Rh6BG348700

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001076
Physical Location & Seq
Reverse (-)
57884260 .. 57885702
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG348700.1

Sequence Viewer

Length: 1149 bp
ATGCCGGAAGCGGTGGTGATAATAGTCGGGGCCGGCCCGTCCGGCCTGGCCGTGGCTGGCTGTCTCAGCCGGCTCGAAATCCCATACCTACTTCTTGAAAGAGAGGACTGTTTTGCTTCTCTTTGGAAGAAGTACTCCTACGACCGTCTCCACCTTCACCTTCAGAAGCAATTCTGTGAGCTCCCCCACATGTCATTCCCGTCCTCTTGTCCCACGTATCTACCCAAAAAACAGTACATTCAGTACTTGGATGACTACGTTGCACATTTCAAGATCAGTCCCATGTACCAGAGAAATGTCGAGTGTGCAAGTTATGATCAGGATTCTGAGAGATGGGTTGTGAAGACGATGAACAAGGAGGAGGGCTGTGGTGGTGAGGAGGAGGAGTTTTTGGGAAGGTTTTTGGTGGTGGCTACTGGTGAAACAACAAATCCATATGTGCCAGAGATTGAAGGGTTGAGTAGTTTTGATGGGGAGGTTCTTCACTCGACCCGATTCAAATCCGGGGTTGAGTTCAAGAACAAGAATGTTTTGGTTGTCGGCTCTGGGAATTCCGGCATGGAAATTGCTTTGGATCTGGCAAACCATGGTGCAAAGACGACTTCAATCATTGTTCGAAGCCCGGTTCATTTTTTGTCAAGGAGGATGGTTTACTTGGCCTTGGTTTTGTTGAGATATCTTTCATTAAGCAAAGTGGATTCTTTGATGGTTTTGCTTAGCAAGCTGGTTTATGGAGACCTGACCAAGTATGGGATAGCCAGGCCAAAAGAGGGCCCTTTCTTTATGAAGATCAAGTACGGCAAGTATCCGGCCATTGATGTCGGCACCTGTAGTAAGATCAAGTCCGGCGAGATTCAGATTTTACCCGCAGAAATAGGCAGCATCAGAGGAAACGATGTGGAACTTAAAAATGGGAAGTCATACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGAGATCAACAAGTTTGTGGCTCAAGGGGGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACCAAGTTTTCCAAACCATTGGAAAGGACAGAAGGGTTTGTATTGTGTGGGACTATCAAGAAGAGGACTATACGGATCTAGGGAGGATGCTCAAAACATAGCCAATGATATCAAGTCGTCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

382

Amino Acids

42.85

Weight (kDa)

8.41

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 6 - 214 6.4e-17 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 6 - 206 1.3e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 209 4.1e-25 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 72 - 204 3.3e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 824
AciI CCGC 2 cut(s) 11, 867
AclWI GGATC 2 cut(s) 582, 1105
AcoI YGGCCR 2 cut(s) 48, 810
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 5 cut(s) 134, 236, 245, 287, 797
AfiI CCNNNNNNNGG 3 cut(s) 52, 750, 770
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 8 cut(s) 98, 271, 452, 499, 517, 606, 958, 1003
AjnI CCWGG 2 cut(s) 45, 758
AluBI AGCT 2 cut(s) 181, 724
AluI AGCT 2 cut(s) 181, 724
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 68, 152, 729
AlwI GGATC 2 cut(s) 582, 1105
AoxI GGCC 8 cut(s) 30, 34, 43, 48, 657, 761, 772, 810
ApaI GGGCCC 1 cut(s) 776
ApeKI GCWGC 1 cut(s) 879
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 4 cut(s) 30, 35, 772, 773
AsuC2I CCSGG 2 cut(s) 505, 623
AsuHPI GGTGA 4 cut(s) 28, 149, 386, 431
AsuII TTCGAA 1 cut(s) 616
BaeGI GKGCMC 1 cut(s) 776
BanI GGYRCC 1 cut(s) 824
BanII GRGCYC 2 cut(s) 183, 776
BarI GAAGNNNNNNTAC 4 cut(s) 122, 154, 779, 811
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 891
BccI CCATC 6 cut(s) 327, 464, 640, 700, 944, 1004
BceAI ACGGC 2 cut(s) 35, 814
BciT130I CCWGG 2 cut(s) 47, 760
BciVI GTATCC 1 cut(s) 816
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 2 cut(s) 505, 623
BcoDI GTCTC 3 cut(s) 68, 152, 729
BfaI CTAG 1 cut(s) 1101
BfmI CTRYAG 1 cut(s) 829
BfuI GTATCC 1 cut(s) 816
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 1 cut(s) 880
BlpI GCTNAGC 1 cut(s) 716
BlsI GCNGC 1 cut(s) 881
BmcAI AGTACT 2 cut(s) 134, 245
Bme1390I CCNGG 4 cut(s) 47, 505, 623, 760
BmgT120I GGNCC 4 cut(s) 30, 35, 772, 773
BmiI GGNNCC 3 cut(s) 31, 774, 826
BmrFI CCNGG 4 cut(s) 47, 505, 623, 760
BmsI GCATC 2 cut(s) 891, 1099
BpiI GAAGAC 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 716
Bpu14I TTCGAA 1 cut(s) 616
BpuEI CTTGAG 1 cut(s) 965
BpuMI CCSGG 2 cut(s) 505, 623
BsaAI YACGTR 1 cut(s) 216
BsaBI GATNNNNATC 2 cut(s) 499, 993
BsaI GGTCTC 1 cut(s) 729
BsaJI CCNNGG 4 cut(s) 51, 504, 586, 660
BsaWI WCCGGW 1 cut(s) 950
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 750, 770
Bse118I RCCGGY 2 cut(s) 32, 69
Bse1I ACTGG 2 cut(s) 421, 925
Bse8I GATNNNNATC 2 cut(s) 499, 993
BseBI CCWGG 2 cut(s) 47, 760
BseDI CCNNGG 4 cut(s) 51, 504, 586, 660
BseGI GGATG 4 cut(s) 256, 651, 994, 1114
BseJI GATNNNNATC 2 cut(s) 499, 993
BseLI CCNNNNNNNGG 3 cut(s) 52, 750, 770
BseMII CTCAG 2 cut(s) 79, 318
BseNI ACTGG 2 cut(s) 421, 925
BseRI GAGGAG 4 cut(s) 374, 392, 395, 398
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 1 cut(s) 891
BsgI GTGCAG 1 cut(s) 931
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 8 cut(s) 32, 36, 45, 50, 659, 763, 774, 812
BshNI GGYRCC 1 cut(s) 824
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 183
BslFI GGGAC 3 cut(s) 195, 264, 1086
BslI CCNNNNNNNGG 3 cut(s) 52, 750, 770
BsmAI GTCTC 3 cut(s) 68, 152, 729
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 195, 264, 1086
BsnI GGCC 8 cut(s) 32, 36, 45, 50, 659, 763, 774, 812
Bso31I GGTCTC 1 cut(s) 729
Bsp119I TTCGAA 1 cut(s) 616
Bsp120I GGGCCC 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 183, 776
Bsp143I GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
Bsp1720I GCTNAGC 1 cut(s) 716
Bsp19I CCATGG 1 cut(s) 586
BspACI CCGC 2 cut(s) 11, 867
BspANI GGCC 8 cut(s) 32, 36, 45, 50, 659, 763, 774, 812
BspCNI CTCAG 2 cut(s) 78, 319
BspLI GGNNCC 3 cut(s) 31, 774, 826
BspPI GGATC 2 cut(s) 582, 1105
BspT104I TTCGAA 1 cut(s) 616
BspT107I GGYRCC 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 729
BsrFI RCCGGY 2 cut(s) 32, 69
BsrI ACTGG 2 cut(s) 421, 925
BssAI RCCGGY 2 cut(s) 32, 69
BssECI CCNNGG 4 cut(s) 51, 504, 586, 660
BssMI GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
BssT1I CCWWGG 2 cut(s) 586, 660
Bst2UI CCWGG 2 cut(s) 47, 760
Bst4CI ACNGT 3 cut(s) 110, 146, 234
Bst6I CTCTTC 1 cut(s) 1078
BstBAI YACGTR 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 4 cut(s) 34, 58, 71, 722
BstDEI CTNAG 3 cut(s) 65, 327, 716
BstDSI CCRYGG 2 cut(s) 51, 586
BstF5I GGATG 4 cut(s) 256, 651, 994, 1114
BstKTI GATC 7 cut(s) 276, 319, 577, 792, 840, 965, 1100
BstMAI GTCTC 3 cut(s) 68, 152, 729
BstMBI GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 42, 66, 721
BstNI CCWGG 2 cut(s) 47, 760
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 4 cut(s) 45, 503, 621, 758
BstSFI CTRYAG 1 cut(s) 829
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 1 cut(s) 891
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 574, 1097
BstXI CCANNNNNNTGG 1 cut(s) 1041
BstYI RGATCY 2 cut(s) 574, 1097
BsuI GTATCC 1 cut(s) 816
BsuRI GGCC 8 cut(s) 32, 36, 45, 50, 659, 763, 774, 812
BtgI CCRYGG 2 cut(s) 51, 586
BtsCI GGATG 4 cut(s) 256, 651, 994, 1114
Cac8I GCNNGC 4 cut(s) 34, 58, 71, 722
Cfr10I RCCGGY 2 cut(s) 32, 69
Cfr13I GGNCC 4 cut(s) 30, 35, 772, 773
Csp6I GTAC 5 cut(s) 133, 235, 244, 286, 796
CviAII CATG 4 cut(s) 190, 283, 559, 587
CviQI GTAC 5 cut(s) 133, 235, 244, 286, 796
DdeI CTNAG 3 cut(s) 65, 327, 716
DpnI GATC 7 cut(s) 275, 318, 576, 791, 839, 964, 1099
DpnII GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
EaeI YGGCCR 2 cut(s) 48, 810
Eam1104I CTCTTC 1 cut(s) 1078
EarI CTCTTC 1 cut(s) 1078
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 586, 660
Eco24I GRGCYC 2 cut(s) 183, 776
Eco31I GGTCTC 1 cut(s) 729
Eco32I GATATC 2 cut(s) 677, 1132
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 772, 773
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 45, 758
EcoRV GATATC 2 cut(s) 677, 1132
EcoT14I CCWWGG 2 cut(s) 586, 660
EcoT38I GRGCYC 2 cut(s) 183, 776
ErhI CCWWGG 2 cut(s) 586, 660
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 4 cut(s) 193, 286, 562, 590
FaqI GGGAC 3 cut(s) 195, 264, 1086
FatI CATG 4 cut(s) 189, 282, 558, 586
FauI CCCGC 1 cut(s) 874
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 880
FokI GGATG 4 cut(s) 263, 658, 1001, 1121
FriOI GRGCYC 2 cut(s) 183, 776
FseI GGCCGGCC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 880
FspBI CTAG 1 cut(s) 1101
GluI GCNGC 1 cut(s) 880
HaeIII GGCC 8 cut(s) 32, 36, 45, 50, 659, 763, 774, 812
Hin1II CATG 4 cut(s) 193, 286, 562, 590
HinfI GANTC 7 cut(s) 323, 495, 698, 853, 932, 954, 1015
HphI GGTGA 4 cut(s) 28, 149, 386, 431
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 4 cut(s) 165, 328, 858, 887
Hpy188III TCNNGA 6 cut(s) 95, 271, 320, 517, 958, 1080
Hpy8I GTNNAC 1 cut(s) 652
HpyAV CCTTC 5 cut(s) 164, 170, 390, 446, 1048
HpyCH4III ACNGT 3 cut(s) 110, 146, 234
HpyCH4IV ACGT 2 cut(s) 215, 258
HpyCH4V TGCA 4 cut(s) 263, 308, 593, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 66, 721
HpyF3I CTNAG 3 cut(s) 65, 327, 716
HpySE526I ACGT 2 cut(s) 215, 258
Hsp92II CATG 4 cut(s) 193, 286, 562, 590
KroI GCCGGC 2 cut(s) 32, 69
KroNI GCCGGC 2 cut(s) 34, 71
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 1 cut(s) 891
LweI GCATC 2 cut(s) 891, 1099
MaeI CTAG 1 cut(s) 1101
MaeII ACGT 2 cut(s) 215, 258
MalI GATC 7 cut(s) 275, 318, 576, 791, 839, 964, 1099
MboI GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
MboII GAAGA 6 cut(s) 139, 355, 473, 799, 1019, 1095
MflI RGATCY 2 cut(s) 574, 1097
MhlI GDGCHC 2 cut(s) 183, 776
MluCI AATT 3 cut(s) 170, 550, 564
MlyI GAGTC 1 cut(s) 941
MroNI GCCGGC 2 cut(s) 32, 69
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 2 cut(s) 686, 906
MspR9I CCNGG 4 cut(s) 47, 505, 623, 760
MvaI CCWGG 2 cut(s) 47, 760
MwoI GCNNNNNNNGC 3 cut(s) 42, 66, 721
NaeI GCCGGC 2 cut(s) 34, 71
NciI CCSGG 2 cut(s) 505, 623
NcoI CCATGG 1 cut(s) 586
NdeI CATATG 1 cut(s) 436
NdeII GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
NgoMIV GCCGGC 2 cut(s) 32, 69
NlaIII CATG 4 cut(s) 193, 286, 562, 590
NlaIV GGNNCC 3 cut(s) 31, 774, 826
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 1 cut(s) 616
PciI ACATGT 1 cut(s) 189
PdiI GCCGGC 2 cut(s) 34, 71
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 6 cut(s) 323, 495, 698, 853, 954, 1015
PkrI GCNGC 1 cut(s) 881
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
Ppu21I YACGTR 1 cut(s) 216
PscI ACATGT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 45, 758
PspGI CCWGG 2 cut(s) 45, 758
PspN4I GGNNCC 3 cut(s) 31, 774, 826
PspOMI GGGCCC 1 cut(s) 772
PspPI GGNCC 4 cut(s) 30, 35, 772, 773
PsuI RGATCY 2 cut(s) 574, 1097
RigI GGCCGGCC 1 cut(s) 36
RsaI GTAC 5 cut(s) 134, 236, 245, 287, 797
RsaNI GTAC 5 cut(s) 133, 235, 244, 286, 796
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 686, 906
SatI GCNGC 1 cut(s) 880
Sau3AI GATC 7 cut(s) 273, 316, 574, 789, 837, 962, 1097
Sau96I GGNCC 4 cut(s) 30, 35, 772, 773
ScaI AGTACT 2 cut(s) 134, 245
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 4 cut(s) 47, 505, 623, 760
SduI GDGCHC 2 cut(s) 183, 776
SfaNI GCATC 2 cut(s) 891, 1099
SfcI CTRYAG 1 cut(s) 829
SfiI GGCCNNNNNGGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 980
SmoI CTYRAG 1 cut(s) 980
Sse9I AATT 3 cut(s) 170, 550, 564
SsiI CCGC 2 cut(s) 11, 867
SspMI CTAG 1 cut(s) 1101
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 4 cut(s) 45, 503, 621, 758
StyI CCWWGG 2 cut(s) 586, 660
TaaI ACNGT 3 cut(s) 110, 146, 234
TaiI ACGT 2 cut(s) 218, 261
TaqI TCGA 4 cut(s) 75, 300, 488, 616
TasI AATT 3 cut(s) 170, 550, 564
TatI WGTACW 3 cut(s) 132, 234, 243
TfiI GAWTC 6 cut(s) 323, 495, 698, 853, 954, 1015
Tru1I TTAA 2 cut(s) 686, 906
Tru9I TTAA 2 cut(s) 686, 906
TseI GCWGC 1 cut(s) 879
TspDTI ATGAA 4 cut(s) 365, 617, 672, 800
TspGWI ACGGA 1 cut(s) 1110
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 1101
ZrmI AGTACT 2 cut(s) 134, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.