RchiOBHm_Chr1g0327601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002857
Physical Location & Seq
Reverse (-)
16551505 .. 16552859
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55710

Sequence Viewer

Length: 261 bp
ATGTGGAAGCATCTAAGAAGTCTCATGAAGATCATTACCGAATTGAACACAAATTGTGCTTTAAAAATCAAATCCATTACAGATTCGGAAAACTGCCACTGCAGATCAGTCAACTTCAACGGAGTGTCAAAAATCGTTCAGAGCTCAGAAAATTATGATCTTTATATGGATGGAAATCTACGGATGTCTAGTTTCCAGAACTTTTTACAGCTCATCGATATCTATTTTCTAGAAGAAGTTATGACCGTTTTAGTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.06

Weight (kDa)

6.25

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 46, 118
AluBI AGCT 2 cut(s) 144, 211
AluI AGCT 2 cut(s) 144, 211
Alw21I GWGCWC 2 cut(s) 146, 258
Alw26I GTCTC 1 cut(s) 26
Alw44I GTGCAC 1 cut(s) 254
ApaLI GTGCAC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 146, 258
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 2 cut(s) 189, 230
BfmI CTRYAG 1 cut(s) 100
BmsI GCATC 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 216
BseGI GGATG 2 cut(s) 175, 189
BseJI GATNNNNATC 1 cut(s) 174
BseMII CTCAG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 146, 258
BsmAI GTCTC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 146, 258
Bsp143I GATC 3 cut(s) 30, 104, 157
BspCNI CTCAG 1 cut(s) 158
BspDI ATCGAT 1 cut(s) 216
BspHI TCATGA 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 104
BssMI GATC 3 cut(s) 30, 104, 157
Bst4CI ACNGT 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 14, 145
BstF5I GGATG 2 cut(s) 175, 189
BstKTI GATC 3 cut(s) 33, 107, 160
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 3 cut(s) 30, 104, 157
BstSFI CTRYAG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 2 cut(s) 175, 189
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 97, 256
CciI TCATGA 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 216
CviAII CATG 1 cut(s) 25
CviJI RGCY 2 cut(s) 144, 211
CviKI_1 RGCY 2 cut(s) 144, 211
DdeI CTNAG 2 cut(s) 14, 145
DpnI GATC 3 cut(s) 32, 106, 159
DpnII GATC 3 cut(s) 30, 104, 157
DraI TTTAAA 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoRV GATATC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 156, 165, 167, 242
FatI CATG 1 cut(s) 24
FokI GGATG 2 cut(s) 182, 196
FriOI GRGCYC 1 cut(s) 146
FspBI CTAG 2 cut(s) 189, 230
FspEI CC 9 cut(s) 52, 71, 88, 105, 110, 152, 156, 166, 209
Hin1II CATG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 83
Hpy166II GTNNAC 2 cut(s) 112, 256
Hpy188I TCNGA 3 cut(s) 88, 141, 148
Hpy188III TCNNGA 3 cut(s) 25, 196, 230
Hpy8I GTNNAC 2 cut(s) 112, 256
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 102, 256
HpyF3I CTNAG 2 cut(s) 14, 145
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 3 cut(s) 30, 104, 157
LpnPI CCDG 1 cut(s) 209
LweI GCATC 1 cut(s) 19
MaeI CTAG 2 cut(s) 189, 230
MalI GATC 3 cut(s) 32, 106, 159
MboI GATC 3 cut(s) 30, 104, 157
MboII GAAGA 2 cut(s) 40, 245
MhlI GDGCHC 2 cut(s) 146, 258
MluCI AATT 3 cut(s) 41, 52, 151
MseI TTAA 1 cut(s) 62
NdeII GATC 3 cut(s) 30, 104, 157
NlaIII CATG 1 cut(s) 28
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 104
SacI GAGCTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 3 cut(s) 30, 104, 157
SduI GDGCHC 2 cut(s) 146, 258
SetI ASST 2 cut(s) 146, 213
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 100
SgeI CNNG 4 cut(s) 37, 201, 208, 242
Sse9I AATT 3 cut(s) 41, 52, 151
SspMI CTAG 2 cut(s) 189, 230
SstI GAGCTC 1 cut(s) 146
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 216
TasI AATT 3 cut(s) 41, 52, 151
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 41
TspGWI ACGGA 2 cut(s) 135, 196
TspRI CASTG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 2 cut(s) 189, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.