Rorug07G0130700

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001076
Physical Location & Seq
Reverse (-)
10323389 .. 10325312
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0130700.1

Sequence Viewer

Length: 894 bp
ATGATAGTAACATCTTCTTCCTCCCTTGCAAACCCTCCTCATCTTCCTCTTCCAACTCCATCAACAACCTCCAAAAACCCTAACAATGCATTCCTACCCATCAGCCGCCGCAACCTCCTTGCTGCCCTCACCCTCACCGCAGCCCCTTTTGCCCTCGACCCCATGTCCGTACAAGAGATAGCTTTTGCTCGTGGCCTCTTCCAGATGCCCCCAGTTAGACTCAGCAACAGGTATTTTCTGGTGAGGGCTGGGGAGTCTGAATATGAGAGCTGGGGGGTGATTAACACGAACCCAGTTGCGAAAACTTCTGTTGATAGCGGGTTGTCAGAGAGAGGGAAGAAGCAGGCGGTGAGGGCAGCTTTCGACTTGAAGGAAATGGGGGCTTGTGACACAAGCTGTTGGATTTGGCCTTCTATCACTCAGAGAGCTTACCAGACCGCAGAGATCATTGCATCGGTTAACGGGGTCACTCGAAGTAACATTGTCCCAGAGTATAGCTTTCTAGATGCCCGTGGCTTAGGAGCTTATGAAGGAAAGAACCTAGAAGCTGTTTCAGAAGTATATGCATCTGATACTATTTCTCCAAGAATCAAGCCTCCTCCAATTGATGATGGAACCCCGAATGAGAGTGTCTCCGATGTGTTTGTTCGGGTGGTACAGCTCATGTCCATACTCGAGACTCAATACTCTGAAGACACAGTAATAATTGTCTCGCCAGATTCAGACAATTTAACAATCCTACAAGCTGGTATAGTTGGACTTGACTTGCGAAGGCACAGAGAACTTTCTTTTGCACCAGGAGAAGTCAGATTTGTTGATACCAATAGTGTACCTACTTACAAGCAACCTGCATCAGCTATATATAAGTGTTTGAATCCACCAAATTGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

297

Amino Acids

32.37

Weight (kDa)

5.36

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 79 - 272 2e-16 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 856
AciI CCGC 6 cut(s) 106, 109, 138, 318, 347, 438
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 4 cut(s) 171, 657, 831, 889
AgsI TTSAA 2 cut(s) 370, 874
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 796
Alw26I GTCTC 3 cut(s) 637, 671, 715
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 2 cut(s) 193, 407
ApeKI GCWGC 3 cut(s) 122, 140, 356
AsuHPI GGTGA 5 cut(s) 121, 127, 253, 289, 361
AvaI CYCGRG 1 cut(s) 674
BauI CACGAG 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 109, 152, 368
BccI CCATC 3 cut(s) 67, 107, 605
BciT130I CCWGG 1 cut(s) 798
BcoDI GTCTC 3 cut(s) 637, 671, 715
BfaI CTAG 2 cut(s) 503, 542
BfuAI ACCTGC 1 cut(s) 856
BisI GCNGC 5 cut(s) 106, 109, 123, 141, 357
BlsI GCNGC 5 cut(s) 107, 110, 124, 142, 358
Bme1390I CCNGG 1 cut(s) 798
BmeRI GACNNNNNGTC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 674
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 1 cut(s) 798
BmrI ACTGGG 2 cut(s) 206, 287
BmsI GCATC 5 cut(s) 195, 461, 496, 575, 860
BmuI ACTGGG 2 cut(s) 206, 287
BpiI GAAGAC 1 cut(s) 699
BplI GAGNNNNNCTC 2 cut(s) 617, 649
Bpu10I CCTNAGC 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 511
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bse1I ACTGG 2 cut(s) 212, 293
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 511
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 2 cut(s) 235, 434
BseNI ACTGG 2 cut(s) 212, 293
BseRI GAGGAG 2 cut(s) 27, 588
BseXI GCAGC 3 cut(s) 109, 152, 368
BseYI CCCAGC 2 cut(s) 248, 270
BshFI GGCC 2 cut(s) 195, 409
BsiHKCI CYCGRG 1 cut(s) 674
BslFI GGGAC 1 cut(s) 470
BsmAI GTCTC 3 cut(s) 637, 671, 715
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 2 cut(s) 195, 409
BsoBI CYCGRG 1 cut(s) 674
Bsp143I GATC 1 cut(s) 444
BspACI CCGC 6 cut(s) 106, 109, 138, 318, 347, 438
BspANI GGCC 2 cut(s) 195, 409
BspCNI CTCAG 2 cut(s) 234, 433
BspLI GGNNCC 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 2 cut(s) 212, 293
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 1 cut(s) 444
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 2 cut(s) 54, 203
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 3 cut(s) 221, 420, 517
BstDSI CCRYGG 1 cut(s) 511
BstKTI GATC 1 cut(s) 447
BstMAI GTCTC 3 cut(s) 637, 671, 715
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 2 cut(s) 149, 353
BstNI CCWGG 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 796
BstV1I GCAGC 3 cut(s) 109, 152, 368
BstV2I GAAGAC 1 cut(s) 699
BsuRI GGCC 2 cut(s) 195, 409
BtgI CCRYGG 1 cut(s) 511
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 1 cut(s) 345
Csp6I GTAC 4 cut(s) 170, 656, 830, 888
CviAII CATG 2 cut(s) 163, 664
CviQI GTAC 4 cut(s) 170, 656, 830, 888
DdeI CTNAG 3 cut(s) 221, 420, 517
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
DriI GACNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 54, 203
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 2 cut(s) 54, 203
Eco57I CTGAAG 1 cut(s) 711
Eco88I CYCGRG 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 796
EcoT22I ATGCAT 2 cut(s) 91, 568
FaeI CATG 2 cut(s) 166, 667
FaqI GGGAC 1 cut(s) 470
FatI CATG 2 cut(s) 162, 663
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 5 cut(s) 106, 109, 123, 141, 357
Fsp4HI GCNGC 5 cut(s) 106, 109, 123, 141, 357
FspBI CTAG 2 cut(s) 503, 542
GluI GCNGC 5 cut(s) 106, 109, 123, 141, 357
GsaI CCCAGC 2 cut(s) 252, 274
HaeIII GGCC 2 cut(s) 195, 409
Hin1II CATG 2 cut(s) 166, 667
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 6 cut(s) 219, 254, 588, 679, 719, 874
HpaI GTTAAC 1 cut(s) 460
HphI GGTGA 5 cut(s) 121, 127, 253, 289, 361
Hpy166II GTNNAC 2 cut(s) 460, 830
Hpy188I TCNGA 9 cut(s) 259, 328, 423, 556, 571, 637, 691, 724, 809
Hpy188III TCNNGA 3 cut(s) 202, 503, 676
Hpy8I GTNNAC 2 cut(s) 460, 830
HpyAV CCTTC 4 cut(s) 364, 420, 524, 765
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4V TGCA 6 cut(s) 29, 89, 452, 566, 794, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 353
HpyF3I CTNAG 3 cut(s) 221, 420, 517
Hsp92II CATG 2 cut(s) 166, 667
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 3 cut(s) 109, 152, 368
LweI GCATC 5 cut(s) 195, 461, 496, 575, 860
MaeI CTAG 2 cut(s) 503, 542
MaeIII GTNAC 4 cut(s) 7, 386, 466, 476
MalI GATC 1 cut(s) 446
MboI GATC 1 cut(s) 444
MboII GAAGA 7 cut(s) 6, 9, 35, 41, 190, 349, 704
MfeI CAATTG 1 cut(s) 603
MluCI AATT 4 cut(s) 603, 705, 727, 883
MlyI GAGTC 3 cut(s) 213, 263, 673
MmeI TCCRAC 3 cut(s) 77, 380, 736
Mph1103I ATGCAT 2 cut(s) 91, 568
MseI TTAA 3 cut(s) 282, 459, 731
MspR9I CCNGG 1 cut(s) 798
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 149, 353
NdeII GATC 1 cut(s) 444
NlaIII CATG 2 cut(s) 166, 667
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 2 cut(s) 386, 466
NsiI ATGCAT 2 cut(s) 91, 568
PaeR7I CTCGAG 1 cut(s) 674
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 588, 719, 874
PkrI GCNGC 5 cut(s) 107, 110, 124, 142, 358
PleI GAGTC 3 cut(s) 213, 262, 673
PpsI GAGTC 3 cut(s) 213, 262, 673
Psp6I CCWGG 1 cut(s) 796
PspFI CCCAGC 2 cut(s) 248, 270
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 1 cut(s) 616
RsaI GTAC 4 cut(s) 171, 657, 831, 889
RsaNI GTAC 4 cut(s) 170, 656, 830, 888
SaqAI TTAA 3 cut(s) 282, 459, 731
SatI GCNGC 5 cut(s) 106, 109, 123, 141, 357
Sau3AI GATC 1 cut(s) 444
SchI GAGTC 3 cut(s) 213, 263, 673
ScrFI CCNGG 1 cut(s) 798
SfaNI GCATC 5 cut(s) 195, 461, 496, 575, 860
Sfr274I CTCGAG 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 4 cut(s) 603, 705, 727, 883
SsiI CCGC 6 cut(s) 106, 109, 138, 318, 347, 438
SspMI CTAG 2 cut(s) 503, 542
StyD4I CCNGG 1 cut(s) 796
TaaI ACNGT 1 cut(s) 700
TaqI TCGA 4 cut(s) 156, 363, 472, 675
TasI AATT 4 cut(s) 603, 705, 727, 883
TauI GCSGC 2 cut(s) 108, 111
TfiI GAWTC 3 cut(s) 588, 719, 874
Tru1I TTAA 3 cut(s) 282, 459, 731
Tru9I TTAA 3 cut(s) 282, 459, 731
TseFI GTSAC 2 cut(s) 386, 466
TseI GCWGC 3 cut(s) 122, 140, 356
Tsp45I GTSAC 2 cut(s) 386, 466
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 1 cut(s) 157
XbaI TCTAGA 1 cut(s) 502
XhoI CTCGAG 1 cut(s) 674
XspI CTAG 2 cut(s) 503, 542
Zsp2I ATGCAT 2 cut(s) 91, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.