Rmu_sc0003249.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003249.1
OG0002857
Physical Location & Seq
Reverse (-)
59527 .. 62335
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003249.1_g000016.1.cds

Sequence Viewer

Length: 636 bp
atgcttcttgaattaaaactggcggctgatattggcatggacaaagtggttgtggaatgtgattctaaagtcttggttaacttggtgaataatggggtggatgagctgcaccttttgaagactgtgattgattattgtcttcaccttcaggctggtttttcagagtatttaaatcatcttgcttggccgattcccaccgccgatagcaaatcaaacatcgctgttgcgtctcaatccaccttcatgcaccgcagatgcttctggtatcttagagtaaagaagaagaaaagaagcaaaagagggattaaagcgcaaaatcagcaaatttgcctgtgcagatcagtcaacttcgacagatcactgagaccatctcacaatgatctagatgatgatctttatattgatggaaagccttggatgtctagtttccaaatctttttacggctcatcaatatcatttttctagaagaagttatggtcgatttagtacaagaaagtcaggctgcgcgtgaatctgaggttggacgggaatttatgtttcgaggcccaaatcacaccaaaaagcccgaggacgagtttgtgcttcatattccgactcatgatggacaaatggcacgatgtgaatggttagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

211

Amino Acids

24.48

Weight (kDa)

6.45

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 508
AciI CCGC 3 cut(s) 23, 198, 250
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 2 cut(s) 324, 530
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 1 cut(s) 489
AgsI TTSAA 2 cut(s) 11, 118
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 234, 358
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 2 cut(s) 185, 544
ApeKI GCWGC 2 cut(s) 106, 503
ApoI RAATTY 2 cut(s) 324, 530
AspLEI GCGC 2 cut(s) 313, 508
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 2 cut(s) 97, 134
AvaI CYCGRG 1 cut(s) 566
BbsI GAAGAC 2 cut(s) 125, 131
BbvI GCAGC 2 cut(s) 93, 490
BccI CCATC 3 cut(s) 376, 398, 596
BceAI ACGGC 1 cut(s) 458
BcoDI GTCTC 2 cut(s) 234, 358
BfaI CTAG 3 cut(s) 383, 423, 464
BisI GCNGC 3 cut(s) 24, 107, 504
BlsI GCNGC 3 cut(s) 25, 108, 505
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 545
BmsI GCATC 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 125, 131
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 413, 567
Bse1I ACTGG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 413, 567
BseGI GGATG 2 cut(s) 106, 423
BseJI GATNNNNATC 1 cut(s) 390
BseMII CTCAG 2 cut(s) 353, 507
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 93, 490
BsgI GTGCAG 2 cut(s) 92, 355
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 2 cut(s) 187, 546
BsiHKCI CYCGRG 1 cut(s) 566
BsmAI GTCTC 2 cut(s) 234, 358
BsmBI CGTCTC 1 cut(s) 234
BsnI GGCC 2 cut(s) 187, 546
Bso31I GGTCTC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 566
Bsp143I GATC 4 cut(s) 338, 356, 379, 391
BspACI CCGC 3 cut(s) 23, 198, 250
BspANI GGCC 2 cut(s) 187, 546
BspCNI CTCAG 2 cut(s) 354, 508
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 598
BspTNI GGTCTC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 413, 567
BssMI GATC 4 cut(s) 338, 356, 379, 391
BssT1I CCWWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 269, 362, 516
BstF5I GGATG 2 cut(s) 106, 423
BstFNI CGCG 1 cut(s) 508
BstHHI GCGC 2 cut(s) 313, 508
BstKTI GATC 4 cut(s) 341, 359, 382, 394
BstMAI GTCTC 2 cut(s) 234, 358
BstMBI GATC 4 cut(s) 338, 356, 379, 391
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 93, 490
BstV2I GAAGAC 2 cut(s) 125, 131
BsuRI GGCC 2 cut(s) 187, 546
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 106, 423
BtsIMutI CAGTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 598
CfoI GCGC 2 cut(s) 313, 508
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 488
CviAII CATG 3 cut(s) 37, 244, 599
CviJI RGCY 9 cut(s) 26, 106, 152, 187, 412, 445, 503, 546, 565
CviKI_1 RGCY 9 cut(s) 26, 106, 152, 187, 412, 445, 503, 546, 565
CviQI GTAC 1 cut(s) 488
DdeI CTNAG 3 cut(s) 269, 362, 516
DpnI GATC 4 cut(s) 340, 358, 381, 393
DpnII GATC 4 cut(s) 338, 356, 379, 391
DraI TTTAAA 1 cut(s) 171
DraIII CACNNNGTG 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 566
EcoT14I CCWWGG 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 3 cut(s) 40, 247, 602
FaiI YATR 7 cut(s) 38, 245, 399, 476, 536, 588, 600
FatI CATG 3 cut(s) 36, 243, 598
Fnu4HI GCNGC 3 cut(s) 24, 107, 504
FokI GGATG 2 cut(s) 113, 430
Fsp4HI GCNGC 3 cut(s) 24, 107, 504
FspBI CTAG 3 cut(s) 383, 423, 464
GlaI GCGC 2 cut(s) 312, 507
GluI GCNGC 3 cut(s) 24, 107, 504
HaeIII GGCC 2 cut(s) 187, 546
HgaI GACGC 1 cut(s) 216
HhaI GCGC 2 cut(s) 313, 508
Hin1II CATG 3 cut(s) 40, 247, 602
Hin6I GCGC 2 cut(s) 311, 506
HinP1I GCGC 2 cut(s) 311, 506
HincII GTYRAC 2 cut(s) 79, 346
HindII GTYRAC 2 cut(s) 79, 346
HinfI GANTC 4 cut(s) 62, 190, 512, 595
HpaI GTTAAC 1 cut(s) 79
HphI GGTGA 2 cut(s) 97, 134
Hpy166II GTNNAC 2 cut(s) 79, 346
Hpy188I TCNGA 3 cut(s) 163, 517, 594
Hpy188III TCNNGA 4 cut(s) 8, 383, 464, 599
Hpy8I GTNNAC 2 cut(s) 79, 346
HpyAV CCTTC 2 cut(s) 155, 250
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 109, 247, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 3 cut(s) 269, 362, 516
Hsp92II CATG 3 cut(s) 40, 247, 602
HspAI GCGC 2 cut(s) 311, 506
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 4 cut(s) 338, 356, 379, 391
LpnPI CCDG 6 cut(s) 5, 134, 138, 247, 344, 485
Lsp1109I GCAGC 2 cut(s) 93, 490
LweI GCATC 1 cut(s) 245
MaeI CTAG 3 cut(s) 383, 423, 464
MalI GATC 4 cut(s) 340, 358, 381, 393
MboI GATC 4 cut(s) 338, 356, 379, 391
MboII GAAGA 5 cut(s) 130, 131, 292, 295, 479
MluCI AATT 3 cut(s) 11, 324, 530
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 2 cut(s) 502, 617
MnlI CCTC 4 cut(s) 293, 511, 536, 562
MseI TTAA 4 cut(s) 14, 78, 170, 306
MslI CAYNNNNRTG 1 cut(s) 242
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 319
NdeII GATC 4 cut(s) 338, 356, 379, 391
NlaIII CATG 3 cut(s) 40, 247, 602
PagI TCATGA 1 cut(s) 598
PfeI GAWTC 3 cut(s) 62, 190, 512
PkrI GCNGC 3 cut(s) 25, 108, 505
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PspPI GGNCC 1 cut(s) 545
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 4 cut(s) 14, 78, 170, 306
SatI GCNGC 3 cut(s) 24, 107, 504
Sau3AI GATC 4 cut(s) 338, 356, 379, 391
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 589
SetI ASST 5 cut(s) 108, 114, 147, 242, 522
SfaNI GCATC 1 cut(s) 245
SmiI ATTTAAAT 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 3 cut(s) 11, 324, 530
SsiI CCGC 3 cut(s) 23, 198, 250
SspMI CTAG 3 cut(s) 383, 423, 464
StyI CCWWGG 1 cut(s) 413
SwaI ATTTAAAT 1 cut(s) 171
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 3 cut(s) 351, 480, 541
TasI AATT 3 cut(s) 11, 324, 530
TatI WGTACW 1 cut(s) 487
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 3 cut(s) 62, 190, 512
Tru1I TTAA 4 cut(s) 14, 78, 170, 306
Tru9I TTAA 4 cut(s) 14, 78, 170, 306
TscAI CASTG 1 cut(s) 366
TseI GCWGC 2 cut(s) 106, 503
TspDTI ATGAA 2 cut(s) 232, 575
TspRI CASTG 1 cut(s) 366
XapI RAATTY 2 cut(s) 324, 530
XbaI TCTAGA 2 cut(s) 382, 463
XspI CTAG 3 cut(s) 383, 423, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.