Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002857

Physical Location & Seq

Genomic Coordinates Reverse (-)

17025633 .. 17028398

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTAGATCGGGATCGGATTCCGCCGAGGAACTGCGTGGGCACGATTGTGTTCGGTAGATTTTGTGAGGAGGACGGGGTTGTCGAAGCGGCGGCTGCGCCGCCGAGTGTTGGCGGCGTGGGCGATGGATCGTGGTGGAAAGATATGTGTGGGCTCATTGGGTTAGGCCTTTGGTTTACCCTACTCTTTGGGCCTCGCATTTGGAGTGGATGGGTTTGTATGGGCCTTGATCCGGTCCGTGTGGCCGGATGGATTGGATTACTGAGAGCAGCTCAGGATGATCCAGATAATGATCTTTATATTGAAAGAAAGCCTCGGATGTCTAGTTTCCAAAGCTTTTTACGGTTCATGAATAACATTTTTCTAGAAGAAGTTATTACTGATTTAGTACAAGGAGGTCAGACTGCACGCGAATTTGAGTTGAAAGAAGGAAAGATTGTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.5

Weight (kDa)

4.74

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02941
rosa_chinensis	RchiOBHm_Chr1g0327601 RchiOBHm_Chr1g0328211 RchiOBHm_Chr1g0328421 RchiOBHm_Chr1g0369921 RchiOBHm_Chr1g0371671 RchiOBHm_Chr1g0382031 RchiOBHm_Chr2g0130721 RchiOBHm_Chr2g0141321 RchiOBHm_Chr4g0401261 RchiOBHm_Chr4g0435071 RchiOBHm_Chr5g0030411 RchiOBHm_Chr5g0036821 RchiOBHm_Chr5g0070441 RchiOBHm_Chr6g0268181 RchiOBHm_Chr7g0222111
rosa_multiflora	Rmu_sc0003249.1_g000016 Rmu_sc0009671.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095380 Rroxscaffold_2G00095630 Rroxscaffold_2G00110260 Rroxscaffold_2G00116450 Rroxscaffold_2G00117310 Rroxscaffold_3G00224120 Rroxscaffold_3G00275380 Rroxscaffold_4G00308610 Rroxscaffold_5G00338190 Rroxscaffold_5G00358130 Rroxscaffold_6G00389220 Rroxscaffold_7G00176840 Rroxscaffold_7G00198260
rosa_rugosa	Rorug03G0282500 Rorug05G0003200 Rorug06G0002200 Rorug07G0046500 Rorug07G0046600
rosa_samantha	Rh4AG337700 Rh4CG049400 Rh4DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccII	CGCG	1 cut(s)	411
AciI	CCGC	5 cut(s)	23, 89, 92, 101, 114
AclWI	GGATC	4 cut(s)	21, 136, 224, 275
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	110, 232
AgsI	TTSAA	2 cut(s)	305, 424
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	272, 336
AluI	AGCT	2 cut(s)	272, 336
AlwI	GGATC	4 cut(s)	21, 136, 224, 275
AoxI	GGCC	4 cut(s)	166, 191, 223, 243
ApeKI	GCWGC	2 cut(s)	95, 269
ApoI	RAATTY	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	191, 223, 235
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	82, 281
BccI	CCATC	3 cut(s)	119, 204, 243
BfaI	CTAG	4 cut(s)	5, 324, 365, 445
BisI	GCNGC	6 cut(s)	90, 93, 96, 101, 115, 270
BlsI	GCNGC	6 cut(s)	91, 94, 97, 102, 116, 271
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	3 cut(s)	191, 223, 235
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
Bpu10I	CCTNAGC	1 cut(s)	273
BsaBI	GATNNNNATC	2 cut(s)	12, 291
BsaJI	CCNNGG	2 cut(s)	26, 314
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 232
Bse8I	GATNNNNATC	2 cut(s)	12, 291
BseDI	CCNNGG	2 cut(s)	26, 314
BseGI	GGATG	4 cut(s)	215, 254, 283, 324
BseJI	GATNNNNATC	2 cut(s)	12, 291
BseLI	CCNNNNNNNGG	2 cut(s)	110, 232
BseMII	CTCAG	2 cut(s)	254, 287
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	82, 281
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	168, 193, 225, 245
BsiSI	CCGG	2 cut(s)	233, 246
BslI	CCNNNNNNNGG	2 cut(s)	110, 232
BsnI	GGCC	4 cut(s)	168, 193, 225, 245
Bsp1286I	GDGCHC	2 cut(s)	44, 156
Bsp143I	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
BspACI	CCGC	5 cut(s)	23, 89, 92, 101, 114
BspANI	GGCC	4 cut(s)	168, 193, 225, 245
BspCNI	CTCAG	2 cut(s)	255, 286
BspFNI	CGCG	1 cut(s)	411
BspHI	TCATGA	1 cut(s)	348
BspPI	GGATC	4 cut(s)	21, 136, 224, 275
BssECI	CCNNGG	2 cut(s)	26, 314
BssMI	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
Bst4CI	ACNGT	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	263, 273
BstF5I	GGATG	4 cut(s)	215, 254, 283, 324
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	6 cut(s)	10, 16, 131, 232, 283, 295
BstMBI	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 120
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	82, 281
BsuRI	GGCC	4 cut(s)	168, 193, 225, 245
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	4 cut(s)	215, 254, 283, 324
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	191, 223, 235
CpoI	CGGWCCG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	389
CspI	CGGWCCG	1 cut(s)	235
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	9 cut(s)	95, 154, 168, 193, 225, 245, 272, 313, 336
CviKI_1	RGCY	9 cut(s)	95, 154, 168, 193, 225, 245, 272, 313, 336
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	263, 273
DpnI	GATC	6 cut(s)	9, 15, 130, 231, 282, 294
DpnII	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	352
FaiI	YATR	4 cut(s)	146, 221, 300, 350
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	6 cut(s)	90, 93, 96, 101, 115, 270
FokI	GGATG	4 cut(s)	222, 261, 290, 331
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	6 cut(s)	90, 93, 96, 101, 115, 270
FspBI	CTAG	4 cut(s)	5, 324, 365, 445
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	6 cut(s)	90, 93, 96, 101, 115, 270
HaeIII	GGCC	4 cut(s)	168, 193, 225, 245
HapII	CCGG	2 cut(s)	233, 246
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	233, 246
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	3 cut(s)	18, 318, 402
Hpy188III	TCNNGA	5 cut(s)	11, 275, 284, 349, 365
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 120
HpyF3I	CTNAG	2 cut(s)	263, 273
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
LpnPI	CCDG	4 cut(s)	246, 259, 260, 297
Lsp1109I	GCAGC	2 cut(s)	82, 281
MaeI	CTAG	4 cut(s)	5, 324, 365, 445
MalI	GATC	6 cut(s)	9, 15, 130, 231, 282, 294
MboI	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
MboII	GAAGA	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	44, 156
MluCI	AATT	1 cut(s)	413
MnlI	CCTC	6 cut(s)	21, 61, 64, 204, 324, 389
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	233, 246
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	95, 120
NdeII	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
NlaIII	CATG	1 cut(s)	352
NmeAIII	GCCGAG	2 cut(s)	51, 129
OliI	CACNNNNGTG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	6 cut(s)	91, 94, 97, 102, 116, 271
PspPI	GGNCC	3 cut(s)	191, 223, 235
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	47
Rsr2I	CGGWCCG	1 cut(s)	235
RsrII	CGGWCCG	1 cut(s)	235
SatI	GCNGC	6 cut(s)	90, 93, 96, 101, 115, 270
Sau3AI	GATC	6 cut(s)	7, 13, 128, 229, 280, 292
Sau96I	GGNCC	3 cut(s)	191, 223, 235
SduI	GDGCHC	2 cut(s)	44, 156
SetI	ASST	3 cut(s)	274, 338, 400
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	413
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	5 cut(s)	23, 89, 92, 101, 114
SspMI	CTAG	4 cut(s)	5, 324, 365, 445
StuI	AGGCCT	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	413
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	4 cut(s)	92, 95, 103, 117
TfiI	GAWTC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	95, 269
TspDTI	ATGAA	2 cut(s)	337, 365
TspGWI	ACGGA	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	413
XbaI	TCTAGA	1 cut(s)	364
XspI	CTAG	4 cut(s)	5, 324, 365, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.