Rorug07G0046600

methyltransferase DDB_G0268948

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
3386508 .. 3387477
970 bp
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UTR
Exon/CDS
Intron
Rorug07G0046600.1

Sequence Viewer

Length: 387 bp
ATGGGGAGCTCTTATGAGTTTTCAAGAAATGGTAACAAAGATGTTTCACTTCAAGAACTGAGAGACAGGCTTGCTGAGTTTGCTCAAGTTAGAGGTTGGGAGCAATACCACAGTCCTAGAAATCTCCTTCTAGCACTAGTTGGAGAGGTTGGAGAGCTGTCTGAGATCTTCCAGTGGAAAGGTGAAGTTGCAAGAGGGCTACCAGACTGGAGCTCTGATGACAAAGAGCATTTAGAAGAAGAGATTTCTGATGTGCTACTCTATCTGATCCAGCTCGCCGATGTTTGCGGCCTTGATCTTGGACAAGCAGCACTCAGTAAGATTGTCAAGAATGCTAGGAAGTACCCAGTTACCAACCAAACACCAGCTGCAGCTTCAACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.31

Weight (kDa)

4.78

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG PF03819 38 - 116 2.3e-07 MazG nucleotide pyrophosphohydrolase domain
MazG-like PF12643 49 - 120 1.2e-09 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 262
AfaI GTAC 1 cut(s) 344
AgsI TTSAA 3 cut(s) 24, 53, 378
AhlI ACTAGT 1 cut(s) 136
AluBI AGCT 6 cut(s) 9, 157, 213, 274, 368, 374
AluI AGCT 6 cut(s) 9, 157, 213, 274, 368, 374
Alw21I GWGCWC 2 cut(s) 11, 215
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 3 cut(s) 308, 368, 371
AsuHPI GGTGA 1 cut(s) 194
BanII GRGCYC 2 cut(s) 11, 215
Bbv12I GWGCWC 2 cut(s) 11, 215
BbvI GCAGC 3 cut(s) 320, 355, 383
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 5 cut(s) 117, 131, 137, 336, 385
BfmI CTRYAG 1 cut(s) 369
BglII AGATCT 1 cut(s) 165
BisI GCNGC 4 cut(s) 289, 309, 369, 372
BlsI GCNGC 4 cut(s) 290, 310, 370, 373
BmrI ACTGGG 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 69
Bse1I ACTGG 3 cut(s) 172, 212, 347
BseMII CTCAG 4 cut(s) 50, 66, 153, 328
BseNI ACTGG 3 cut(s) 172, 212, 347
BseXI GCAGC 3 cut(s) 320, 355, 383
BshFI GGCC 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 11, 215
BsmAI GTCTC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 11, 215
Bsp143I GATC 3 cut(s) 165, 267, 295
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 4 cut(s) 51, 67, 154, 327
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 262
BsrI ACTGG 3 cut(s) 172, 212, 347
BssMI GATC 3 cut(s) 165, 267, 295
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 72, 276
BstDEI CTNAG 4 cut(s) 59, 75, 162, 314
BstKTI GATC 3 cut(s) 168, 270, 298
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 3 cut(s) 165, 267, 295
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 320, 355, 383
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 72, 276
Csp6I GTAC 1 cut(s) 343
CviJI RGCY 9 cut(s) 9, 70, 157, 199, 213, 274, 291, 368, 374
CviKI_1 RGCY 9 cut(s) 9, 70, 157, 199, 213, 274, 291, 368, 374
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 4 cut(s) 59, 75, 162, 314
DpnI GATC 3 cut(s) 167, 269, 297
DpnII GATC 3 cut(s) 165, 267, 295
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 2 cut(s) 9, 213
Eco24I GRGCYC 2 cut(s) 11, 215
Eco53kI GAGCTC 2 cut(s) 9, 213
EcoICRI GAGCTC 2 cut(s) 9, 213
EcoT38I GRGCYC 2 cut(s) 11, 215
FaiI YATR 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 289, 309, 369, 372
FriOI GRGCYC 2 cut(s) 11, 215
Fsp4HI GCNGC 4 cut(s) 289, 309, 369, 372
FspBI CTAG 5 cut(s) 117, 131, 137, 336, 385
GluI GCNGC 4 cut(s) 289, 309, 369, 372
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 291
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 4 cut(s) 163, 217, 250, 267
Hpy188III TCNNGA 3 cut(s) 24, 53, 328
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 191, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 4 cut(s) 59, 75, 162, 314
Kzo9I GATC 3 cut(s) 165, 267, 295
LmnI GCTCC 3 cut(s) 6, 100, 210
LpnPI CCDG 7 cut(s) 52, 185, 193, 216, 284, 360, 378
Lsp1109I GCAGC 3 cut(s) 320, 355, 383
MaeI CTAG 5 cut(s) 117, 131, 137, 336, 385
MaeIII GTNAC 2 cut(s) 32, 349
MalI GATC 3 cut(s) 167, 269, 297
MboI GATC 3 cut(s) 165, 267, 295
MboII GAAGA 3 cut(s) 160, 248, 251
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 11, 215
MmeI TCCRAC 2 cut(s) 121, 130
MnlI CCTC 3 cut(s) 86, 139, 188
MspA1I CMGCKG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 165, 267, 295
PctI GAATGC 1 cut(s) 337
PkrI GCNGC 4 cut(s) 290, 310, 370, 373
Psp124BI GAGCTC 2 cut(s) 11, 215
PstI CTGCAG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SacI GAGCTC 2 cut(s) 11, 215
SatI GCNGC 4 cut(s) 289, 309, 369, 372
Sau3AI GATC 3 cut(s) 165, 267, 295
SduI GDGCHC 2 cut(s) 11, 215
SetI ASST 9 cut(s) 11, 97, 150, 159, 184, 215, 276, 370, 376
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 136
SsiI CCGC 1 cut(s) 288
SspMI CTAG 5 cut(s) 117, 131, 137, 336, 385
SstI GAGCTC 2 cut(s) 11, 215
TaaI ACNGT 1 cut(s) 113
TauI GCSGC 1 cut(s) 291
TscAI CASTG 1 cut(s) 179
TseI GCWGC 3 cut(s) 308, 368, 371
TspRI CASTG 1 cut(s) 179
XspI CTAG 5 cut(s) 117, 131, 137, 336, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.