Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002857

Physical Location & Seq

Genomic Coordinates Forward (+)

6410681 .. 6413041

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCGATTTAGTACAAGAAGGTCAGGCTGCACGTGAATCTGAGCTTGGACAGAAATTTATGTTTCGAAGCCCAAATCACACCGAGAAGCCTGAGGACAAGTTTAGGCCAAGTGTACCATTTGTTGAGCAACTGAAGGCTCTTCAAGAAGTTGTGGATGAAGGAAAGGTCATAACTATGAGCTATCCAAACCAACTTAAAAGTTTTGACTTTCCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

73

Amino Acids

8.34

Weight (kDa)

5.02

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02941
rosa_chinensis	RchiOBHm_Chr1g0327601 RchiOBHm_Chr1g0328211 RchiOBHm_Chr1g0328421 RchiOBHm_Chr1g0369921 RchiOBHm_Chr1g0371671 RchiOBHm_Chr1g0382031 RchiOBHm_Chr2g0130721 RchiOBHm_Chr2g0141321 RchiOBHm_Chr4g0401261 RchiOBHm_Chr4g0435071 RchiOBHm_Chr5g0030411 RchiOBHm_Chr5g0036821 RchiOBHm_Chr5g0070441 RchiOBHm_Chr6g0268181 RchiOBHm_Chr7g0222111
rosa_multiflora	Rmu_sc0003249.1_g000016 Rmu_sc0009671.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095380 Rroxscaffold_2G00095630 Rroxscaffold_2G00110260 Rroxscaffold_2G00116450 Rroxscaffold_2G00117310 Rroxscaffold_3G00224120 Rroxscaffold_3G00275380 Rroxscaffold_4G00308610 Rroxscaffold_5G00338190 Rroxscaffold_5G00358130 Rroxscaffold_6G00389220 Rroxscaffold_7G00176840 Rroxscaffold_7G00198260
rosa_rugosa	Rorug03G0282500 Rorug05G0003200 Rorug06G0002200 Rorug07G0046500 Rorug07G0046600
rosa_samantha	Rh4AG337700 Rh4CG049400 Rh4DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	15, 117
AgsI	TTSAA	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	2 cut(s)	46, 183
AluI	AGCT	2 cut(s)	46, 183
AoxI	GGCC	2 cut(s)	3, 107
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	56
AsuII	TTCGAA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	33, 84
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	5, 109
BsiSI	CCGG	1 cut(s)	215
BsnI	GGCC	2 cut(s)	5, 109
Bsp119I	TTCGAA	1 cut(s)	67
BspANI	GGCC	2 cut(s)	5, 109
BspCNI	CTCAG	2 cut(s)	34, 85
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	42, 93
BstF5I	GGATG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	5, 109
BtsCI	GGATG	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	14, 116
CviJI	RGCY	8 cut(s)	5, 29, 46, 72, 91, 109, 140, 183
CviKI_1	RGCY	8 cut(s)	5, 29, 46, 72, 91, 109, 140, 183
CviQI	GTAC	2 cut(s)	14, 116
DdeI	CTNAG	2 cut(s)	42, 93
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	93
FaiI	YATR	4 cut(s)	62, 173, 179, 220
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	5, 109
HapII	CCGG	1 cut(s)	215
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	14, 130, 155
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	42, 93
HpySE526I	ACGT	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	147
LpnPI	CCDG	2 cut(s)	11, 105
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	34
MboII	GAAGA	1 cut(s)	134
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	31
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	35
PspCI	CACGTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	15, 117
RsaNI	GTAC	2 cut(s)	14, 116
RseI	CAYNNNNRTG	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	30
SetI	ASST	5 cut(s)	25, 37, 48, 171, 185
SfuI	TTCGAA	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	174
XapI	RAATTY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.