCAAAACTGCTCCTGGAGCAAAACTGAGAATCTTGAAGCGATTAGATGGGAACCCATTGGTTGACCAGAAAAATTCGGAGCTTACCCTGACTAGGGGGGATGATGTCGGGGAACTGAAGCAATCGATTGAGAACCCGCGAGTTGAACACAAAAAATCGGAGGATGACCCAACACCAGAAGTCGATCAGACGGAGTTTTTGTTATTTGGCCCTTCGTTGAACAAAGATGGAATGCTTGTGTGTGGTTCGCTCTTCCTTGAACATCGAGGTCCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.35

Weight (kDa)

8.14

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003458)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00670 FvH4_2g01170
rosa_chinensis	RchiOBHm_Chr7g0179721 RchiOBHm_Chr7g0191051
rosa_laevigata	RLG00000004479 RLG00000005327
rosa_multiflora	Rmu_sc0005329.1_g000038 Rmu_sc0005898.1_g000016 Rmu_sc0026930.1_g000001
rosa_roxburghii	Rroxscaffold_155G00443780 Rroxscaffold_1G00036880 Rroxscaffold_3G00264090 Rroxscaffold_3G00264100 Rroxscaffold_3G00273420 Rroxscaffold_3G00273520
rosa_rugosa	Rorug06G0427500 Rorug06G0427600 Rorug06G0508400
rosa_samantha	Rh1AG145300 Rh1AG145400 Rh1DG151900 Rh5DG372600 Rh5DG427800 Rh7AG027100 Rh7AG377900 Rh7BG026200 Rh7BG118000 Rh7CG028200 Rh7CG120400 Rh7CG120500 Rh7CG397100 Rh7DG027800 Rh7DG119200 Rh7DG119900
rosa_wichuraiana	Rw7G002180 Rw7G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	817
AciI	CCGC	4 cut(s)	12, 47, 155, 815
AcsI	RAATTY	1 cut(s)	751
AcuI	CTGAAG	2 cut(s)	561, 815
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	771, 772
AgsI	TTSAA	8 cut(s)	181, 622, 632, 682, 715, 824, 898, 938
AjnI	CCWGG	4 cut(s)	218, 229, 598, 691
AluBI	AGCT	1 cut(s)	760
AluI	AGCT	1 cut(s)	760
AlwNI	CAGNNNCTG	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	5 cut(s)	260, 276, 323, 469, 886
ApeKI	GCWGC	2 cut(s)	109, 348
ApoI	RAATTY	1 cut(s)	751
ArsI	GACNNNNNNTTYG	2 cut(s)	859, 891
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	4 cut(s)	261, 469, 887, 947
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	947
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	96, 335
BccI	CCATC	6 cut(s)	154, 182, 334, 658, 719, 899
BceAI	ACGGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	4 cut(s)	220, 231, 600, 693
BciVI	GTATCC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	4 cut(s)	13, 110, 156, 349
BlsI	GCNGC	4 cut(s)	14, 111, 157, 350
Bme1390I	CCNGG	4 cut(s)	220, 231, 600, 693
Bme18I	GGWCC	1 cut(s)	947
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	4 cut(s)	261, 469, 887, 947
BmiI	GGNNCC	1 cut(s)	731
BmrFI	CCNGG	4 cut(s)	220, 231, 600, 693
BmsI	GCATC	3 cut(s)	80, 485, 658
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	714
Bsa29I	ATCGAT	1 cut(s)	803
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	264, 279
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	863, 893
Bsc4I	CCNNNNNNNGG	2 cut(s)	771, 772
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	4 cut(s)	220, 231, 600, 693
BseCI	ATCGAT	1 cut(s)	803
BseDI	CCNNGG	2 cut(s)	264, 279
BseGI	GGATG	7 cut(s)	193, 322, 345, 447, 673, 784, 847
BseLI	CCNNNNNNNGG	2 cut(s)	771, 772
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	96, 335
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	817
BshFI	GGCC	5 cut(s)	262, 278, 325, 471, 888
BshVI	ATCGAT	1 cut(s)	803
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	771, 772
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	5 cut(s)	262, 278, 325, 471, 888
BsoBI	CYCGRG	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	6, 391, 862
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	4 cut(s)	12, 47, 155, 815
BspANI	GGCC	5 cut(s)	262, 278, 325, 471, 888
BspCNI	CTCAG	1 cut(s)	696
BspDI	ATCGAT	1 cut(s)	803
BspFNI	CGCG	1 cut(s)	817
BspLI	GGNNCC	1 cut(s)	731
BspQI	GCTCTTC	1 cut(s)	935
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	264, 279
BssMI	GATC	3 cut(s)	6, 391, 862
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	2 cut(s)	264, 279
Bst2UI	CCWGG	4 cut(s)	220, 231, 600, 693
Bst4CI	ACNGT	2 cut(s)	78, 556
Bst6I	CTCTTC	3 cut(s)	220, 503, 935
BstACI	GRCGYC	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	114, 346
BstDEI	CTNAG	1 cut(s)	704
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	7 cut(s)	193, 322, 345, 447, 673, 784, 847
BstFNI	CGCG	1 cut(s)	817
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	3 cut(s)	9, 394, 865
BstMBI	GATC	3 cut(s)	6, 391, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 695
BstNI	CCWGG	4 cut(s)	220, 231, 600, 693
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	4 cut(s)	218, 229, 598, 691
BstUI	CGCG	1 cut(s)	817
BstV1I	GCAGC	2 cut(s)	96, 335
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	803
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	5 cut(s)	262, 278, 325, 471, 888
BsuTUI	ATCGAT	1 cut(s)	803
BtgI	CCRYGG	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	7 cut(s)	193, 322, 345, 447, 673, 784, 847
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	114, 346
CaiI	CAGNNNCTG	1 cut(s)	336
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	4 cut(s)	261, 469, 887, 947
ClaI	ATCGAT	1 cut(s)	803
CseI	GACGC	1 cut(s)	181
CviAII	CATG	5 cut(s)	193, 265, 295, 300, 463
CviJI	RGCY	8 cut(s)	109, 262, 278, 325, 348, 471, 760, 888
CviKI_1	RGCY	8 cut(s)	109, 262, 278, 325, 348, 471, 760, 888
DdeI	CTNAG	1 cut(s)	704
DpnI	GATC	3 cut(s)	8, 393, 864
DpnII	GATC	3 cut(s)	6, 391, 862
Eam1104I	CTCTTC	3 cut(s)	220, 503, 935
EarI	CTCTTC	3 cut(s)	220, 503, 935
Eco130I	CCWWGG	2 cut(s)	264, 279
Eco47I	GGWCC	1 cut(s)	947
Eco57I	CTGAAG	2 cut(s)	561, 815
Eco88I	CYCGRG	1 cut(s)	659
EcoO109I	RGGNCCY	2 cut(s)	469, 947
EcoRII	CCWGG	4 cut(s)	218, 229, 598, 691
EcoT14I	CCWWGG	2 cut(s)	264, 279
ErhI	CCWWGG	2 cut(s)	264, 279
FaeI	CATG	5 cut(s)	196, 268, 298, 303, 466
FaiI	YATR	9 cut(s)	41, 194, 266, 291, 296, 301, 328, 383, 464
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	5 cut(s)	192, 264, 294, 299, 462
FauI	CCCGC	1 cut(s)	822
Fnu4HI	GCNGC	4 cut(s)	13, 110, 156, 349
FokI	GGATG	7 cut(s)	200, 329, 352, 454, 680, 791, 854
Fsp4HI	GCNGC	4 cut(s)	13, 110, 156, 349
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	4 cut(s)	13, 110, 156, 349
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	5 cut(s)	262, 278, 325, 471, 888
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	459
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	196, 268, 298, 303, 466
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	5 cut(s)	164, 272, 595, 655, 708
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	5 cut(s)	34, 594, 757, 838, 867
Hpy188III	TCNNGA	5 cut(s)	366, 632, 659, 661, 712
Hpy8I	GTNNAC	1 cut(s)	742
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	4 cut(s)	143, 220, 536, 900
HpyCH4III	ACNGT	2 cut(s)	78, 556
HpyCH4V	TGCA	6 cut(s)	112, 303, 351, 476, 524, 579
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 695
HpyF3I	CTNAG	1 cut(s)	704
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	5 cut(s)	196, 268, 298, 303, 466
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	6, 391, 862
LguI	GCTCTTC	1 cut(s)	935
LmnI	GCTCC	4 cut(s)	497, 694, 695, 757
Lsp1109I	GCAGC	2 cut(s)	96, 335
LweI	GCATC	3 cut(s)	80, 485, 658
MaeI	CTAG	1 cut(s)	771
MaeIII	GTNAC	3 cut(s)	63, 355, 517
MalI	GATC	3 cut(s)	8, 393, 864
MboI	GATC	3 cut(s)	6, 391, 862
MboII	GAAGA	6 cut(s)	181, 207, 266, 386, 490, 922
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	4 cut(s)	375, 525, 623, 751
MlyI	GAGTC	2 cut(s)	173, 281
MnlI	CCTC	7 cut(s)	36, 217, 315, 460, 506, 832, 938
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	3 cut(s)	414, 504, 585
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	4 cut(s)	220, 231, 600, 693
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	4 cut(s)	220, 231, 600, 693
MvnI	CGCG	1 cut(s)	817
MwoI	GCNNNNNNNGC	2 cut(s)	300, 695
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	6, 391, 862
NlaIII	CATG	5 cut(s)	196, 268, 298, 303, 466
NlaIV	GGNNCC	1 cut(s)	731
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	3 cut(s)	63, 355, 517
NspI	RCATGY	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	935
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	595, 655, 708
PfoI	TCCNGGA	3 cut(s)	229, 598, 691
PkrI	GCNGC	4 cut(s)	14, 111, 157, 350
PleI	GAGTC	2 cut(s)	172, 280
PpsI	GAGTC	2 cut(s)	172, 280
PpuMI	RGGWCCY	1 cut(s)	947
Psp5II	RGGWCCY	1 cut(s)	947
Psp6I	CCWGG	4 cut(s)	218, 229, 598, 691
PspGI	CCWGG	4 cut(s)	218, 229, 598, 691
PspN4I	GGNNCC	1 cut(s)	731
PspPI	GGNCC	4 cut(s)	261, 469, 887, 947
PspPPI	RGGWCCY	1 cut(s)	947
PstNI	CAGNNNCTG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	935
SaqAI	TTAA	3 cut(s)	414, 504, 585
SatI	GCNGC	4 cut(s)	13, 110, 156, 349
Sau3AI	GATC	3 cut(s)	6, 391, 862
Sau96I	GGNCC	4 cut(s)	261, 469, 887, 947
SchI	GAGTC	2 cut(s)	173, 281
ScrFI	CCNGG	4 cut(s)	220, 231, 600, 693
SetI	ASST	8 cut(s)	125, 209, 224, 541, 592, 617, 762, 949
SfaNI	GCATC	3 cut(s)	80, 485, 658
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	1 cut(s)	947
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	4 cut(s)	375, 525, 623, 751
SsiI	CCGC	4 cut(s)	12, 47, 155, 815
SspI	AATATT	2 cut(s)	431, 451
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	4 cut(s)	218, 229, 598, 691
StyI	CCWWGG	2 cut(s)	264, 279
TaaI	ACNGT	2 cut(s)	78, 556
TaqI	TCGA	7 cut(s)	167, 309, 390, 660, 803, 861, 943
TasI	AATT	4 cut(s)	375, 525, 623, 751
TauI	GCSGC	2 cut(s)	15, 158
TfiI	GAWTC	3 cut(s)	595, 655, 708
Tru1I	TTAA	3 cut(s)	414, 504, 585
Tru9I	TTAA	3 cut(s)	414, 504, 585
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	3 cut(s)	63, 355, 517
TseI	GCWGC	2 cut(s)	109, 348
Tsp45I	GTSAC	3 cut(s)	63, 355, 517
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	4 cut(s)	51, 90, 454, 884
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	947
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.