Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002857

Physical Location & Seq

Genomic Coordinates Reverse (-)

64668881 .. 64675258

Gene Structure 6378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG337700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTGTGCTGACATAGGGAACTTGCTTGTTGCATGTATAACCAGATCTTCATGTTATGCCAAGCTGAGGTATGCTCCACCAAATGAATCTCAAGCTATATTTCATAAGGAGCCATTCTTCTATGGACATGATAACTACGATCAGCTAGTGAAACTGGCAAAGAGATTTGATGGAGGAAAATTGAAAAAATTGGGGGCGATGGAGAAGGAGTTGTCGAAGGTGTCGAAAGCGGCGGACGCTATGAAATTGTGTGACCAAGGCGCCGAGTATGATATCGCTTCTGCTGCTGGCTTGGATTCTAGGGGCTGCTTCGAAGTTGGATTTCATATCAGTTACTGGGTTTGGTTAGGGTACTCCTGTGACTATCTTGTGGATTTTTTTGTTACAGAAGTCAGTAAGCTGGCACGAGTTCAATGTATGGACAGCTCAAGAATTCTTGAAACTCTTAAGTGCGTCATTATATATAAGTTCAGGGGAAAAAACACTTACACTCAAGAAGAGATTGATGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

171

Amino Acids

19.33

Weight (kDa)

6.8

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02941
rosa_chinensis	RchiOBHm_Chr1g0327601 RchiOBHm_Chr1g0328211 RchiOBHm_Chr1g0328421 RchiOBHm_Chr1g0369921 RchiOBHm_Chr1g0371671 RchiOBHm_Chr1g0382031 RchiOBHm_Chr2g0130721 RchiOBHm_Chr2g0141321 RchiOBHm_Chr4g0401261 RchiOBHm_Chr4g0435071 RchiOBHm_Chr5g0030411 RchiOBHm_Chr5g0036821 RchiOBHm_Chr5g0070441 RchiOBHm_Chr6g0268181 RchiOBHm_Chr7g0222111
rosa_multiflora	Rmu_sc0003249.1_g000016 Rmu_sc0009671.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095380 Rroxscaffold_2G00095630 Rroxscaffold_2G00110260 Rroxscaffold_2G00116450 Rroxscaffold_2G00117310 Rroxscaffold_3G00224120 Rroxscaffold_3G00275380 Rroxscaffold_4G00308610 Rroxscaffold_5G00338190 Rroxscaffold_5G00358130 Rroxscaffold_6G00389220 Rroxscaffold_7G00176840 Rroxscaffold_7G00198260
rosa_rugosa	Rorug03G0282500 Rorug05G0003200 Rorug06G0002200 Rorug07G0046500 Rorug07G0046600
rosa_samantha	Rh4AG337700 Rh4CG049400 Rh4DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	2 cut(s)	230, 233
AcsI	RAATTY	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	184, 413, 440
AluBI	AGCT	5 cut(s)	64, 95, 145, 400, 426
AluI	AGCT	5 cut(s)	64, 95, 145, 400, 426
AlwNI	CAGNNNCTG	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	284, 306
ApoI	RAATTY	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	312
BaeI	ACNNNNGTAYC	2 cut(s)	343, 376
BanI	GGYRCC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	271, 293
BccI	CCATC	2 cut(s)	164, 193
BfaI	CTAG	2 cut(s)	146, 300
BfoI	RGCGCY	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	3 cut(s)	231, 285, 307
BlsI	GCNGC	3 cut(s)	232, 286, 308
BmiI	GGNNCC	2 cut(s)	111, 262
BmrI	ACTGGG	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	346
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	312
BpuEI	CTTGAG	3 cut(s)	75, 412, 477
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	159, 341
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	159, 341
BseXI	GCAGC	2 cut(s)	271, 293
BshNI	GGYRCC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	66
Bsp119I	TTCGAA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	44, 139
BspACI	CCGC	2 cut(s)	230, 233
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	111, 262
BspT104I	TTCGAA	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	159, 341
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	44, 139
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	289, 402
BstDEI	CTNAG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	2 cut(s)	47, 142
BstMBI	GATC	2 cut(s)	44, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 284
BstNSI	RCATGY	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	271, 293
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	289, 402
CaiI	CAGNNNCTG	1 cut(s)	336
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	2 cut(s)	245, 442
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	33, 51, 128
CviJI	RGCY	8 cut(s)	64, 95, 112, 145, 291, 306, 400, 426
CviKI_1	RGCY	8 cut(s)	64, 95, 112, 145, 291, 306, 400, 426
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	65
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	2 cut(s)	46, 141
DpnII	GATC	2 cut(s)	44, 139
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	3 cut(s)	36, 54, 131
FatI	CATG	3 cut(s)	32, 50, 127
Fnu4HI	GCNGC	3 cut(s)	231, 285, 307
Fsp4HI	GCNGC	3 cut(s)	231, 285, 307
FspBI	CTAG	2 cut(s)	146, 300
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	3 cut(s)	231, 285, 307
HaeII	RGCGCY	1 cut(s)	264
HgaI	GACGC	2 cut(s)	245, 442
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	36, 54, 131
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	2 cut(s)	86, 296
Hpy188III	TCNNGA	3 cut(s)	429, 437, 494
HpyAV	CCTTC	2 cut(s)	199, 211
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 284
HpyF3I	CTNAG	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	36, 54, 131
HspAI	GCGC	1 cut(s)	261
KasI	GGCGCC	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	44, 139
LmnI	GCTCC	2 cut(s)	79, 109
LpnPI	CCDG	7 cut(s)	55, 140, 273, 322, 370, 386, 457
Lsp1109I	GCAGC	2 cut(s)	271, 293
MaeI	CTAG	2 cut(s)	146, 300
MaeIII	GTNAC	4 cut(s)	251, 332, 359, 382
MalI	GATC	2 cut(s)	46, 141
MboI	GATC	2 cut(s)	44, 139
MboII	GAAGA	3 cut(s)	39, 109, 509
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	4 cut(s)	179, 188, 245, 432
Mly113I	GGCGCC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	2 cut(s)	60, 167
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	236, 284
NarI	GGCGCC	1 cut(s)	261
NdeII	GATC	2 cut(s)	44, 139
NlaIII	CATG	3 cut(s)	36, 54, 131
NlaIV	GGNNCC	2 cut(s)	111, 262
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	251, 359
NspI	RCATGY	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	86, 296
PkrI	GCNGC	3 cut(s)	232, 286, 308
PluTI	GGCGCC	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	111, 262
PstNI	CAGNNNCTG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	3 cut(s)	231, 285, 307
Sau3AI	GATC	2 cut(s)	44, 139
SetI	ASST	7 cut(s)	66, 71, 97, 147, 222, 402, 428
SfoI	GGCGCC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	312
SmlI	CTYRAG	4 cut(s)	90, 427, 446, 492
SmoI	CTYRAG	4 cut(s)	90, 427, 446, 492
Sse9I	AATT	4 cut(s)	179, 188, 245, 432
SsiI	CCGC	2 cut(s)	230, 233
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	2 cut(s)	146, 300
StyI	CCWWGG	1 cut(s)	256
TaqI	TCGA	3 cut(s)	215, 224, 312
TasI	AATT	4 cut(s)	179, 188, 245, 432
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	86, 296
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	251, 359
TseI	GCWGC	2 cut(s)	284, 306
Tsp45I	GTSAC	2 cut(s)	251, 359
TspDTI	ATGAA	5 cut(s)	39, 92, 99, 257, 314
Vha464I	CTTAAG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	432
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	2 cut(s)	146, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.