Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002857

Physical Location & Seq

Genomic Coordinates Forward (+)

2286410 .. 2289775

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02941.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCCGTACGGGTTTTCTGTACGGATTTCCGCCGTTTCTCCACCATTCCAACGCCAGCGACGCCATTTCTTCTCCCCTGCGTGATCCCAGACCTGCCCCGACGGTGTTGGAATGAAGAAGTAGGCCGGAGAGATTGCGATCGGAGGTCTGTGCAGCAATCTCACTCAGAACTTCACGACCGATCATGGTGGACCTCCGATCGCGATCTCTCTGGCCTTCTTCTTCATTCTAACACCATCGGGAGAGGTCTGAGATCAAGCCGGAGAGAAGAAACGGCGTCGCTGACGCTGGAATGGTGGAGAAACGGCGGAAATCCGTGTTCCGAAACAAATAAGAAGAAAAGAAGGAAAAGAGGGAGTGGAAGGCAAAATTCAGAAATCTGCCTTTGCAGATCAGCCTACTTCGACAGAGCACTGAGGGCAGCTAAGGATGAATCAGATCATGAGCCTCATACCATTAGAAAGCTACGGATGTCAACTTTCCGTAGCATTTTACGGTTCGTGAATAGCATTTTTCTAGAAGAAGTTATGGCCGATTTAGTGTCAGAAGGTCAAACTGCGCCTGAATCTGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2

Protein Analysis

193

Amino Acids

22.28

Weight (kDa)

9.32

Isoelectric Point (pI)

76.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02941
rosa_chinensis	RchiOBHm_Chr1g0327601 RchiOBHm_Chr1g0328211 RchiOBHm_Chr1g0328421 RchiOBHm_Chr1g0369921 RchiOBHm_Chr1g0371671 RchiOBHm_Chr1g0382031 RchiOBHm_Chr2g0130721 RchiOBHm_Chr2g0141321 RchiOBHm_Chr4g0401261 RchiOBHm_Chr4g0435071 RchiOBHm_Chr5g0030411 RchiOBHm_Chr5g0036821 RchiOBHm_Chr5g0070441 RchiOBHm_Chr6g0268181 RchiOBHm_Chr7g0222111
rosa_multiflora	Rmu_sc0003249.1_g000016 Rmu_sc0009671.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095380 Rroxscaffold_2G00095630 Rroxscaffold_2G00110260 Rroxscaffold_2G00116450 Rroxscaffold_2G00117310 Rroxscaffold_3G00224120 Rroxscaffold_3G00275380 Rroxscaffold_4G00308610 Rroxscaffold_5G00338190 Rroxscaffold_5G00358130 Rroxscaffold_6G00389220 Rroxscaffold_7G00176840 Rroxscaffold_7G00198260
rosa_rugosa	Rorug03G0282500 Rorug05G0003200 Rorug06G0002200 Rorug07G0046500 Rorug07G0046600
rosa_samantha	Rh4AG337700 Rh4CG049400 Rh4DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	31, 309
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	370
AcyI	GRCGYC	2 cut(s)	62, 278
AfaI	GTAC	2 cut(s)	9, 22
AluBI	AGCT	2 cut(s)	425, 466
AluI	AGCT	2 cut(s)	425, 466
Alw21I	GWGCWC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	3 cut(s)	124, 214, 531
ApeKI	GCWGC	2 cut(s)	154, 422
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	166, 434
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	3 cut(s)	18, 291, 322
BfaI	CTAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	102
BisI	GCNGC	2 cut(s)	155, 423
BlsI	GCNGC	2 cut(s)	156, 424
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	426
BsaBI	GATNNNNATC	2 cut(s)	138, 204
BsaHI	GRCGYC	2 cut(s)	62, 278
Bse8I	GATNNNNATC	2 cut(s)	138, 204
BseGI	GGATG	2 cut(s)	436, 477
BseJI	GATNNNNATC	2 cut(s)	138, 204
BseMII	CTCAG	3 cut(s)	180, 242, 407
BseXI	GCAGC	2 cut(s)	166, 434
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	3 cut(s)	142, 181, 202
BshFI	GGCC	3 cut(s)	126, 216, 533
BsiEI	CGRYCG	3 cut(s)	142, 181, 202
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	127, 262
BsiWI	CGTACG	1 cut(s)	7
BsnI	GGCC	3 cut(s)	126, 216, 533
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
Bsp68I	TCGCGA	1 cut(s)	204
BspACI	CCGC	2 cut(s)	31, 309
BspANI	GGCC	3 cut(s)	126, 216, 533
BspCNI	CTCAG	3 cut(s)	179, 243, 408
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	79
BssMI	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
BssNI	GRCGYC	2 cut(s)	62, 278
Bst4CI	ACNGT	2 cut(s)	105, 498
BstACI	GRCGYC	2 cut(s)	62, 278
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	166, 251, 416, 426
BstF5I	GGATG	2 cut(s)	436, 477
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	8 cut(s)	87, 142, 185, 202, 208, 257, 395, 442
BstMBI	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
BstMCI	CGRYCG	3 cut(s)	142, 181, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 419
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	166, 434
BsuRI	GGCC	3 cut(s)	126, 216, 533
BtsCI	GGATG	2 cut(s)	436, 477
BtsIMutI	CAGTG	1 cut(s)	413
BtuMI	TCGCGA	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	3 cut(s)	70, 267, 295
Csp6I	GTAC	2 cut(s)	8, 21
CviAII	CATG	2 cut(s)	186, 443
CviJI	RGCY	8 cut(s)	126, 216, 261, 398, 425, 448, 466, 533
CviKI_1	RGCY	8 cut(s)	126, 216, 261, 398, 425, 448, 466, 533
CviQI	GTAC	2 cut(s)	8, 21
DdeI	CTNAG	4 cut(s)	166, 251, 416, 426
DpnI	GATC	8 cut(s)	86, 141, 184, 201, 207, 256, 394, 441
DpnII	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
EaeI	YGGCCR	1 cut(s)	531
EciI	GGCGGA	2 cut(s)	20, 324
Eco47I	GGWCC	1 cut(s)	192
FaeI	CATG	2 cut(s)	189, 446
FaiI	YATR	4 cut(s)	187, 444, 453, 530
FatI	CATG	2 cut(s)	185, 442
Fnu4HI	GCNGC	2 cut(s)	155, 423
FokI	GGATG	2 cut(s)	443, 484
Fsp4HI	GCNGC	2 cut(s)	155, 423
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	2 cut(s)	155, 423
HaeIII	GGCC	3 cut(s)	126, 216, 533
HapII	CCGG	2 cut(s)	127, 262
HgaI	GACGC	3 cut(s)	70, 267, 295
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	2 cut(s)	62, 278
Hin1II	CATG	2 cut(s)	189, 446
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	2 cut(s)	434, 566
HpaII	CCGG	2 cut(s)	127, 262
Hpy166II	GTNNAC	2 cut(s)	192, 477
Hpy188I	TCNGA	9 cut(s)	144, 169, 199, 252, 325, 376, 439, 547, 571
Hpy188III	TCNNGA	6 cut(s)	176, 203, 241, 443, 502, 518
Hpy8I	GTNNAC	2 cut(s)	192, 477
Hpy99I	CGWCG	3 cut(s)	64, 105, 283
HpyAV	CCTTC	4 cut(s)	227, 339, 357, 542
HpyCH4III	ACNGT	2 cut(s)	105, 498
HpyCH4V	TGCA	2 cut(s)	154, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 419
HpyF3I	CTNAG	4 cut(s)	166, 251, 416, 426
Hsp92I	GRCGYC	2 cut(s)	62, 278
Hsp92II	CATG	2 cut(s)	189, 446
HspAI	GCGC	1 cut(s)	560
Kzo9I	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
LpnPI	CCDG	8 cut(s)	69, 91, 102, 107, 140, 198, 275, 275
Lsp1109I	GCAGC	2 cut(s)	166, 434
MaeI	CTAG	1 cut(s)	518
MalI	GATC	8 cut(s)	86, 141, 184, 201, 207, 256, 394, 441
MboI	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
MboII	GAAGA	7 cut(s)	62, 128, 212, 215, 281, 349, 533
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	74, 89
MnlI	CCTC	6 cut(s)	138, 205, 239, 347, 411, 459
MspI	CCGG	2 cut(s)	127, 262
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	61, 419
NdeII	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
NlaIII	CATG	2 cut(s)	189, 446
NruI	TCGCGA	1 cut(s)	204
PagI	TCATGA	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	434, 566
Pfl23II	CGTACG	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	156, 424
Ple19I	CGATCG	2 cut(s)	142, 202
PspLI	CGTACG	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	192
PvuI	CGATCG	2 cut(s)	142, 202
RruI	TCGCGA	1 cut(s)	204
RsaI	GTAC	2 cut(s)	9, 22
RsaNI	GTAC	2 cut(s)	8, 21
SatI	GCNGC	2 cut(s)	155, 423
Sau3AI	GATC	8 cut(s)	84, 139, 182, 199, 205, 254, 392, 439
Sau96I	GGNCC	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	8 cut(s)	96, 149, 197, 250, 427, 468, 553, 576
SinI	GGWCC	1 cut(s)	192
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	2 cut(s)	31, 309
SspMI	CTAG	1 cut(s)	518
TaaI	ACNGT	2 cut(s)	105, 498
TaqI	TCGA	1 cut(s)	405
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	434, 566
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	2 cut(s)	154, 422
TspDTI	ATGAA	3 cut(s)	129, 215, 447
TspGWI	ACGGA	4 cut(s)	38, 306, 473, 484
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	517
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.