FvH4_2g24750

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001076
Physical Location & Seq
Reverse (-)
20095976 .. 20098337
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24750.t1

Sequence Viewer

Length: 1146 bp
ATGCCGGAAGCGGCGGTGATAATAGTCGGTGCTGGCCCGTCCGGCCTCGCCGTGGCCGGCTGTCTCAGCCGGCTCGAAATCCCATACCTACTTCTCGAAAGAGAAGACTGTTTTGCTTCTCTTTGGAAGAAGTACTCGTACGACCGTCTCCACCTTCACCTTCAGAAGCAGTTCTGTGAGCTCCCCCACATGTCATTCCCGTCCTCTTGTCCCACTTATGTACCCAAAAAACAGTTCATTCAGTACTTGGATGACTACGTTGCACATTTCAAGATCAGTCCCATGTACCAGAGAAACGTCGAGTCTGCAACTTATGATGAGGGTTCTGAGAGATGGGTGGTGAAGGCGATGAACAATGATGAGGGCTGTGGTGGTGAGGTGGAGGTGTTTCTGGGAAGGTTTTTGGTGGTGGCTACTGGTGAAGCAACCAATCCATATGTGCCGGAGATTGAAGGGTTGAGTAGTTTTGATGGGGAGGTTCTTCACTCGACCCGATTCAAATCCGGGGTTGAGTTCAAGAACAAGAATGTTTTGGTTGTCGGCTCTGGGAATTCCGGCATGGAGATTGCTTTGGATCTGGCAAACCATGGTGCAAGGACTTCAATCATTGTTCGGAGCCCGGTTCATTTTCTGTCAAAGAGAATGGTTTACTTGGCCTTGGTTTTGCTGAGATATCTCTCATTAAGCAAAGTTGATACTTTGATGGTTTTGCTTAGCAAGTTGGTTTATGGAGACCTGGCCAAGTATGGGATTGCCAGGCCGAAAGAGGGTCCTTTTTTTATGAAGATCAAGTACGGTAAGTATCCGGCCATTGATGTCGGCACATGTAGTAAGATCAAGTCCGGTGAGATTCAGGTTTTACCTACAGAAATAGGCAGCATTAGAGGAAACGATGTGAAGCTTAAAAATGGCAAGTCATACCAATTTGACTCGATCGTGTTCTGCACTGGGTTCAAGAGATCAACACATTTGTGGCTCAAGGGGGATGATTATCTTCTGAAAGAGGATGGCCTTCCAAGACCTAGTTTTCCAAACCATTGGAAAGGCAAGAATGGTTTATTCTGTGTGGGACTATCAAGAAGAGGATTGTATGGATCTAGTGAGGATGCTCAAAATATAGCCAACGACATCCAGTCATCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

382

Amino Acids

42.42

Weight (kDa)

8.6

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 6 - 214 3.8e-17 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 6 - 207 4.3e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 207 6.3e-24 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 72 - 202 9.7e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 14
AclWI GGATC 2 cut(s) 582, 1102
AcoI YGGCCR 3 cut(s) 54, 738, 807
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 6 cut(s) 134, 140, 222, 245, 287, 794
AfiI CCNNNNNNNGG 3 cut(s) 52, 747, 767
AflIII ACRYGT 2 cut(s) 189, 824
AgsI TTSAA 6 cut(s) 271, 452, 499, 517, 603, 955
AhdI GACNNNNNGTC 1 cut(s) 1132
AjnI CCWGG 2 cut(s) 735, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AleI CACNNNNGTG 1 cut(s) 970
AluBI AGCT 2 cut(s) 181, 901
AluI AGCT 2 cut(s) 181, 901
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 68, 152, 726
AlwI GGATC 2 cut(s) 582, 1102
AoxI GGCC 8 cut(s) 34, 43, 54, 654, 738, 758, 807, 1009
ApeKI GCWGC 1 cut(s) 876
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 35, 770
AsuC2I CCSGG 2 cut(s) 505, 620
AsuHPI GGTGA 6 cut(s) 28, 149, 352, 386, 431, 857
AvaII GGWCC 1 cut(s) 770
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 1 cut(s) 740
BanII GRGCYC 2 cut(s) 183, 620
BarI GAAGNNNNNNTAC 4 cut(s) 122, 154, 776, 808
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 888
BccI CCATC 4 cut(s) 327, 464, 697, 1001
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 737, 757
BciVI GTATCC 1 cut(s) 813
BcnI CCSGG 2 cut(s) 505, 620
BcoDI GTCTC 3 cut(s) 68, 152, 726
BfaI CTAG 2 cut(s) 1023, 1098
BfmI CTRYAG 1 cut(s) 864
BfuI GTATCC 1 cut(s) 813
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 2 cut(s) 12, 877
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 2 cut(s) 13, 878
BmcAI AGTACT 2 cut(s) 134, 245
Bme1390I CCNGG 4 cut(s) 505, 620, 737, 757
Bme18I GGWCC 1 cut(s) 770
BmeRI GACNNNNNGTC 1 cut(s) 1132
BmgT120I GGNCC 2 cut(s) 35, 770
BmiI GGNNCC 2 cut(s) 617, 771
BmrFI CCNGG 4 cut(s) 505, 620, 737, 757
BmrI ACTGGG 1 cut(s) 957
BmsI GCATC 1 cut(s) 1096
BmuI ACTGGG 1 cut(s) 957
BpiI GAAGAC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 713
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 2 cut(s) 505, 620
BsaBI GATNNNNATC 2 cut(s) 499, 990
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 4 cut(s) 51, 504, 586, 657
BsaWI WCCGGW 1 cut(s) 842
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 747, 767
Bse118I RCCGGY 2 cut(s) 56, 69
Bse1I ACTGG 3 cut(s) 421, 952, 1132
Bse8I GATNNNNATC 2 cut(s) 499, 990
BseBI CCWGG 2 cut(s) 737, 757
BseDI CCNNGG 4 cut(s) 51, 504, 586, 657
BseGI GGATG 5 cut(s) 256, 991, 1012, 1111, 1128
BseJI GATNNNNATC 2 cut(s) 499, 990
BseLI CCNNNNNNNGG 3 cut(s) 52, 747, 767
BseMII CTCAG 3 cut(s) 79, 318, 659
BseNI ACTGG 3 cut(s) 421, 952, 1132
BseXI GCAGC 1 cut(s) 888
BsgI GTGCAG 1 cut(s) 928
Bsh1285I CGRYCG 2 cut(s) 145, 936
BshFI GGCC 8 cut(s) 36, 45, 56, 656, 740, 760, 809, 1011
BsiEI CGRYCG 2 cut(s) 145, 936
BsiHKAI GWGCWC 1 cut(s) 183
BsiWI CGTACG 1 cut(s) 138
BslFI GGGAC 3 cut(s) 195, 264, 1083
BslI CCNNNNNNNGG 3 cut(s) 52, 747, 767
BsmAI GTCTC 3 cut(s) 68, 152, 726
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 195, 264, 1083
BsnI GGCC 8 cut(s) 36, 45, 56, 656, 740, 760, 809, 1011
Bso31I GGTCTC 1 cut(s) 726
Bsp1286I GDGCHC 2 cut(s) 183, 620
Bsp143I GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
Bsp1720I GCTNAGC 1 cut(s) 713
Bsp19I CCATGG 1 cut(s) 586
BspACI CCGC 2 cut(s) 11, 14
BspANI GGCC 8 cut(s) 36, 45, 56, 656, 740, 760, 809, 1011
BspCNI CTCAG 3 cut(s) 78, 319, 660
BspLI GGNNCC 2 cut(s) 617, 771
BspPI GGATC 2 cut(s) 582, 1102
BspTNI GGTCTC 1 cut(s) 726
BsrFI RCCGGY 2 cut(s) 56, 69
BsrI ACTGG 3 cut(s) 421, 952, 1132
BssAI RCCGGY 2 cut(s) 56, 69
BssECI CCNNGG 4 cut(s) 51, 504, 586, 657
BssMI GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
BssT1I CCWWGG 2 cut(s) 586, 657
Bst2UI CCWGG 2 cut(s) 737, 757
Bst4CI ACNGT 4 cut(s) 110, 146, 234, 797
Bst6I CTCTTC 1 cut(s) 1075
BstC8I GCNNGC 3 cut(s) 34, 58, 71
BstDEI CTNAG 4 cut(s) 65, 327, 668, 713
BstDSI CCRYGG 2 cut(s) 51, 586
BstF5I GGATG 5 cut(s) 256, 991, 1012, 1111, 1128
BstKTI GATC 7 cut(s) 276, 577, 789, 837, 936, 962, 1097
BstMAI GTCTC 3 cut(s) 68, 152, 726
BstMBI GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
BstMCI CGRYCG 2 cut(s) 145, 936
BstMWI GCNNNNNNNGC 2 cut(s) 42, 66
BstNI CCWGG 2 cut(s) 737, 757
BstNSI RCATGY 2 cut(s) 193, 828
BstSCI CCNGG 4 cut(s) 503, 618, 735, 755
BstSFI CTRYAG 1 cut(s) 864
BstV1I GCAGC 1 cut(s) 888
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 574, 1094
BstXI CCANNNNNNTGG 1 cut(s) 1038
BstYI RGATCY 2 cut(s) 574, 1094
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 8 cut(s) 36, 45, 56, 656, 740, 760, 809, 1011
BtgI CCRYGG 2 cut(s) 51, 586
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 5 cut(s) 256, 991, 1012, 1111, 1128
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 3 cut(s) 34, 58, 71
Cfr10I RCCGGY 2 cut(s) 56, 69
Cfr13I GGNCC 2 cut(s) 35, 770
Csp6I GTAC 6 cut(s) 133, 139, 221, 244, 286, 793
CviAII CATG 5 cut(s) 190, 283, 559, 587, 825
CviQI GTAC 6 cut(s) 133, 139, 221, 244, 286, 793
DdeI CTNAG 4 cut(s) 65, 327, 668, 713
DpnI GATC 7 cut(s) 275, 576, 788, 836, 935, 961, 1096
DpnII GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
DriI GACNNNNNGTC 1 cut(s) 1132
EaeI YGGCCR 3 cut(s) 54, 738, 807
Eam1104I CTCTTC 1 cut(s) 1075
Eam1105I GACNNNNNGTC 1 cut(s) 1132
EarI CTCTTC 1 cut(s) 1075
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 586, 657
Eco24I GRGCYC 2 cut(s) 183, 620
Eco31I GGTCTC 1 cut(s) 726
Eco32I GATATC 1 cut(s) 674
Eco47I GGWCC 1 cut(s) 770
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 735, 755
EcoRV GATATC 1 cut(s) 674
EcoT14I CCWWGG 2 cut(s) 586, 657
EcoT38I GRGCYC 2 cut(s) 183, 620
ErhI CCWWGG 2 cut(s) 586, 657
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 5 cut(s) 193, 286, 562, 590, 828
FaqI GGGAC 3 cut(s) 195, 264, 1083
FatI CATG 5 cut(s) 189, 282, 558, 586, 824
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 12, 877
FokI GGATG 5 cut(s) 263, 998, 1019, 1115, 1118
FriOI GRGCYC 2 cut(s) 183, 620
Fsp4HI GCNGC 2 cut(s) 12, 877
FspBI CTAG 2 cut(s) 1023, 1098
GluI GCNGC 2 cut(s) 12, 877
HaeIII GGCC 8 cut(s) 36, 45, 56, 656, 740, 760, 809, 1011
Hin1II CATG 5 cut(s) 193, 286, 562, 590, 828
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 4 cut(s) 302, 495, 850, 929
HphI GGTGA 6 cut(s) 28, 149, 352, 386, 431, 857
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 165, 328, 615, 999
Hpy188III TCNNGA 5 cut(s) 95, 271, 517, 955, 1077
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 6 cut(s) 164, 170, 337, 390, 446, 1022
HpyCH4III ACNGT 4 cut(s) 110, 146, 234, 797
HpyCH4IV ACGT 2 cut(s) 258, 297
HpyCH4V TGCA 4 cut(s) 263, 308, 593, 945
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 66
HpyF3I CTNAG 4 cut(s) 65, 327, 668, 713
HpySE526I ACGT 2 cut(s) 258, 297
Hsp92II CATG 5 cut(s) 193, 286, 562, 590, 828
KroI GCCGGC 2 cut(s) 56, 69
KroNI GCCGGC 2 cut(s) 58, 71
Kzo9I GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
LmnI GCTCC 2 cut(s) 186, 615
Lsp1109I GCAGC 1 cut(s) 888
LweI GCATC 1 cut(s) 1096
MaeI CTAG 2 cut(s) 1023, 1098
MaeII ACGT 2 cut(s) 258, 297
MalI GATC 7 cut(s) 275, 576, 788, 836, 935, 961, 1096
MboI GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
MboII GAAGA 6 cut(s) 116, 139, 473, 796, 986, 1092
MflI RGATCY 2 cut(s) 574, 1094
MhlI GDGCHC 2 cut(s) 183, 620
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 2 cut(s) 550, 923
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 2 cut(s) 311, 923
Mox20I TGGCCA 1 cut(s) 740
MroNI GCCGGC 2 cut(s) 56, 69
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 740
MseI TTAA 2 cut(s) 683, 903
MslI CAYNNNNRTG 1 cut(s) 970
Msp20I TGGCCA 1 cut(s) 740
MspR9I CCNGG 4 cut(s) 505, 620, 737, 757
MvaI CCWGG 2 cut(s) 737, 757
MwoI GCNNNNNNNGC 2 cut(s) 42, 66
NaeI GCCGGC 2 cut(s) 58, 71
NciI CCSGG 2 cut(s) 505, 620
NcoI CCATGG 1 cut(s) 586
NdeI CATATG 1 cut(s) 436
NdeII GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
NgoMIV GCCGGC 2 cut(s) 56, 69
NlaIII CATG 5 cut(s) 193, 286, 562, 590, 828
NlaIV GGNNCC 2 cut(s) 617, 771
NspI RCATGY 2 cut(s) 193, 828
OliI CACNNNNGTG 1 cut(s) 970
PciI ACATGT 2 cut(s) 189, 824
PdiI GCCGGC 2 cut(s) 58, 71
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 495, 850
Pfl23II CGTACG 1 cut(s) 138
PkrI GCNGC 2 cut(s) 13, 878
Ple19I CGATCG 1 cut(s) 936
PleI GAGTC 2 cut(s) 310, 923
PpsI GAGTC 2 cut(s) 310, 923
PpuMI RGGWCCY 1 cut(s) 770
PscI ACATGT 2 cut(s) 189, 824
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 2 cut(s) 735, 755
PspGI CCWGG 2 cut(s) 735, 755
PspLI CGTACG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 617, 771
PspPI GGNCC 2 cut(s) 35, 770
PspPPI RGGWCCY 1 cut(s) 770
PsuI RGATCY 2 cut(s) 574, 1094
PvuI CGATCG 1 cut(s) 936
RsaI GTAC 6 cut(s) 134, 140, 222, 245, 287, 794
RsaNI GTAC 6 cut(s) 133, 139, 221, 244, 286, 793
RseI CAYNNNNRTG 1 cut(s) 970
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 683, 903
SatI GCNGC 2 cut(s) 12, 877
Sau3AI GATC 7 cut(s) 273, 574, 786, 834, 933, 959, 1094
Sau96I GGNCC 2 cut(s) 35, 770
ScaI AGTACT 2 cut(s) 134, 245
SchI GAGTC 2 cut(s) 311, 923
ScrFI CCNGG 4 cut(s) 505, 620, 737, 757
SduI GDGCHC 2 cut(s) 183, 620
SfaNI GCATC 1 cut(s) 1096
SfcI CTRYAG 1 cut(s) 864
SfiI GGCCNNNNNGGCC 1 cut(s) 42
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 1 cut(s) 970
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 2 cut(s) 550, 923
SsiI CCGC 2 cut(s) 11, 14
SspMI CTAG 2 cut(s) 1023, 1098
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 4 cut(s) 503, 618, 735, 755
StyI CCWWGG 2 cut(s) 586, 657
TaaI ACNGT 4 cut(s) 110, 146, 234, 797
TaiI ACGT 2 cut(s) 261, 300
TaqI TCGA 5 cut(s) 75, 96, 300, 488, 932
TasI AATT 2 cut(s) 550, 923
TatI WGTACW 2 cut(s) 132, 243
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 495, 850
Tru1I TTAA 2 cut(s) 683, 903
Tru9I TTAA 2 cut(s) 683, 903
TscAI CASTG 1 cut(s) 952
TseI GCWGC 1 cut(s) 876
TspDTI ATGAA 4 cut(s) 226, 365, 614, 797
TspRI CASTG 1 cut(s) 952
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 1 cut(s) 550
XceI RCATGY 2 cut(s) 193, 828
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 2 cut(s) 1023, 1098
ZrmI AGTACT 2 cut(s) 134, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.