Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001076

Physical Location & Seq

Genomic Coordinates Forward (+)

16202669 .. 16206124

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGATCCGGCATATCTTCAAAAAAGCAAGAAGCTTCCGTCAAGGTCAAGATTCACTGTTACTTGAGAATAAAATCGGTGATCGATTAACTTCGACAACAGTGAACGGTCGGTTTATCTATCTGAGGATCGGAGGGTGCATTAAATCGAGGTTGGCTCTGGGAATTCCGGCATGGAAATTGCTTTGGATCTGGCAAACGATATGGTGCAAAGACTTCAATCATTGTTCAAAGCTCGGCTCATTTTTTGTCAAGAAGGATGGTTTACTTGGCCTTGGTTTTGTTAAGATATCTTTCATCAAGCGAAGTGGATTCTTTGATGGTTTTGCTTCACAAGCTGGTTTATGGAGACCTGACCCAATCCGACGAGATTCAGGTTCTACCCACAGAAATAGGCAGCATAAGAGGAAGCGATGTGGAACTCAAAAAGGGGAAGTCATTACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCTCAACACGTCAACAAGTTTGTGGCTCAAGATGATTATCTTTTGAATGAAGATGGGATTCCAAGACCAAGTTCTCCTAACCATTCGAAGGGACAGAAGGGCCTGGTTTTGATTTCATGCACAGGCCTGAAATGCACTTCTTTGTTGTCTGCTTTCCATCGATTTGGAGCCAAAATTTGTTTAATCACCTCTCTTCGGGATACTTGCTACATTGAGATCCTTCCTAAAGACAGGAATCCTACACGAGAGCTTTGGCTGAGCTTTTGGAGCGAAGTGCAGGACCGAAAACTAGAAATTGTTACAGGCAATCTACAGGGCATGCATGCAGGTGGAACACCGCCGCTTTATCATGGGATGCAAAGTGTTGAGATGCATTATGGAAATATGTTTAACCTTTATAATCCATCAGCAGAATATGTGCCCGGTCATGACAGGCAGCAGTCTCAGATTGGCATGCATGAACCGCAAATTGGACTAGCAAATGAGTCCCTATGCAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042762 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

325

Amino Acids

36.67

Weight (kDa)

9.68

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001076)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24750 FvH4_2g24750
malus_domestica	MD00G1056000.v1.1
prunus_persica	Prupe.8G252500_v2.0.a1 Prupe.8G252500_v2.0.a1
pyrus_communis	pycom03g21970 pycom03g21980
rosa_chinensis	RchiOBHm_Chr2g0097031 RchiOBHm_Chr4g0418611 RchiOBHm_Chr5g0016501 RchiOBHm_Chr6g0271581 RchiOBHm_Chr6g0271731 RchiOBHm_Chr6g0271741 RchiOBHm_Chr6g0283091 RchiOBHm_Chr6g0292571
rosa_laevigata	RLG00000001339 RLG00000007851 RLG00000012008 RLG00000013718 RLG00000013733 RLG00000017406
rosa_multiflora	Rmu_co8394867.1_g000001 Rmu_sc0000239.1_g000054 Rmu_sc0000515.1_g000003
rosa_roxburghii	Rroxscaffold_173G00435070 Rroxscaffold_1G00056640 Rroxscaffold_6G00413030 Rroxscaffold_6G00413040 Rroxscaffold_7G00174920 Rroxscaffold_7G00196640
rosa_rugosa	Rorug06G0062000 Rorug06G0228200 Rorug07G0130700
rosa_samantha	Rh2AG005700 Rh2AG179700 Rh2AG504500 Rh2BG188500 Rh2CG490400 Rh2DG113900 Rh2DG185500 Rh4CG227800 Rh4DG215100 Rh5CG138200 Rh6AG180900 Rh6AG341300 Rh6BG186500 Rh6BG186600 Rh6BG348700 Rh6CG180600 Rh6CG355600 Rh6DG172400 Rh6DG172900 Rh6DG259400 Rh6DG341400
rosa_wichuraiana	Rw0G015050 Rw2G014040 Rw4G018380 Rw6G006990 Rw6G015520 Rw6G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AarI	CACCTGC	1 cut(s)	788
Acc36I	ACCTGC	1 cut(s)	788
AciI	CCGC	3 cut(s)	809, 812, 935
AclWI	GGATC	3 cut(s)	134, 194, 682
AcsI	RAATTY	2 cut(s)	162, 645
AfiI	CCNNNNNNNGG	3 cut(s)	559, 666, 941
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	19, 217, 228, 517
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	4 cut(s)	526, 558, 924, 956
AluBI	AGCT	5 cut(s)	33, 232, 335, 721, 732
AluI	AGCT	5 cut(s)	33, 232, 335, 721, 732
Alw26I	GTCTC	2 cut(s)	340, 918
AlwI	GGATC	3 cut(s)	134, 194, 682
AoxI	GGCC	3 cut(s)	268, 571, 595
ApeKI	GCWGC	2 cut(s)	394, 907
ApoI	RAATTY	2 cut(s)	162, 645
AspS9I	GGNCC	2 cut(s)	571, 751
AsuC2I	CCSGG	1 cut(s)	894
AsuHPI	GGTGA	2 cut(s)	89, 649
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	751
BaeGI	GKGCMC	1 cut(s)	894
BauI	CACGAG	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	406, 919
BccI	CCATC	6 cut(s)	251, 311, 460, 518, 636, 883
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	894
BcoDI	GTCTC	2 cut(s)	340, 918
BfaI	CTAG	2 cut(s)	761, 947
BfmI	CTRYAG	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	788
BfuI	GTATCC	1 cut(s)	664
BisI	GCNGC	3 cut(s)	395, 812, 908
BlpI	GCTNAGC	1 cut(s)	728
BlsI	GCNGC	3 cut(s)	396, 813, 909
Bme1390I	CCNGG	2 cut(s)	575, 894
Bme18I	GGWCC	1 cut(s)	751
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	571, 751
BmiI	GGNNCC	1 cut(s)	640
BmrFI	CCNGG	2 cut(s)	575, 894
BmsI	GCATC	2 cut(s)	816, 831
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
Bpu1102I	GCTNAGC	1 cut(s)	728
Bpu14I	TTCGAA	1 cut(s)	557
BpuEI	CTTGAG	2 cut(s)	83, 483
BpuMI	CCSGG	1 cut(s)	894
Bsa29I	ATCGAT	2 cut(s)	82, 631
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	559, 666, 941
Bse1I	ACTGG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	575
BseCI	ATCGAT	2 cut(s)	82, 631
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	262, 831
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	3 cut(s)	559, 666, 941
BseMII	CTCAG	3 cut(s)	113, 719, 929
BseNI	ACTGG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	894
BseXI	GCAGC	2 cut(s)	406, 919
BsgI	GTGCAG	2 cut(s)	447, 767
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	270, 573, 597
BshVI	ATCGAT	2 cut(s)	82, 631
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	4 cut(s)	7, 167, 467, 894
BslFI	GGGAC	2 cut(s)	576, 943
BslI	CCNNNNNNNGG	3 cut(s)	559, 666, 941
BsmAI	GTCTC	2 cut(s)	340, 918
BsmFI	GGGAC	2 cut(s)	576, 943
BsnI	GGCC	3 cut(s)	270, 573, 597
Bso31I	GGTCTC	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	5 cut(s)	3, 79, 126, 186, 687
Bsp1720I	GCTNAGC	1 cut(s)	728
BspACI	CCGC	3 cut(s)	809, 812, 935
BspANI	GGCC	3 cut(s)	270, 573, 597
BspCNI	CTCAG	3 cut(s)	114, 720, 928
BspDI	ATCGAT	2 cut(s)	82, 631
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	3 cut(s)	134, 194, 682
BspT104I	TTCGAA	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	3, 79, 126, 186, 687
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	271
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	4 cut(s)	57, 100, 107, 972
Bst6I	CTCTTC	1 cut(s)	669
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	791, 795, 926
BstDEI	CTNAG	3 cut(s)	122, 728, 915
BstF5I	GGATG	2 cut(s)	262, 831
BstKTI	GATC	5 cut(s)	6, 82, 129, 189, 690
BstMAI	GTCTC	2 cut(s)	340, 918
BstMBI	GATC	5 cut(s)	3, 79, 126, 186, 687
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 603, 738, 934
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	3 cut(s)	793, 797, 928
BstSCI	CCNGG	2 cut(s)	573, 892
BstSFI	CTRYAG	1 cut(s)	782
BstSLI	GKGCMC	1 cut(s)	894
BstV1I	GCAGC	2 cut(s)	406, 919
BstX2I	RGATCY	2 cut(s)	186, 687
BstXI	CCANNNNNNTGG	1 cut(s)	635
BstYI	RGATCY	2 cut(s)	186, 687
Bsu15I	ATCGAT	2 cut(s)	82, 631
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	3 cut(s)	270, 573, 597
BsuTUI	ATCGAT	2 cut(s)	82, 631
BtgZI	GCGATG	1 cut(s)	424
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	262, 831
BtsIMutI	CAGTG	2 cut(s)	53, 105
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	3 cut(s)	791, 795, 926
CciI	TCATGA	1 cut(s)	898
Cfr13I	GGNCC	2 cut(s)	571, 751
ClaI	ATCGAT	2 cut(s)	82, 631
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	8 cut(s)	171, 588, 790, 794, 821, 899, 925, 929
DdeI	CTNAG	3 cut(s)	122, 728, 915
DpnI	GATC	5 cut(s)	5, 81, 128, 188, 689
DpnII	GATC	5 cut(s)	3, 79, 126, 186, 687
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	751
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	3 cut(s)	795, 846, 930
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	8 cut(s)	174, 591, 793, 797, 824, 902, 928, 932
FaqI	GGGAC	2 cut(s)	576, 943
FatI	CATG	8 cut(s)	170, 587, 789, 793, 820, 898, 924, 928
Fnu4HI	GCNGC	3 cut(s)	395, 812, 908
FokI	GGATG	2 cut(s)	269, 838
Fsp4HI	GCNGC	3 cut(s)	395, 812, 908
FspBI	CTAG	2 cut(s)	761, 947
GluI	GCNGC	3 cut(s)	395, 812, 908
HaeIII	GGCC	3 cut(s)	270, 573, 597
HapII	CCGG	4 cut(s)	7, 167, 467, 894
Hin1II	CATG	8 cut(s)	174, 591, 793, 797, 824, 902, 928, 932
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	8 cut(s)	50, 309, 368, 448, 470, 529, 706, 956
HpaII	CCGG	4 cut(s)	7, 167, 467, 894
HphI	GGTGA	2 cut(s)	89, 649
Hpy166II	GTNNAC	3 cut(s)	103, 263, 484
Hpy188I	TCNGA	4 cut(s)	123, 131, 362, 918
Hpy188III	TCNNGA	5 cut(s)	47, 250, 500, 668, 899
Hpy8I	GTNNAC	3 cut(s)	103, 263, 484
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	4 cut(s)	247, 553, 562, 701
HpyCH4III	ACNGT	4 cut(s)	57, 100, 107, 972
HpyCH4IV	ACGT	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 603, 738, 934
HpyF3I	CTNAG	3 cut(s)	122, 728, 915
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	8 cut(s)	174, 591, 793, 797, 824, 902, 928, 932
Kzo9I	GATC	5 cut(s)	3, 79, 126, 186, 687
LmnI	GCTCC	2 cut(s)	638, 738
Lsp1109I	GCAGC	2 cut(s)	406, 919
LweI	GCATC	2 cut(s)	816, 831
MaeI	CTAG	2 cut(s)	761, 947
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	57, 769
MalI	GATC	5 cut(s)	5, 81, 128, 188, 689
MboI	GATC	5 cut(s)	3, 79, 126, 186, 687
MboII	GAAGA	3 cut(s)	7, 533, 656
MflI	RGATCY	2 cut(s)	186, 687
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	5 cut(s)	162, 176, 645, 765, 939
MlyI	GAGTC	2 cut(s)	457, 965
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	5 cut(s)	117, 125, 141, 396, 670
Mph1103I	ATGCAT	3 cut(s)	795, 846, 930
MseI	TTAA	5 cut(s)	86, 141, 282, 653, 861
MslI	CAYNNNNRTG	1 cut(s)	798
MspI	CCGG	4 cut(s)	7, 167, 467, 894
MspR9I	CCNGG	2 cut(s)	575, 894
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	4 cut(s)	332, 603, 738, 934
NciI	CCSGG	1 cut(s)	894
NdeII	GATC	5 cut(s)	3, 79, 126, 186, 687
NlaIII	CATG	8 cut(s)	174, 591, 793, 797, 824, 902, 928, 932
NlaIV	GGNNCC	1 cut(s)	640
NmeAIII	GCCGAG	1 cut(s)	213
NsiI	ATGCAT	3 cut(s)	795, 846, 930
NspI	RCATGY	3 cut(s)	793, 797, 928
NspV	TTCGAA	1 cut(s)	557
PaeI	GCATGC	3 cut(s)	793, 797, 928
PagI	TCATGA	1 cut(s)	898
PaqCI	CACCTGC	1 cut(s)	788
PceI	AGGCCT	1 cut(s)	597
PfeI	GAWTC	6 cut(s)	50, 309, 368, 470, 529, 706
PkrI	GCNGC	3 cut(s)	396, 813, 909
PleI	GAGTC	2 cut(s)	456, 964
PpsI	GAGTC	2 cut(s)	456, 964
PsiI	TTATAA	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	2 cut(s)	571, 751
PsuI	RGATCY	2 cut(s)	186, 687
RseI	CAYNNNNRTG	1 cut(s)	798
SaqAI	TTAA	5 cut(s)	86, 141, 282, 653, 861
SatI	GCNGC	3 cut(s)	395, 812, 908
Sau3AI	GATC	5 cut(s)	3, 79, 126, 186, 687
Sau96I	GGNCC	2 cut(s)	571, 751
SchI	GAGTC	2 cut(s)	457, 965
ScrFI	CCNGG	2 cut(s)	575, 894
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	2 cut(s)	816, 831
SfcI	CTRYAG	1 cut(s)	782
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	798
SmlI	CTYRAG	2 cut(s)	62, 498
SmoI	CTYRAG	2 cut(s)	62, 498
SphI	GCATGC	3 cut(s)	793, 797, 928
Sse9I	AATT	5 cut(s)	162, 176, 645, 765, 939
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	3 cut(s)	809, 812, 935
SspMI	CTAG	2 cut(s)	761, 947
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	2 cut(s)	573, 892
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	4 cut(s)	57, 100, 107, 972
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	5 cut(s)	82, 92, 146, 557, 631
TaqII	GACCGA	1 cut(s)	768
TasI	AATT	5 cut(s)	162, 176, 645, 765, 939
TauI	GCSGC	1 cut(s)	814
TfiI	GAWTC	6 cut(s)	50, 309, 368, 470, 529, 706
Tru1I	TTAA	5 cut(s)	86, 141, 282, 653, 861
Tru9I	TTAA	5 cut(s)	86, 141, 282, 653, 861
TscAI	CASTG	2 cut(s)	60, 105
TseI	GCWGC	2 cut(s)	394, 907
TspDTI	ATGAA	4 cut(s)	283, 534, 576, 945
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	60, 105
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	162, 645
XceI	RCATGY	3 cut(s)	793, 797, 928
XspI	CTAG	2 cut(s)	761, 947
Zsp2I	ATGCAT	3 cut(s)	795, 846, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.