RchiOBHm_Chr1g0371671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002857
Physical Location & Seq
Reverse (-)
60766693 .. 60770234
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59574

Sequence Viewer

Length: 336 bp
ATGGGGGAATTTGATAGGAGCATAAAATGTGACGTAAAATGGAGATCTACTCATACTAGGAGACCTGTGGAAGACATGTGGAAGCATCTAAGAAGTCTGAAGAAGATCATTACCAAATTGAACACAAATTGTGCTTTAAAAATCAAATCCATTACAGATTCGGAAAACTGCCACTGCAGATCAGTCAACTTCAACGGAGTGTCAAAAATCGTTCAGAGCTCAGAAAATTATGATCTTTATATGGTTGGAAAGCTACGGATGTCTAGTTTCCAGAACTTTTTACAGCTCATCGATATCTATTTTCTAGAAGAAGTTATGACCGTTTTAGTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

13.09

Weight (kDa)

9.16

Isoelectric Point (pI)

55.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 2 cut(s) 121, 193
AluBI AGCT 3 cut(s) 219, 253, 286
AluI AGCT 3 cut(s) 219, 253, 286
Alw21I GWGCWC 2 cut(s) 221, 333
Alw26I GTCTC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 221, 333
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 3 cut(s) 57, 264, 305
BfmI CTRYAG 1 cut(s) 175
BglII AGATCT 1 cut(s) 44
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 34, 66
Bsa29I ATCGAT 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 55
BseCI ATCGAT 1 cut(s) 291
BseGI GGATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 333
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 221, 333
BsmAI GTCTC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 221, 333
Bsp143I GATC 4 cut(s) 44, 105, 179, 232
BspCNI CTCAG 1 cut(s) 233
BspDI ATCGAT 1 cut(s) 291
BspMAI CTGCAG 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 55
BssMI GATC 4 cut(s) 44, 105, 179, 232
Bst4CI ACNGT 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 89, 220
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 4 cut(s) 47, 108, 182, 235
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 4 cut(s) 44, 105, 179, 232
BstNSI RCATGY 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 291
BsuTUI ATCGAT 1 cut(s) 291
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 172, 331
ClaI ATCGAT 1 cut(s) 291
CviAII CATG 1 cut(s) 76
CviJI RGCY 3 cut(s) 219, 253, 286
CviKI_1 RGCY 3 cut(s) 219, 253, 286
DdeI CTNAG 2 cut(s) 89, 220
DpnI GATC 4 cut(s) 46, 107, 181, 234
DpnII GATC 4 cut(s) 44, 105, 179, 232
DraI TTTAAA 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 219
EcoRV GATATC 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 1 cut(s) 79
FaiI YATR 7 cut(s) 23, 54, 77, 231, 240, 242, 317
FatI CATG 1 cut(s) 75
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 221
FspBI CTAG 3 cut(s) 57, 264, 305
Hin1II CATG 1 cut(s) 79
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 187, 331
Hpy188I TCNGA 4 cut(s) 99, 163, 216, 223
Hpy188III TCNNGA 2 cut(s) 271, 305
Hpy8I GTNNAC 2 cut(s) 187, 331
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 177, 331
HpyF3I CTNAG 2 cut(s) 89, 220
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 4 cut(s) 44, 105, 179, 232
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 2 cut(s) 78, 284
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 57, 264, 305
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 29
MalI GATC 4 cut(s) 46, 107, 181, 234
MboI GATC 4 cut(s) 44, 105, 179, 232
MboII GAAGA 4 cut(s) 83, 112, 115, 320
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 221, 333
MluCI AATT 4 cut(s) 8, 116, 127, 226
MmeI TCCRAC 1 cut(s) 226
MseI TTAA 1 cut(s) 137
NdeII GATC 4 cut(s) 44, 105, 179, 232
NlaIII CATG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 79
PciI ACATGT 1 cut(s) 75
PfeI GAWTC 1 cut(s) 158
PscI ACATGT 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 44
SacI GAGCTC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 137
Sau3AI GATC 4 cut(s) 44, 105, 179, 232
SduI GDGCHC 2 cut(s) 221, 333
SetI ASST 5 cut(s) 36, 67, 221, 255, 288
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 175
SgeI CNNG 6 cut(s) 69, 77, 88, 276, 283, 317
Sse9I AATT 4 cut(s) 8, 116, 127, 226
SspMI CTAG 3 cut(s) 57, 264, 305
SstI GAGCTC 1 cut(s) 221
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 291
TasI AATT 4 cut(s) 8, 116, 127, 226
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 179
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 2 cut(s) 210, 271
TspRI CASTG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 329
XapI RAATTY 1 cut(s) 8
XbaI TCTAGA 1 cut(s) 304
XceI RCATGY 1 cut(s) 79
XspI CTAG 3 cut(s) 57, 264, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.