RchiOBHm_Chr1g0328211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002857
Physical Location & Seq
Reverse (-)
17578652 .. 17579046
395 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55765

Sequence Viewer

Length: 192 bp
ATGATTATATTTAAGAATGCTGGGCCTCTGATTGTAGGCACCTTCATTGTTCTTGTGCACTTCAACTCTATATTTCTCTTCTTTTTCTCCCCTCTTCAGCTTAAGGAGCATGTTGAACTTGGCATGATCTTCTATCACCTGCTCCACACAATTTTAACACGAGGGAGTAATCAATCAGTCTTTCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.28

Weight (kDa)

8.33

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 80
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 64, 116
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 60
Alw44I GTGCAC 1 cut(s) 56
AoxI GGCC 1 cut(s) 23
ApaLI GTGCAC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 60
BfrI CTTAAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 101
BssMI GATC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 83, 99
BstAFI CTTAAG 1 cut(s) 101
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 25
BveI ACCTGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 3 cut(s) 110, 124, 187
CviJI RGCY 2 cut(s) 25, 100
CviKI_1 RGCY 2 cut(s) 25, 100
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 83, 99
EarI CTCTTC 2 cut(s) 83, 99
Eco57I CTGAAG 1 cut(s) 80
FaeI CATG 3 cut(s) 113, 127, 190
FaiI YATR 5 cut(s) 8, 71, 111, 125, 188
FatI CATG 3 cut(s) 109, 123, 186
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 3 cut(s) 113, 127, 190
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 3 cut(s) 113, 127, 190
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 106, 147
LpnPI CCDG 2 cut(s) 6, 152
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 3 cut(s) 70, 86, 121
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 150
MnlI CCTC 3 cut(s) 36, 102, 155
MseI TTAA 3 cut(s) 12, 102, 155
MspCI CTTAAG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 1 cut(s) 126
NlaIII CATG 3 cut(s) 113, 127, 190
NlaIV GGNNCC 1 cut(s) 40
NspI RCATGY 1 cut(s) 113
PaqCI CACCTGC 1 cut(s) 147
PctI GAATGC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 12, 102, 155
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 60
SetI ASST 3 cut(s) 44, 102, 141
SgeI CNNG 8 cut(s) 33, 65, 122, 131, 136, 151, 171, 173
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 1 cut(s) 150
TasI AATT 1 cut(s) 150
Tru1I TTAA 3 cut(s) 12, 102, 155
Tru9I TTAA 3 cut(s) 12, 102, 155
TspDTI ATGAA 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 101
VneI GTGCAC 1 cut(s) 56
XceI RCATGY 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.