Rw4G018380

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001076
Physical Location & Seq
Reverse (-)
40854466 .. 40859706
5241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018380.1

Sequence Viewer

Length: 540 bp
ATGGAGCTTTCCAATTTCAATCAATTTTTGAAGAAAGCTCAGAAGCTACAAGCTACAACTTCGAGAACAGTGAACGATCGGTTTATCTATCTGAGGATCGGAGGGTGCAGTAAATCGAGGTTGGCTCTGGGAATTCTGGCAAACGATGGTGCAATATTGTTCAAAGCCCGCAATCTGGTTTATGGAGACCTGACCCAAGTACGGGATAGCCAGGCCAAAAGAGGGCCCACCCTTTATCAAGATCAAGTACGACAAGTATCCGACGAGATTCAGGTTTTACCCGCAGAAATAGGCAGCATAAGAGGAAGCGATGTGGAACTCAAAAAGGGGGAGTCATACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGACATCAACAAGTTTGTGGCTCAAGGCAGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACCAAGTTCTCCAAACCATTCGAAGGGACAGAAGGGTGCCTCTGGGTGTACAGAAGAGTTTGCCTCTGTGGATTTATTCTCTGCTCTCATCATCATAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

179

Amino Acids

19.79

Weight (kDa)

8.74

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 473
AciI CCGC 2 cut(s) 169, 282
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 132
AfaI GTAC 3 cut(s) 201, 249, 487
AfiI CCNNNNNNNGG 5 cut(s) 175, 201, 202, 222, 460
AgsI TTSAA 5 cut(s) 19, 31, 163, 373, 418
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AluBI AGCT 4 cut(s) 7, 38, 46, 53
AluI AGCT 4 cut(s) 7, 38, 46, 53
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 104
AoxI GGCC 2 cut(s) 213, 224
ApaI GGGCCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 224, 225
AsuII TTCGAA 1 cut(s) 458
BaeGI GKGCMC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 306
BccI CCATC 3 cut(s) 140, 359, 419
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 180
BfuI GTATCC 1 cut(s) 268
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 224, 225
BmiI GGNNCC 2 cut(s) 226, 475
BmrFI CCNGG 1 cut(s) 212
BplI GAGNNNNNCTC 4 cut(s) 109, 141, 485, 517
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 201, 202, 222, 460
Bse1I ACTGG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 1 cut(s) 212
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 5 cut(s) 175, 201, 202, 222, 460
BseMII CTCAG 2 cut(s) 53, 83
BseNI ACTGG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 306
BsgI GTGCAG 2 cut(s) 127, 346
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 2 cut(s) 215, 226
BshNI GGYRCC 1 cut(s) 473
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 5 cut(s) 175, 201, 202, 222, 460
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 2 cut(s) 215, 226
Bso31I GGTCTC 1 cut(s) 180
Bsp119I TTCGAA 1 cut(s) 458
Bsp120I GGGCCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 485
Bsp143I GATC 3 cut(s) 76, 96, 241
BspACI CCGC 2 cut(s) 169, 282
BspANI GGCC 2 cut(s) 215, 226
BspCNI CTCAG 2 cut(s) 52, 84
BspLI GGNNCC 2 cut(s) 226, 475
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 485
BsrI ACTGG 1 cut(s) 340
BssMI GATC 3 cut(s) 76, 96, 241
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 486
BstAUI TGTACA 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 39, 92
BstKTI GATC 3 cut(s) 79, 99, 244
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 76, 96, 241
BstMCI CGRYCG 1 cut(s) 79
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 306
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 215, 226
BtgZI GCGATG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 224, 225
Csp6I GTAC 3 cut(s) 200, 248, 486
CviQI GTAC 3 cut(s) 200, 248, 486
DdeI CTNAG 2 cut(s) 39, 92
DpnI GATC 3 cut(s) 78, 98, 243
DpnII GATC 3 cut(s) 76, 96, 241
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 228
FaiI YATR 4 cut(s) 183, 299, 337, 533
FaqI GGGAC 1 cut(s) 477
FauI CCCGC 2 cut(s) 176, 289
Fnu4HI GCNGC 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 295
HaeIII GGCC 2 cut(s) 215, 226
HapII CCGG 1 cut(s) 366
HinfI GANTC 5 cut(s) 268, 332, 347, 369, 430
HpaII CCGG 1 cut(s) 366
Hpy166II GTNNAC 2 cut(s) 73, 486
Hpy188I TCNGA 4 cut(s) 42, 93, 101, 262
Hpy188III TCNNGA 3 cut(s) 63, 239, 373
Hpy8I GTNNAC 2 cut(s) 73, 486
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 454, 463
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 108, 152, 363
HpyF3I CTNAG 2 cut(s) 39, 92
Kzo9I GATC 3 cut(s) 76, 96, 241
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 306
MalI GATC 3 cut(s) 78, 98, 243
MboI GATC 3 cut(s) 76, 96, 241
MboII GAAGA 3 cut(s) 43, 434, 503
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 3 cut(s) 13, 23, 132
MlyI GAGTC 2 cut(s) 341, 356
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 7 cut(s) 87, 95, 111, 215, 296, 487, 511
MseI TTAA 1 cut(s) 538
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NdeII GATC 3 cut(s) 76, 96, 241
NlaIV GGNNCC 2 cut(s) 226, 475
NspV TTCGAA 1 cut(s) 458
PfeI GAWTC 3 cut(s) 268, 369, 430
PkrI GCNGC 1 cut(s) 296
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 2 cut(s) 340, 355
PpsI GAGTC 2 cut(s) 340, 355
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 226, 475
PspOMI GGGCCC 1 cut(s) 224
PspPI GGNCC 2 cut(s) 224, 225
PvuI CGATCG 1 cut(s) 79
RsaI GTAC 3 cut(s) 201, 249, 487
RsaNI GTAC 3 cut(s) 200, 248, 486
SaqAI TTAA 1 cut(s) 538
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 3 cut(s) 76, 96, 241
Sau96I GGNCC 2 cut(s) 224, 225
SchI GAGTC 2 cut(s) 341, 356
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 228
SetI ASST 7 cut(s) 9, 40, 48, 55, 122, 192, 276
SfuI TTCGAA 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 3 cut(s) 13, 23, 132
SsiI CCGC 2 cut(s) 169, 282
SspI AATATT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 62, 116, 458
TasI AATT 3 cut(s) 13, 23, 132
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 3 cut(s) 268, 369, 430
Tru1I TTAA 1 cut(s) 538
Tru9I TTAA 1 cut(s) 538
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 294
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.