RchiOBHm_Chr1g0382031

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
67079956 .. 67080657
702 bp
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UTR
Exon/CDS
Intron
PRQ60509

Sequence Viewer

Length: 183 bp
ATGTCTAGTTTCCAGTTCTTTTTACGGCTCATCAATATCATTTTTCTAGAAGAAGTTATGGCCGATTTAGTACAAGAAGGTCAGGCTGCACGTGAATCTGAGGTTGGACGGGAATTTATGTTTCGAAGCCCAAATCACACCGAAAAGCCCGAGGACGAGTTTTTGCATCATATTCTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

7.11

Weight (kDa)

4.79

Isoelectric Point (pI)

75.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 113
AcvI CACGTG 1 cut(s) 92
AfaI GTAC 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 92
BbvI GCAGC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 41
BfaI CTAG 2 cut(s) 6, 47
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 149
BmsI GCATC 1 cut(s) 175
Bpu14I TTCGAA 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 149
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 124
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 124
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 5 cut(s) 28, 62, 86, 129, 148
CviKI_1 RGCY 5 cut(s) 28, 62, 86, 129, 148
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 60
Eco72I CACGTG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 149
FaiI YATR 3 cut(s) 59, 119, 171
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 6, 47
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 62
HinfI GANTC 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 100, 177
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 89, 166
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 91
LpnPI CCDG 2 cut(s) 26, 68
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 6, 47
MaeII ACGT 1 cut(s) 91
MboII GAAGA 1 cut(s) 62
MluCI AATT 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 2 cut(s) 94, 145
MseI TTAA 1 cut(s) 181
NspV TTCGAA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 92
PspCI CACGTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 181
SatI GCNGC 1 cut(s) 87
SetI ASST 3 cut(s) 82, 94, 105
SfaNI GCATC 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 124
Sse9I AATT 1 cut(s) 113
SspMI CTAG 2 cut(s) 6, 47
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TseI GCWGC 1 cut(s) 86
XapI RAATTY 1 cut(s) 113
XbaI TCTAGA 1 cut(s) 46
XspI CTAG 2 cut(s) 6, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.