Rroxscaffold_2G00117310

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
44963064 .. 44972212
9149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117310.1

Sequence Viewer

Length: 288 bp
ATGGGGCTATGCAACCTAAGAGCACTAGGAGCAAAGACACATGAAAGGCCAAATCACGAAATCTGCTTGTGCAAGTCAGTCAACTTCGACAGAGCATTGAGAGCAATTCGGGATGAGATATCTTCGATTCTCGAAGGTAGTACTCGAGAGCGAAGAGAGAGAGTTCCTCAAGCTAGCAAAATTGAAGAAGAAGAAAACATAAGGTTGAGTGGGAACATGACAGTTTTGATTCAAGATATGGATGGGGTGCTTGGAGATGATACAAAGGAGAGCATGGAGGAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.76

Weight (kDa)

5.04

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 185, 233
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 236
BfaI CTAG 2 cut(s) 26, 174
BmcAI AGTACT 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 144
BmtI GCTAGC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpuEI CTTGAG 1 cut(s) 153
BseGI GGATG 2 cut(s) 118, 247
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 144
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 25
BspANI GGCC 1 cut(s) 49
BspOI GCTAGC 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 118, 247
BstMWI GCNNNNNNNGC 2 cut(s) 29, 101
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 118, 247
Cac8I GCNNGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 141
CviAII CATG 3 cut(s) 41, 217, 274
CviJI RGCY 3 cut(s) 7, 49, 173
CviKI_1 RGCY 3 cut(s) 7, 49, 173
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 144
EcoRV GATATC 1 cut(s) 120
FaeI CATG 3 cut(s) 44, 220, 277
FaiI YATR 6 cut(s) 10, 42, 200, 218, 239, 275
FatI CATG 3 cut(s) 40, 216, 273
FokI GGATG 2 cut(s) 125, 254
FspBI CTAG 2 cut(s) 26, 174
HaeIII GGCC 1 cut(s) 49
Hin1II CATG 3 cut(s) 44, 220, 277
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 2 cut(s) 127, 229
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 5 cut(s) 56, 110, 131, 146, 233
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 12, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 101
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 3 cut(s) 44, 220, 277
LmnI GCTCC 1 cut(s) 29
MaeI CTAG 2 cut(s) 26, 174
MboII GAAGA 5 cut(s) 114, 165, 197, 200, 203
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 105, 180
MnlI CCTC 2 cut(s) 177, 271
MwoI GCNNNNNNNGC 2 cut(s) 29, 101
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 3 cut(s) 44, 220, 277
PaeR7I CTCGAG 1 cut(s) 144
PfeI GAWTC 2 cut(s) 127, 229
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
ScaI AGTACT 1 cut(s) 142
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 18, 139, 175, 206, 287
Sfr274I CTCGAG 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 144, 168
SmoI CTYRAG 2 cut(s) 144, 168
Sse9I AATT 2 cut(s) 105, 180
SspMI CTAG 2 cut(s) 26, 174
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 4 cut(s) 87, 125, 132, 145
TasI AATT 2 cut(s) 105, 180
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 2 cut(s) 127, 229
TspDTI ATGAA 1 cut(s) 57
XhoI CTCGAG 1 cut(s) 144
XspI CTAG 2 cut(s) 26, 174
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.