Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002857

Physical Location & Seq

Genomic Coordinates Reverse (-)

56254973 .. 56262278

Gene Structure 7306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAACTGTTTAGGAGGACAAGAGCTGCTTCCCGAGGTCTTTCAAATAGAGATTAGAATTGTGTATGTGAACTTAATTAAGATATTTCATAAGGAGCCATTCTTCTATGGACATGATAACTACGATCAGCTAGTGAAACTGGCAAAGTTGACGAGGACCGGTGATCTAAGGAGAACGGGTGAATTGTACGGTGGCAAGTATGATATCGCTTCTGCTGCTGGCTTGGATTCTAGGGGCTGCTTCGAAGTTGGATTTCATATCAGTTACTGGGTTTGGTTAGGGTACTCCTGTGACTATCTTGTGGATTTTTTTGTTACAGTCAGTAAGCTGGCACGAGTTCAATGTATGGACAGCTCAAGAATTCTTGAAACTCTTAAGTGCGTCATTATATATAAGTTCAGGGGAAAAAACACTTACACTCAAGAAGAGATTGATGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

147

Amino Acids

17.02

Weight (kDa)

6.29

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02941
rosa_chinensis	RchiOBHm_Chr1g0327601 RchiOBHm_Chr1g0328211 RchiOBHm_Chr1g0328421 RchiOBHm_Chr1g0369921 RchiOBHm_Chr1g0371671 RchiOBHm_Chr1g0382031 RchiOBHm_Chr2g0130721 RchiOBHm_Chr2g0141321 RchiOBHm_Chr4g0401261 RchiOBHm_Chr4g0435071 RchiOBHm_Chr5g0030411 RchiOBHm_Chr5g0036821 RchiOBHm_Chr5g0070441 RchiOBHm_Chr6g0268181 RchiOBHm_Chr7g0222111
rosa_multiflora	Rmu_sc0003249.1_g000016 Rmu_sc0009671.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095380 Rroxscaffold_2G00095630 Rroxscaffold_2G00110260 Rroxscaffold_2G00116450 Rroxscaffold_2G00117310 Rroxscaffold_3G00224120 Rroxscaffold_3G00275380 Rroxscaffold_4G00308610 Rroxscaffold_5G00338190 Rroxscaffold_5G00358130 Rroxscaffold_6G00389220 Rroxscaffold_7G00176840 Rroxscaffold_7G00198260
rosa_rugosa	Rorug03G0282500 Rorug05G0003200 Rorug06G0002200 Rorug07G0046500 Rorug07G0046600
rosa_samantha	Rh4AG337700 Rh4CG049400 Rh4DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	360
AfaI	GTAC	2 cut(s)	188, 284
AflII	CTTAAG	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	44, 341, 368
AluBI	AGCT	4 cut(s)	25, 130, 328, 354
AluI	AGCT	4 cut(s)	25, 130, 328, 354
AlwNI	CAGNNNCTG	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	25, 215, 237
ApoI	RAATTY	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	173, 191
AsuII	TTCGAA	1 cut(s)	243
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	156
BaeI	ACNNNNGTAYC	2 cut(s)	274, 307
BauI	CACGAG	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	12, 202, 224
BfaI	CTAG	2 cut(s)	131, 231
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	3 cut(s)	26, 216, 238
BlsI	GCNGC	3 cut(s)	27, 217, 239
Bme18I	GGWCC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	277
BmuI	ACTGGG	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	340, 405
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	144, 272
BseDI	CCNNGG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	144, 272
BseXI	GCAGC	3 cut(s)	12, 202, 224
BshTI	ACCGGT	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	124, 163
BspLI	GGNNCC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	243
BspTI	CTTAAG	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	144, 272
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	124, 163
BssSI	CACGAG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	8, 191, 319
Bst6I	CTCTTC	1 cut(s)	420
BstAFI	CTTAAG	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	220, 330
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	127, 166
BstMBI	GATC	2 cut(s)	124, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstV1I	GCAGC	3 cut(s)	12, 202, 224
Cac8I	GCNNGC	2 cut(s)	220, 330
CaiI	CAGNNNCTG	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	187, 283
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	25, 97, 130, 222, 237, 328, 354
CviKI_1	RGCY	7 cut(s)	25, 97, 130, 222, 237, 328, 354
CviQI	GTAC	2 cut(s)	187, 283
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	126, 165
DpnII	GATC	2 cut(s)	124, 163
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	1 cut(s)	116
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	26, 216, 238
Fsp4HI	GCNGC	3 cut(s)	26, 216, 238
FspBI	CTAG	2 cut(s)	131, 231
GluI	GCNGC	3 cut(s)	26, 216, 238
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	173, 191
Hpy166II	GTNNAC	2 cut(s)	70, 150
Hpy188III	TCNNGA	4 cut(s)	32, 357, 365, 422
Hpy8I	GTNNAC	2 cut(s)	70, 150
HpyCH4III	ACNGT	3 cut(s)	8, 191, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	2 cut(s)	124, 163
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	7 cut(s)	125, 172, 204, 253, 301, 314, 385
Lsp1109I	GCAGC	3 cut(s)	12, 202, 224
MaeI	CTAG	2 cut(s)	131, 231
MaeIII	GTNAC	3 cut(s)	263, 290, 313
MalI	GATC	2 cut(s)	126, 165
MboI	GATC	2 cut(s)	124, 163
MboII	GAAGA	2 cut(s)	94, 437
MluCI	AATT	4 cut(s)	57, 75, 182, 360
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	8, 28, 147
MseI	TTAA	3 cut(s)	74, 78, 375
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	124, 163
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	243
PacI	TTAATTAA	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	27, 217, 239
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	267
RsaI	GTAC	2 cut(s)	188, 284
RsaNI	GTAC	2 cut(s)	187, 283
SaqAI	TTAA	3 cut(s)	74, 78, 375
SatI	GCNGC	3 cut(s)	26, 216, 238
Sau3AI	GATC	2 cut(s)	124, 163
Sau96I	GGNCC	1 cut(s)	156
SetI	ASST	5 cut(s)	27, 39, 132, 330, 356
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	156
SmlI	CTYRAG	3 cut(s)	355, 374, 420
SmoI	CTYRAG	3 cut(s)	355, 374, 420
Sse9I	AATT	4 cut(s)	57, 75, 182, 360
SspMI	CTAG	2 cut(s)	131, 231
TaaI	ACNGT	3 cut(s)	8, 191, 319
TaqI	TCGA	1 cut(s)	243
TasI	AATT	4 cut(s)	57, 75, 182, 360
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	74, 78, 375
Tru9I	TTAA	3 cut(s)	74, 78, 375
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	3 cut(s)	25, 215, 237
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	17, 77, 245
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	360
XspI	CTAG	2 cut(s)	131, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.