Rroxscaffold_7G00176840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002857
Physical Location & Seq
Reverse (-)
16456035 .. 16458106
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176840.1

Sequence Viewer

Length: 489 bp
ATGGTCAAGGGTTGGTTACTAATGATCGGGTATTTGTTAGGTGTTTACACGACCGTTGATGGTAGATTGCAGCAATTGGAATTAGCTCTCGCTTGGAAAAGAAGAATTGGTAAGGGTCCGGATATTGTCATATTCGTCCCGCATTTGTCCGAGTATCTTGGAGCAAAAAAGGAGAAAAGAAGTAAAAAATGGACTGAAAGGCAAAATCGGCAAATCTGCCTGTGCAGATCAGTCAACTTCAACAGATCACTGAGACGAGCTCAAAATGATCCAGAGGATGATCTTTATATTGATGGAAAGCCTAGGACGTCTAGTTTCCAGATCTTTTTATGGCTCATCAATATCATTTTTCTAGAAGAAGTTATGGCAGATTTAGTACAAGAAGGTCAGGCTGCACGTGAATCTGAGGTTGGACGGGAATTTATGTTTCGTAGCCCAAATCACACCGAGAAGCCTGAGGATGAGTTTGTGCTTCATATTTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.93

Weight (kDa)

8.56

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 419
AcvI CACGTG 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 1 cut(s) 378
AgsI TTSAA 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 86, 260
AluI AGCT 2 cut(s) 86, 260
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 1 cut(s) 263
Aor13HI TCCGGA 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 70, 392
ApoI RAATTY 1 cut(s) 419
AspA2I CCTAGG 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
AvrII CCTAGG 1 cut(s) 302
AxyI CCTNAGG 1 cut(s) 456
BanII GRGCYC 1 cut(s) 262
BbrPI CACGTG 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 82, 379
BccI CCATC 2 cut(s) 53, 287
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 3 cut(s) 303, 312, 353
BglII AGATCT 1 cut(s) 321
BisI GCNGC 2 cut(s) 71, 393
BlnI CCTAGG 1 cut(s) 302
BlsI GCNGC 2 cut(s) 72, 394
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BsaAI YACGTR 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 118
Bse21I CCTNAGG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 2 cut(s) 283, 466
BseMII CTCAG 3 cut(s) 242, 396, 447
BseXI GCAGC 2 cut(s) 82, 379
BsgI GTGCAG 2 cut(s) 244, 378
Bsh1285I CGRYCG 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 262
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 6 cut(s) 24, 227, 245, 268, 280, 321
BspACI CCGC 1 cut(s) 140
BspCNI CTCAG 3 cut(s) 243, 397, 448
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 6 cut(s) 24, 227, 245, 268, 280, 321
BssNI GRCGYC 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 398
BstDEI CTNAG 3 cut(s) 251, 405, 456
BstF5I GGATG 2 cut(s) 283, 466
BstKTI GATC 6 cut(s) 27, 230, 248, 271, 283, 324
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 6 cut(s) 24, 227, 245, 268, 280, 321
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 82, 379
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
Bsu36I CCTNAGG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 283, 466
BtsIMutI CAGTG 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 377
CviJI RGCY 7 cut(s) 86, 260, 301, 334, 392, 435, 454
CviKI_1 RGCY 7 cut(s) 86, 260, 301, 334, 392, 435, 454
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 3 cut(s) 251, 405, 456
DpnI GATC 6 cut(s) 26, 229, 247, 270, 282, 323
DpnII GATC 6 cut(s) 24, 227, 245, 268, 280, 321
Ecl136II GAGCTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 260
Eco72I CACGTG 1 cut(s) 398
Eco81I CCTNAGG 1 cut(s) 456
EcoICRI GAGCTC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 247
FaiI YATR 6 cut(s) 131, 288, 331, 365, 425, 477
FaqI GGGAC 1 cut(s) 122
FauI CCCGC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 71, 393
FokI GGATG 2 cut(s) 290, 473
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 71, 393
FspBI CTAG 3 cut(s) 303, 312, 353
GluI GCNGC 2 cut(s) 71, 393
HapII CCGG 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 401
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 46, 235
Hpy188I TCNGA 2 cut(s) 151, 406
Hpy188III TCNNGA 4 cut(s) 119, 272, 319, 353
Hpy8I GTNNAC 2 cut(s) 46, 235
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 308, 397
HpyCH4V TGCA 3 cut(s) 70, 225, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 3 cut(s) 251, 405, 456
HpySE526I ACGT 2 cut(s) 308, 397
Hsp92I GRCGYC 1 cut(s) 308
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 6 cut(s) 24, 227, 245, 268, 280, 321
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 6 cut(s) 132, 233, 285, 332, 374, 468
Lsp1109I GCAGC 2 cut(s) 82, 379
MaeI CTAG 3 cut(s) 303, 312, 353
MaeII ACGT 2 cut(s) 308, 397
MaeIII GTNAC 1 cut(s) 15
MalI GATC 6 cut(s) 26, 229, 247, 270, 282, 323
MboI GATC 6 cut(s) 24, 227, 245, 268, 280, 321
MboII GAAGA 2 cut(s) 114, 368
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 4 cut(s) 74, 80, 105, 419
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 3 cut(s) 268, 400, 451
MroI TCCGGA 1 cut(s) 118
MseI TTAA 1 cut(s) 487
MspI CCGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 6 cut(s) 24, 227, 245, 268, 280, 321
NlaIV GGNNCC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 2 cut(s) 72, 394
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
Ppu21I YACGTR 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 262
PspCI CACGTG 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 321
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SacI GAGCTC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 2 cut(s) 71, 393
Sau3AI GATC 6 cut(s) 24, 227, 245, 268, 280, 321
Sau96I GGNCC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 262
SetI ASST 7 cut(s) 43, 88, 262, 311, 388, 400, 411
SinI GGWCC 1 cut(s) 116
Sse9I AATT 4 cut(s) 74, 80, 105, 419
SsiI CCGC 1 cut(s) 140
SspMI CTAG 3 cut(s) 303, 312, 353
SstI GAGCTC 1 cut(s) 262
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 2 cut(s) 311, 400
TasI AATT 4 cut(s) 74, 80, 105, 419
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 70, 392
TspDTI ATGAA 1 cut(s) 464
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 419
XbaI TCTAGA 1 cut(s) 352
XmaJI CCTAGG 1 cut(s) 302
XspI CTAG 3 cut(s) 303, 312, 353
ZraI GACGTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.