RchiOBHm_Chr5g0030411

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
24088501 .. 24089014
514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30974

Sequence Viewer

Length: 261 bp
ATGTGGAAGCATCTAAGAAGTCTCAAGAAGATCATTACCGAATTGAACACAAATTGTGCTTTAAAAATCAAATCCATTACAGATTCGGAAAACTGCCAGTGCAGATCAGTCAATTTCAACGGAGTGTCAAAAATTGTTCAGAGCTCAGAAAATTATGATCTTTATATGGTTGGAAAGCTACGGATGTCTAGTTTCCAGAAATTTTTACAGCTCGTCGATATCTATTTTATAGAAGAACTTATGACCGTTTTAGTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.06

Weight (kDa)

8.86

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 200
AgsI TTSAA 2 cut(s) 46, 118
AluBI AGCT 3 cut(s) 144, 178, 211
AluI AGCT 3 cut(s) 144, 178, 211
Alw21I GWGCWC 2 cut(s) 146, 258
Alw26I GTCTC 1 cut(s) 26
Alw44I GTGCAC 1 cut(s) 254
ApaLI GTGCAC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 146, 258
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 189
BmsI GCATC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 146, 258
BsmAI GTCTC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 146, 258
Bsp143I GATC 3 cut(s) 30, 104, 157
BspCNI CTCAG 1 cut(s) 158
BsrI ACTGG 1 cut(s) 97
BssMI GATC 3 cut(s) 30, 104, 157
Bst4CI ACNGT 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 14, 145
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 3 cut(s) 33, 107, 160
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 3 cut(s) 30, 104, 157
BstSLI GKGCMC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 104, 256
CviJI RGCY 3 cut(s) 144, 178, 211
CviKI_1 RGCY 3 cut(s) 144, 178, 211
DdeI CTNAG 2 cut(s) 14, 145
DpnI GATC 3 cut(s) 32, 106, 159
DpnII GATC 3 cut(s) 30, 104, 157
DraI TTTAAA 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoRV GATATC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 146
FaiI YATR 5 cut(s) 156, 165, 167, 230, 242
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 146
FspBI CTAG 1 cut(s) 189
FspEI CC 9 cut(s) 52, 71, 88, 105, 110, 152, 156, 166, 209
HinfI GANTC 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 88, 141, 148
Hpy188III TCNNGA 2 cut(s) 25, 196
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 102, 256
HpyF3I CTNAG 2 cut(s) 14, 145
Kzo9I GATC 3 cut(s) 30, 104, 157
LpnPI CCDG 2 cut(s) 110, 209
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 189
MalI GATC 3 cut(s) 32, 106, 159
MboI GATC 3 cut(s) 30, 104, 157
MboII GAAGA 2 cut(s) 40, 245
MhlI GDGCHC 2 cut(s) 146, 258
MluCI AATT 6 cut(s) 41, 52, 112, 132, 151, 200
MmeI TCCRAC 1 cut(s) 151
MseI TTAA 1 cut(s) 62
NdeII GATC 3 cut(s) 30, 104, 157
PfeI GAWTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 3 cut(s) 30, 104, 157
SduI GDGCHC 2 cut(s) 146, 258
SetI ASST 3 cut(s) 146, 180, 213
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 5 cut(s) 37, 109, 201, 208, 224
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 6 cut(s) 41, 52, 112, 132, 151, 200
SspMI CTAG 1 cut(s) 189
SstI GAGCTC 1 cut(s) 146
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 216
TasI AATT 6 cut(s) 41, 52, 112, 132, 151, 200
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 135, 196
TspRI CASTG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 254
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.