RchiOBHm_Chr4g0435071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002857
Physical Location & Seq
Reverse (-)
58682222 .. 58684973
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40351

Sequence Viewer

Length: 318 bp
ATGGAGAAGGAGTTGTCGAAGGTGTCGAAAGCGGCGGACGCTATGAAATTGTGTGACCAAGGCGCCGAGTATGATATCGCTTCTGCTGCTGGCTTGGATTCTAGGGGCTGCTTCGAAGTTGGATTTCATATCAGTTACTGGGTTTGGTTAGGGTACTCCTGTGACTATCTTGTGGATTTTTTTGTTACAGAAGTCAGTAAGCTGGCACGAGTTCAATGTATGGACAGCTCAAGAATTCTTGAAACTCTTAAGTGCGTCATTATATATAAGTTCAGGGGAAAAAACACTTACACTCAAGAAGAGATTGATGTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.93

Weight (kDa)

4.91

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 2 cut(s) 32, 35
AcsI RAATTY 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 155
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 2 cut(s) 215, 242
AluBI AGCT 2 cut(s) 202, 228
AluI AGCT 2 cut(s) 202, 228
AlwNI CAGNNNCTG 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 86, 108
ApoI RAATTY 1 cut(s) 234
AspLEI GCGC 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 114
BaeI ACNNNNGTAYC 2 cut(s) 145, 178
BanI GGYRCC 1 cut(s) 62
BauI CACGAG 1 cut(s) 207
BbvI GCAGC 2 cut(s) 73, 95
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 3 cut(s) 33, 87, 109
BlsI GCNGC 3 cut(s) 34, 88, 110
BmiI GGNNCC 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 214, 279
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 73, 95
BshNI GGYRCC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 114
BspACI CCGC 2 cut(s) 32, 35
BspLI GGNNCC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 91, 204
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 38, 86
BstV1I GCAGC 2 cut(s) 73, 95
Cac8I GCNNGC 2 cut(s) 91, 204
CaiI CAGNNNCTG 1 cut(s) 138
CfoI GCGC 1 cut(s) 65
CseI GACGC 2 cut(s) 47, 244
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 4 cut(s) 93, 108, 202, 228
CviKI_1 RGCY 4 cut(s) 93, 108, 202, 228
CviQI GTAC 1 cut(s) 154
DinI GGCGCC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 58
Eco32I GATATC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 234
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 7 cut(s) 44, 72, 129, 221, 263, 265, 267
Fnu4HI GCNGC 3 cut(s) 33, 87, 109
Fsp4HI GCNGC 3 cut(s) 33, 87, 109
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 33, 87, 109
HaeII RGCGCY 1 cut(s) 66
HgaI GACGC 2 cut(s) 47, 244
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 98
Hpy188III TCNNGA 3 cut(s) 231, 239, 296
HpyAV CCTTC 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 86
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 75, 124, 172, 188, 259
Lsp1109I GCAGC 2 cut(s) 73, 95
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 4 cut(s) 53, 134, 161, 184
MboII GAAGA 1 cut(s) 311
MluCI AATT 2 cut(s) 47, 234
Mly113I GGCGCC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 100
MseI TTAA 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 38, 86
NarI GGCGCC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 64
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 53, 161
NspV TTCGAA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 34, 88, 110
PluTI GGCGCC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 138
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 3 cut(s) 33, 87, 109
SetI ASST 3 cut(s) 24, 204, 230
SfoI GGCGCC 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 114
SmlI CTYRAG 3 cut(s) 229, 248, 294
SmoI CTYRAG 3 cut(s) 229, 248, 294
Sse9I AATT 2 cut(s) 47, 234
SsiI CCGC 2 cut(s) 32, 35
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 58
TaqI TCGA 3 cut(s) 17, 26, 114
TasI AATT 2 cut(s) 47, 234
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseFI GTSAC 2 cut(s) 53, 161
TseI GCWGC 2 cut(s) 86, 108
Tsp45I GTSAC 2 cut(s) 53, 161
TspDTI ATGAA 2 cut(s) 59, 116
Vha464I CTTAAG 1 cut(s) 248
XapI RAATTY 1 cut(s) 234
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.