Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001076

Physical Location & Seq

Genomic Coordinates Reverse (-)

41410753 .. 41413355

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG215100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGCTTTCCAATTTCAATCAATTTTTGAAGAAAGCTCAGAAGCTACAAGCTACAACTTCGAGAACAGTGAACGATCGGTTTATCTATCTGAGGATCGGAGGGTGCAGTAAATCGAGGTTGGCTCTGGGAATTCTGGCAAACGATGGTGCAATATTGTTCAAAGCCCGCAAAGTGGATTCTTTGATGGTTTTGCTTAGCAATCTGGTTTATGGAGACCTGACCCAAGTACGGGATAGCCAGGCCAAAAGAGGGCCCTCCCTTTATCAAGATCAAGTTTTACCCGCAGAAATAGGCAGCATAAGAGGAAGCGATGTGGAACTCAAAAAGGGGAAGTCATACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGACATCAACAAGTTTGTGGCTCAAGATGATTATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

138

Amino Acids

15.45

Weight (kDa)

9.8

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001076)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24750 FvH4_2g24750
malus_domestica	MD00G1056000.v1.1
prunus_persica	Prupe.8G252500_v2.0.a1 Prupe.8G252500_v2.0.a1
pyrus_communis	pycom03g21970 pycom03g21980
rosa_chinensis	RchiOBHm_Chr2g0097031 RchiOBHm_Chr4g0418611 RchiOBHm_Chr5g0016501 RchiOBHm_Chr6g0271581 RchiOBHm_Chr6g0271731 RchiOBHm_Chr6g0271741 RchiOBHm_Chr6g0283091 RchiOBHm_Chr6g0292571
rosa_laevigata	RLG00000001339 RLG00000007851 RLG00000012008 RLG00000013718 RLG00000013733 RLG00000017406
rosa_multiflora	Rmu_co8394867.1_g000001 Rmu_sc0000239.1_g000054 Rmu_sc0000515.1_g000003
rosa_roxburghii	Rroxscaffold_173G00435070 Rroxscaffold_1G00056640 Rroxscaffold_6G00413030 Rroxscaffold_6G00413040 Rroxscaffold_7G00174920 Rroxscaffold_7G00196640
rosa_rugosa	Rorug06G0062000 Rorug06G0228200 Rorug07G0130700
rosa_samantha	Rh2AG005700 Rh2AG179700 Rh2AG504500 Rh2BG188500 Rh2CG490400 Rh2DG113900 Rh2DG185500 Rh4CG227800 Rh4DG215100 Rh5CG138200 Rh6AG180900 Rh6AG341300 Rh6BG186500 Rh6BG186600 Rh6BG348700 Rh6CG180600 Rh6CG355600 Rh6DG172400 Rh6DG172900 Rh6DG259400 Rh6DG341400
rosa_wichuraiana	Rw0G015050 Rw2G014040 Rw4G018380 Rw6G006990 Rw6G015520 Rw6G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	169, 285
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	4 cut(s)	175, 231, 232, 252
AgsI	TTSAA	4 cut(s)	19, 31, 163, 376
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	7, 38, 46, 53
AluI	AGCT	4 cut(s)	7, 38, 46, 53
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	243, 254
ApaI	GGGCCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	297
ApoI	RAATTY	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	254, 255
BaeGI	GKGCMC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	140, 181, 362
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	298
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	254, 255
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
Bpu1102I	GCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 231, 232, 252
Bse1I	ACTGG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	242
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	4 cut(s)	175, 231, 232, 252
BseMII	CTCAG	2 cut(s)	53, 83
BseNI	ACTGG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	309
BsgI	GTGCAG	2 cut(s)	127, 349
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	245, 256
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	369
BslI	CCNNNNNNNGG	4 cut(s)	175, 231, 232, 252
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	245, 256
Bso31I	GGTCTC	1 cut(s)	210
Bsp120I	GGGCCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	76, 96, 271
Bsp1720I	GCTNAGC	1 cut(s)	197
BspACI	CCGC	2 cut(s)	169, 285
BspANI	GGCC	2 cut(s)	245, 256
BspCNI	CTCAG	2 cut(s)	52, 84
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	3 cut(s)	76, 96, 271
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	39, 92, 197
BstKTI	GATC	3 cut(s)	79, 99, 274
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	76, 96, 271
BstMCI	CGRYCG	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	245, 256
BtgZI	GCGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	254, 255
Csp6I	GTAC	1 cut(s)	230
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	3 cut(s)	39, 92, 197
DpnI	GATC	3 cut(s)	78, 98, 273
DpnII	GATC	3 cut(s)	76, 96, 271
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	210
EcoO109I	RGGNCCY	2 cut(s)	254, 255
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	258
FaiI	YATR	3 cut(s)	213, 302, 340
FauI	CCCGC	2 cut(s)	176, 292
Fnu4HI	GCNGC	1 cut(s)	298
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	245, 256
HapII	CCGG	1 cut(s)	369
HinfI	GANTC	3 cut(s)	179, 350, 372
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	42, 93, 101
Hpy188III	TCNNGA	4 cut(s)	63, 269, 376, 400
Hpy8I	GTNNAC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	108, 152, 366
HpyF3I	CTNAG	3 cut(s)	39, 92, 197
Kzo9I	GATC	3 cut(s)	76, 96, 271
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	113, 122, 191, 227, 233, 254, 356, 382
Lsp1109I	GCAGC	1 cut(s)	309
MalI	GATC	3 cut(s)	78, 98, 273
MboI	GATC	3 cut(s)	76, 96, 271
MboII	GAAGA	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	13, 23, 132
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	87, 95, 111, 245, 268, 299
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	76, 96, 271
NlaIV	GGNNCC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	179, 372
PkrI	GCNGC	1 cut(s)	299
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	256
PspOMI	GGGCCC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	254, 255
PvuI	CGATCG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	3 cut(s)	76, 96, 271
Sau96I	GGNCC	2 cut(s)	254, 255
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	6 cut(s)	9, 40, 48, 55, 122, 222
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	13, 23, 132
SsiI	CCGC	2 cut(s)	169, 285
SspI	AATATT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	62, 116
TasI	AATT	3 cut(s)	13, 23, 132
TfiI	GAWTC	2 cut(s)	179, 372
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	1 cut(s)	297
TspRI	CASTG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.