Rroxscaffold_6G00389220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002857
Physical Location & Seq
Forward (+)
2585418 .. 2599326
13909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389220.1

Sequence Viewer

Length: 1170 bp
ATGCTTGACAAGTCCGTTAAGGTGCGCAAGAAGACCGTCGACCCTAAGACAAGGGAGGTAACCACGGGGACAAAGGCGAAGATTCTAGAAGCTCCTCTTCATTCTAACCATGCAAAGTTGAAGAAGAAGAGAATGGGTGGCAAAGAGAAAGATGTGGCGAATGAGGCCGAGCAAGAAAAAAATGATGAACCGGGTTGGGTTATGGAAGTTCCCGTAAGCAAGCCTCGTGAGAAGACTACAACTACCATTGGAGAACAGGATGTGGCGGACAAAGGTAGTAACAAGGAGGCAAAGAAGGATGTTGAGAAAGAGAAGAAAAAGAAAGTTACGGCGAAGAAGGAGGGGACCAAACATGACGAGAAAGACGCCGGTGAGAGCGTTGTCAAGGGTTTGGATGGCGGTAGCACCGTTGATCGCCTAAGGGGCGCTTGTCTATTCTACGAAGAGGAAAATTGGCTCCTCGGCCGTTCCCTTGACCATGCGAAAAGGTCAAGGTTACCGAAAAGAATGTGGTGGTTGGCGGGTAGTCAAGGTTTTGGGGGAGGCGGGTTTGTTTCCGACAATCCTGTTCTTGGGTTGGTGCAAGCGAAGAAAGCTAATAGGGAGGATACCATCTCCAACCGGAAGAAGCACTTACCGCCAAGGAAAAGGAGTTGGCGGACTTCTAGTCCGCTAGACGGGAAGAGGGTTGCGAAGAAGGTGAAAGATGAGAAAACAAGGGTTGGCCTTGAAGTAGTGGAGGCCTTTAAAAAGTCTGCGGAGTTCACCGAGCTTCGACAAATACCGGTAGGCAAGGTGCCGCGACCAACTTTACGGAGCTTAAGGAGAAAGTATTTTAGAGCAAAGAAGAAGAAAAGAAGCAAAAGAGGGATTGAAAGACAAAATCAGCAAATCTGCTCGTACAGATCAGTCAACTTCGACAGAGTACTGAGAGCAGCTCAGGACTGTCCAGATAATGATCTTTATAGTGATGGAAAGCCTCGGATGTCTAGTTTCCAAAGCTTTTTACGATTCCTGAATATCATTTTTCTAGAAGAAGTTATGACCGATTTAGTACAACGAGGTCAGGCTGCACGCGAATCCGAGTCCAAAGCGGGCGGGGAAAGATTGTCTCCTAAAGCTATACGGGAAGAAGAATTAAAAGTGTATCGGCCTTATTCGAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

389

Amino Acids

44.2

Weight (kDa)

10.01

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 796
AccI GTMKAC 1 cut(s) 39
AccII CGCG 2 cut(s) 802, 1077
AcoI YGGCCR 1 cut(s) 463
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 3 cut(s) 902, 927, 1056
AfiI CCNNNNNNNGG 2 cut(s) 572, 677
AflII CTTAAG 1 cut(s) 820
AgeI ACCGGT 1 cut(s) 784
AgsI TTSAA 3 cut(s) 121, 731, 875
AhdI GACNNNNNGTC 1 cut(s) 666
AluBI AGCT 7 cut(s) 92, 596, 772, 819, 938, 1002, 1121
AluI AGCT 7 cut(s) 92, 596, 772, 819, 938, 1002, 1121
Alw26I GTCTC 1 cut(s) 1116
AoxI GGCC 5 cut(s) 165, 463, 724, 741, 1151
ApeKI GCWGC 2 cut(s) 935, 1070
AsiGI ACCGGT 1 cut(s) 784
AspLEI GCGC 2 cut(s) 27, 428
AspS9I GGNCC 1 cut(s) 345
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 383, 712, 757
AvaII GGWCC 1 cut(s) 345
AxyI CCTNAGG 1 cut(s) 419
BanI GGYRCC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 1166
BauI CACGAG 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 38, 239
BbvI GCAGC 2 cut(s) 947, 1057
BccI CCATC 3 cut(s) 389, 620, 965
BceAI ACGGC 2 cut(s) 345, 450
BciVI GTATCC 1 cut(s) 601
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 1116
BfaI CTAG 5 cut(s) 86, 666, 674, 990, 1031
BfoI RGCGCY 1 cut(s) 429
BfrI CTTAAG 1 cut(s) 820
BfuI GTATCC 1 cut(s) 601
BglI GCCNNNNNGGC 1 cut(s) 423
BisI GCNGC 3 cut(s) 800, 936, 1071
BlsI GCNGC 3 cut(s) 801, 937, 1072
BmcAI AGTACT 1 cut(s) 927
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 345
BmeRI GACNNNNNGTC 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 3 cut(s) 346, 458, 798
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 38, 239
BplI GAGNNNNNCTC 2 cut(s) 922, 954
Bpu10I CCTNAGC 1 cut(s) 939
BpuMI CCSGG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 63, 460, 641, 980
BsaWI WCCGGW 2 cut(s) 621, 784
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 677
Bse118I RCCGGY 2 cut(s) 368, 784
Bse21I CCTNAGG 1 cut(s) 419
Bse8I GATNNNNATC 1 cut(s) 957
BseDI CCNNGG 4 cut(s) 63, 460, 641, 980
BseGI GGATG 4 cut(s) 265, 304, 400, 990
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 2 cut(s) 572, 677
BseMII CTCAG 2 cut(s) 920, 953
BseRI GAGGAG 2 cut(s) 84, 449
BseX3I CGGCCG 1 cut(s) 463
BseXI GCAGC 2 cut(s) 947, 1057
BsgI GTGCAG 1 cut(s) 1056
Bsh1236I CGCG 2 cut(s) 802, 1077
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 5 cut(s) 167, 465, 726, 743, 1153
BshNI GGYRCC 1 cut(s) 796
BshTI ACCGGT 1 cut(s) 784
BsiEI CGRYCG 1 cut(s) 466
BsiSI CCGG 4 cut(s) 191, 369, 622, 785
BslFI GGGAC 2 cut(s) 82, 358
BslI CCNNNNNNNGG 2 cut(s) 572, 677
BsmAI GTCTC 1 cut(s) 1116
BsmFI GGGAC 2 cut(s) 82, 358
BsnI GGCC 5 cut(s) 167, 465, 726, 743, 1153
Bsp1286I GDGCHC 1 cut(s) 1166
Bsp143I GATC 3 cut(s) 412, 905, 958
BspANI GGCC 5 cut(s) 167, 465, 726, 743, 1153
BspCNI CTCAG 2 cut(s) 921, 952
BspFNI CGCG 2 cut(s) 802, 1077
BspLI GGNNCC 3 cut(s) 346, 458, 798
BspT107I GGYRCC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 820
BsrFI RCCGGY 2 cut(s) 368, 784
BssAI RCCGGY 2 cut(s) 368, 784
BssECI CCNNGG 4 cut(s) 63, 460, 641, 980
BssMI GATC 3 cut(s) 412, 905, 958
BssNI GRCGYC 1 cut(s) 366
BssSI CACGAG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 641
Bst2BI CACGAG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 37, 409, 947
Bst6I CTCTTC 4 cut(s) 102, 122, 438, 677
BstACI GRCGYC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 820
BstC8I GCNNGC 4 cut(s) 221, 585, 1075, 1096
BstDEI CTNAG 4 cut(s) 45, 419, 929, 939
BstDSI CCRYGG 1 cut(s) 63
BstEII GGTNACC 2 cut(s) 58, 495
BstF5I GGATG 4 cut(s) 265, 304, 400, 990
BstFNI CGCG 2 cut(s) 802, 1077
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 2 cut(s) 27, 428
BstKTI GATC 3 cut(s) 415, 908, 961
BstMAI GTCTC 1 cut(s) 1116
BstMBI GATC 3 cut(s) 412, 905, 958
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 4 cut(s) 164, 423, 593, 637
BstPI GGTNACC 2 cut(s) 58, 495
BstSCI CCNGG 1 cut(s) 190
BstUI CGCG 2 cut(s) 802, 1077
BstV1I GCAGC 2 cut(s) 947, 1057
BstV2I GAAGAC 2 cut(s) 38, 239
BstZI CGGCCG 1 cut(s) 463
Bsu36I CCTNAGG 1 cut(s) 419
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 5 cut(s) 167, 465, 726, 743, 1153
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 4 cut(s) 265, 304, 400, 990
Cac8I GCNNGC 4 cut(s) 221, 585, 1075, 1096
CfoI GCGC 2 cut(s) 27, 428
Cfr10I RCCGGY 2 cut(s) 368, 784
Cfr13I GGNCC 1 cut(s) 345
CseI GACGC 1 cut(s) 374
Csp6I GTAC 3 cut(s) 901, 926, 1055
CspAI ACCGGT 1 cut(s) 784
CviAII CATG 3 cut(s) 110, 353, 479
CviQI GTAC 3 cut(s) 901, 926, 1055
DdeI CTNAG 4 cut(s) 45, 419, 929, 939
DpnI GATC 3 cut(s) 414, 907, 960
DpnII GATC 3 cut(s) 412, 905, 958
DraI TTTAAA 1 cut(s) 748
DriI GACNNNNNGTC 1 cut(s) 666
EaeI YGGCCR 1 cut(s) 463
EagI CGGCCG 1 cut(s) 463
Eam1104I CTCTTC 4 cut(s) 102, 122, 438, 677
Eam1105I GACNNNNNGTC 1 cut(s) 666
EarI CTCTTC 4 cut(s) 102, 122, 438, 677
EciI GGCGGA 2 cut(s) 281, 673
EclXI CGGCCG 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 641
Eco147I AGGCCT 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 1166
Eco47I GGWCC 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 463
Eco81I CCTNAGG 1 cut(s) 419
Eco91I GGTNACC 2 cut(s) 58, 495
EcoO65I GGTNACC 2 cut(s) 58, 495
EcoT14I CCWWGG 1 cut(s) 641
EcoT38I GRGCYC 1 cut(s) 1166
ErhI CCWWGG 1 cut(s) 641
FaeI CATG 3 cut(s) 113, 356, 482
FaiI YATR 7 cut(s) 111, 203, 354, 480, 966, 1043, 1124
FalI AAGNNNNNCTT 6 cut(s) 81, 113, 412, 444, 617, 649
FaqI GGGAC 2 cut(s) 82, 358
FatI CATG 3 cut(s) 109, 352, 478
FauI CCCGC 4 cut(s) 514, 539, 1087, 1091
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 800, 936, 1071
FokI GGATG 4 cut(s) 272, 311, 407, 997
FriOI GRGCYC 1 cut(s) 1166
Fsp4HI GCNGC 3 cut(s) 800, 936, 1071
FspBI CTAG 5 cut(s) 86, 666, 674, 990, 1031
FspI TGCGCA 1 cut(s) 26
GlaI GCGC 2 cut(s) 26, 427
GluI GCNGC 3 cut(s) 800, 936, 1071
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 5 cut(s) 167, 465, 726, 743, 1153
HapII CCGG 4 cut(s) 191, 369, 622, 785
HgaI GACGC 1 cut(s) 374
HhaI GCGC 2 cut(s) 27, 428
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 3 cut(s) 113, 356, 482
Hin6I GCGC 2 cut(s) 25, 426
HinP1I GCGC 2 cut(s) 25, 426
HincII GTYRAC 2 cut(s) 40, 913
HindII GTYRAC 2 cut(s) 40, 913
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 4 cut(s) 82, 1011, 1079, 1085
HpaII CCGG 4 cut(s) 191, 369, 622, 785
HphI GGTGA 3 cut(s) 383, 712, 757
Hpy166II GTNNAC 3 cut(s) 40, 765, 913
Hpy188I TCNGA 3 cut(s) 559, 984, 1084
Hpy188III TCNNGA 6 cut(s) 86, 227, 941, 950, 1015, 1031
Hpy8I GTNNAC 3 cut(s) 40, 765, 913
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 289, 331, 691
HpyCH4III ACNGT 3 cut(s) 37, 409, 947
HpyCH4V TGCA 3 cut(s) 113, 583, 1073
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 423, 593, 637
HpyF3I CTNAG 4 cut(s) 45, 419, 929, 939
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 3 cut(s) 113, 356, 482
HspAI GCGC 2 cut(s) 25, 426
Kzo9I GATC 3 cut(s) 412, 905, 958
LmnI GCTCC 3 cut(s) 97, 462, 816
Lsp1109I GCAGC 2 cut(s) 947, 1057
MaeI CTAG 5 cut(s) 86, 666, 674, 990, 1031
MaeIII GTNAC 4 cut(s) 58, 278, 325, 495
MalI GATC 3 cut(s) 414, 907, 960
MboI GATC 3 cut(s) 412, 905, 958
MhlI GDGCHC 1 cut(s) 1166
MluCI AATT 2 cut(s) 451, 1136
MlyI GAGTC 1 cut(s) 1094
MmeI TCCRAC 2 cut(s) 582, 642
MseI TTAA 4 cut(s) 18, 747, 821, 1139
MspCI CTTAAG 1 cut(s) 820
MspI CCGG 4 cut(s) 191, 369, 622, 785
MspR9I CCNGG 1 cut(s) 192
MvnI CGCG 2 cut(s) 802, 1077
MwoI GCNNNNNNNGC 4 cut(s) 164, 423, 593, 637
NciI CCSGG 1 cut(s) 192
NdeII GATC 3 cut(s) 412, 905, 958
NlaIII CATG 3 cut(s) 113, 356, 482
NlaIV GGNNCC 3 cut(s) 346, 458, 798
NmeAIII GCCGAG 2 cut(s) 193, 441
NsbI TGCGCA 1 cut(s) 26
PceI AGGCCT 1 cut(s) 743
PfeI GAWTC 3 cut(s) 82, 1011, 1079
PinAI ACCGGT 1 cut(s) 784
PkrI GCNGC 3 cut(s) 801, 937, 1072
PleI GAGTC 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1093
PspEI GGTNACC 2 cut(s) 58, 495
PspN4I GGNNCC 3 cut(s) 346, 458, 798
PspPI GGNCC 1 cut(s) 345
RsaI GTAC 3 cut(s) 902, 927, 1056
RsaNI GTAC 3 cut(s) 901, 926, 1055
SalI GTCGAC 1 cut(s) 38
SaqAI TTAA 4 cut(s) 18, 747, 821, 1139
SatI GCNGC 3 cut(s) 800, 936, 1071
Sau3AI GATC 3 cut(s) 412, 905, 958
Sau96I GGNCC 1 cut(s) 345
ScaI AGTACT 1 cut(s) 927
SchI GAGTC 1 cut(s) 1094
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 1166
SgrAI CRCCGGYG 1 cut(s) 368
SinI GGWCC 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
Sse9I AATT 2 cut(s) 451, 1136
SseBI AGGCCT 1 cut(s) 743
SspMI CTAG 5 cut(s) 86, 666, 674, 990, 1031
StuI AGGCCT 1 cut(s) 743
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 641
TaaI ACNGT 3 cut(s) 37, 409, 947
TaqI TCGA 4 cut(s) 39, 775, 918, 1160
TaqII GACCGA 1 cut(s) 1061
TasI AATT 2 cut(s) 451, 1136
TatI WGTACW 2 cut(s) 925, 1054
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 3 cut(s) 82, 1011, 1079
Tru1I TTAA 4 cut(s) 18, 747, 821, 1139
Tru9I TTAA 4 cut(s) 18, 747, 821, 1139
TseI GCWGC 2 cut(s) 935, 1070
TspDTI ATGAA 2 cut(s) 89, 201
TspGWI ACGGA 2 cut(s) 4, 829
Vha464I CTTAAG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 345
XbaI TCTAGA 2 cut(s) 85, 1030
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 5 cut(s) 86, 666, 674, 990, 1031
ZrmI AGTACT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.