Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002857

Physical Location & Seq

Genomic Coordinates Forward (+)

43416712 .. 43432728

Gene Structure 16017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCCGAACCCAATGACAGAAAGATTGGGAAACTTTGTGAATATGCTCGAAGAACCCATTGCGAATTCCCAAGATTACCGAGCATCTAGAGCAAAAATGTTACAAGGAATTGCGAAACGAACAATGCCACTATTTGCAAGTAGTCTACTAGGAATTGTTCGGATTCTCTTGGAACAAACCCGACATGATGAAATGCGGATTCTGGGTTGCAAAACACTTGTCGACTTTATAAATAGCCAGATTGATAGCACACACATGTTCAACCTAGAAGGCCTTATTCCTAAACTCTATGAATTGGCTCAAGAAATGGGAGATGATGAAAGAGCTCTACGTCTACGTTCAGCTGGATTGCAATCACCGGCTTTTACGGAGACGAATGGGTACAAAGAGTTGGCCGTGAAGTTCAGCCGAGACCGAATACTTCCTTTTAGCGTGGCTCTTCTACTTACCAAAGTATCTTGGAGCAAAGTAGAAGAAAGGAAGCTAAATCGTAAAATCTGCCCGTGCAGATCGGTCAAATTCGACAGATCACCGAGACCAGCTCACAACGATCCAGAGGATTATTTTTATATTGATGGAAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.38

Weight (kDa)

8.99

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFR3_ARM	PF21052	33 - 84	5.9e-06	EFR3, armadillo repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02941
rosa_chinensis	RchiOBHm_Chr1g0327601 RchiOBHm_Chr1g0328211 RchiOBHm_Chr1g0328421 RchiOBHm_Chr1g0369921 RchiOBHm_Chr1g0371671 RchiOBHm_Chr1g0382031 RchiOBHm_Chr2g0130721 RchiOBHm_Chr2g0141321 RchiOBHm_Chr4g0401261 RchiOBHm_Chr4g0435071 RchiOBHm_Chr5g0030411 RchiOBHm_Chr5g0036821 RchiOBHm_Chr5g0070441 RchiOBHm_Chr6g0268181 RchiOBHm_Chr7g0222111
rosa_multiflora	Rmu_sc0003249.1_g000016 Rmu_sc0009671.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095380 Rroxscaffold_2G00095630 Rroxscaffold_2G00110260 Rroxscaffold_2G00116450 Rroxscaffold_2G00117310 Rroxscaffold_3G00224120 Rroxscaffold_3G00275380 Rroxscaffold_4G00308610 Rroxscaffold_5G00338190 Rroxscaffold_5G00358130 Rroxscaffold_6G00389220 Rroxscaffold_7G00176840 Rroxscaffold_7G00198260
rosa_rugosa	Rorug03G0282500 Rorug05G0003200 Rorug06G0002200 Rorug07G0046500 Rorug07G0046600
rosa_samantha	Rh4AG337700 Rh4CG049400 Rh4DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccI	GTMKAC	3 cut(s)	145, 222, 334
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	64, 518
AfaI	GTAC	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	4 cut(s)	326, 344, 484, 542
AluI	AGCT	4 cut(s)	326, 344, 484, 542
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	3 cut(s)	365, 405, 529
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	2 cut(s)	271, 393
ApoI	RAATTY	2 cut(s)	64, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AsuHPI	GGTGA	2 cut(s)	348, 522
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BanII	GRGCYC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	328
BccI	CCATC	1 cut(s)	569
BceAI	ACGGC	1 cut(s)	380
BcoDI	GTCTC	3 cut(s)	365, 405, 529
BfaI	CTAG	3 cut(s)	87, 149, 266
BmsI	GCATC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpuEI	CTTGAG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	352
BsaI	GGTCTC	2 cut(s)	405, 529
Bse118I	RCCGGY	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	526
BshFI	GGCC	2 cut(s)	273, 395
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	359
BsmAI	GTCTC	3 cut(s)	365, 405, 529
BsmBI	CGTCTC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	273, 395
Bso31I	GGTCTC	2 cut(s)	405, 529
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	509, 527, 550
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	273, 395
BspPI	GGATC	1 cut(s)	545
BspQI	GCTCTTC	1 cut(s)	444
BspTNI	GGTCTC	2 cut(s)	405, 529
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssMI	GATC	3 cut(s)	509, 527, 550
Bst6I	CTCTTC	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	512, 530, 553
BstMAI	GTCTC	3 cut(s)	365, 405, 529
BstMBI	GATC	3 cut(s)	509, 527, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	273, 395
Cfr10I	RCCGGY	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	185, 256
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	3 cut(s)	511, 529, 552
DpnII	GATC	3 cut(s)	509, 527, 550
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	326
Eco147I	AGGCCT	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	328
Eco31I	GGTCTC	2 cut(s)	405, 529
Eco53kI	GAGCTC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	2 cut(s)	188, 259
FaiI	YATR	6 cut(s)	44, 186, 230, 257, 291, 570
FatI	CATG	2 cut(s)	184, 255
FblI	GTMKAC	3 cut(s)	145, 222, 334
FriOI	GRGCYC	1 cut(s)	328
FspBI	CTAG	3 cut(s)	87, 149, 266
HaeIII	GGCC	2 cut(s)	273, 395
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	2 cut(s)	188, 259
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	163, 199
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	348, 522
Hpy166II	GTNNAC	3 cut(s)	146, 223, 335
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	3 cut(s)	87, 302, 554
Hpy8I	GTNNAC	3 cut(s)	146, 223, 335
HpyAV	CCTTC	1 cut(s)	263
HpyCH4IV	ACGT	2 cut(s)	331, 337
HpyCH4V	TGCA	4 cut(s)	137, 210, 352, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	2 cut(s)	331, 337
Hsp92II	CATG	2 cut(s)	188, 259
Kzo9I	GATC	3 cut(s)	509, 527, 550
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	462
LpnPI	CCDG	6 cut(s)	188, 251, 330, 372, 552, 567
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	3 cut(s)	87, 149, 266
MaeII	ACGT	2 cut(s)	331, 337
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	3 cut(s)	511, 529, 552
MboI	GATC	3 cut(s)	509, 527, 550
MboII	GAAGA	3 cut(s)	62, 431, 485
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	5 cut(s)	64, 108, 153, 293, 518
MnlI	CCTC	1 cut(s)	550
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	3 cut(s)	509, 527, 550
NlaIII	CATG	2 cut(s)	188, 259
NmeAIII	GCCGAG	1 cut(s)	434
NspI	RCATGY	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	273
PciI	ACATGT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	163, 199
PscI	ACATGT	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	328
SalI	GTCGAC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	509, 527, 550
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	7 cut(s)	267, 328, 334, 340, 346, 486, 544
SfaNI	GCATC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	5 cut(s)	64, 108, 153, 293, 518
SseBI	AGGCCT	1 cut(s)	273
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	3 cut(s)	87, 149, 266
SstI	GAGCTC	1 cut(s)	328
StuI	AGGCCT	1 cut(s)	273
TaiI	ACGT	2 cut(s)	334, 340
TaqI	TCGA	3 cut(s)	48, 222, 522
TaqII	GACCGA	2 cut(s)	429, 502
TasI	AATT	5 cut(s)	64, 108, 153, 293, 518
TfiI	GAWTC	2 cut(s)	163, 199
TspDTI	ATGAA	3 cut(s)	204, 306, 333
TspGWI	ACGGA	1 cut(s)	383
XapI	RAATTY	2 cut(s)	64, 518
XbaI	TCTAGA	1 cut(s)	86
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	3 cut(s)	145, 222, 334
XspI	CTAG	3 cut(s)	87, 149, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.