Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001076

Physical Location & Seq

Genomic Coordinates Reverse (-)

16557754 .. 16560088

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG185500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCTACTTCCTCGGGTCCCCCATCTTCTGCAAAAGGGTTTATTGTAGAGATGGATTCGTTTTCGCTGCCAAGGAAGTTTCATTGCTTGATCAAGGAAGTCAGGGGAGGAGTTGTGTTCCCCAAACAGGTTCATTTTTTGTCAAGAAAGATGTACGGGATAGCCAGGCCAAAAGAGGGCCCTTTCTTTATGAAGATCAAGTACGACAAGTATCCGGCCATTGATGTCGGCGCCTGTAGTAAGATCAAGTCCGACGAGATTCAGGTTTTACCTGCAGAAATAGGCAGCATAAGAGGAAGCCATGTGGAACTCAAAAGGGGGAAGTCATACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGACATCAACAAGTTTGTGGCTCAAGGCAGATGATTATCTTTTGAAGGAAGATGGGATTCCAAGACCAAGTTCTCCAAACCATTCGAAGGGACAGAAGGTTTGGAGCCAAAATTTGGTTAATCACCTCTCTTCGGGATACTTGCTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

9.58

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001076)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24750 FvH4_2g24750
malus_domestica	MD00G1056000.v1.1
prunus_persica	Prupe.8G252500_v2.0.a1 Prupe.8G252500_v2.0.a1
pyrus_communis	pycom03g21970 pycom03g21980
rosa_chinensis	RchiOBHm_Chr2g0097031 RchiOBHm_Chr4g0418611 RchiOBHm_Chr5g0016501 RchiOBHm_Chr6g0271581 RchiOBHm_Chr6g0271731 RchiOBHm_Chr6g0271741 RchiOBHm_Chr6g0283091 RchiOBHm_Chr6g0292571
rosa_laevigata	RLG00000001339 RLG00000007851 RLG00000012008 RLG00000013718 RLG00000013733 RLG00000017406
rosa_multiflora	Rmu_co8394867.1_g000001 Rmu_sc0000239.1_g000054 Rmu_sc0000515.1_g000003
rosa_roxburghii	Rroxscaffold_173G00435070 Rroxscaffold_1G00056640 Rroxscaffold_6G00413030 Rroxscaffold_6G00413040 Rroxscaffold_7G00174920 Rroxscaffold_7G00196640
rosa_rugosa	Rorug06G0062000 Rorug06G0228200 Rorug07G0130700
rosa_samantha	Rh2AG005700 Rh2AG179700 Rh2AG504500 Rh2BG188500 Rh2CG490400 Rh2DG113900 Rh2DG185500 Rh4CG227800 Rh4DG215100 Rh5CG138200 Rh6AG180900 Rh6AG341300 Rh6BG186500 Rh6BG186600 Rh6BG348700 Rh6CG180600 Rh6CG355600 Rh6DG172400 Rh6DG172900 Rh6DG259400 Rh6DG341400
rosa_wichuraiana	Rw0G015050 Rw2G014040 Rw4G018380 Rw6G006990 Rw6G015520 Rw6G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	2 cut(s)	155, 203
AfiI	CCNNNNNNNGG	5 cut(s)	127, 176, 451, 478, 496
AgsI	TTSAA	2 cut(s)	364, 409
AjnI	CCWGG	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	3 cut(s)	167, 178, 216
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	67, 285
ApoI	RAATTY	1 cut(s)	475
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	17, 178, 179
AsuHPI	GGTGA	1 cut(s)	479
AsuII	TTCGAA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbvI	GCAGC	2 cut(s)	54, 297
BccI	CCATC	4 cut(s)	31, 46, 350, 410
BciT130I	CCWGG	1 cut(s)	166
BciVI	GTATCC	2 cut(s)	222, 494
BclI	TGATCA	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	235, 273
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	280
BfuI	GTATCC	2 cut(s)	222, 494
BisI	GCNGC	2 cut(s)	68, 286
BlsI	GCNGC	2 cut(s)	69, 287
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	17, 178, 179
BmiI	GGNNCC	5 cut(s)	18, 19, 180, 232, 470
BmrFI	CCNGG	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	12, 71
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 176, 451, 478, 496
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	12, 71
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	5 cut(s)	127, 176, 451, 478, 496
BseMI	GCAATG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	54, 297
BsgI	GTGCAG	1 cut(s)	337
BshFI	GGCC	3 cut(s)	169, 180, 218
BshNI	GGYRCC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	215, 357
BslFI	GGGAC	2 cut(s)	3, 468
BslI	CCNNNNNNNGG	5 cut(s)	127, 176, 451, 478, 496
BsmFI	GGGAC	2 cut(s)	3, 468
BsnI	GGCC	3 cut(s)	169, 180, 218
BsoBI	CYCGRG	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	449
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	90, 195, 243
BspANI	GGCC	3 cut(s)	169, 180, 218
BspLI	GGNNCC	5 cut(s)	18, 19, 180, 232, 470
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	12, 71
BssMI	GATC	3 cut(s)	90, 195, 243
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	93, 198, 246
BstMBI	GATC	3 cut(s)	90, 195, 243
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	235, 273
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	54, 297
BsuI	GTATCC	2 cut(s)	222, 494
BsuRI	GGCC	3 cut(s)	169, 180, 218
BveI	ACCTGC	1 cut(s)	280
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	17, 178, 179
Csp6I	GTAC	2 cut(s)	154, 202
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	7 cut(s)	164, 169, 180, 218, 300, 385, 471
CviKI_1	RGCY	7 cut(s)	164, 169, 180, 218, 300, 385, 471
CviQI	GTAC	2 cut(s)	154, 202
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	3 cut(s)	92, 197, 245
DpnII	GATC	3 cut(s)	90, 195, 243
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	13
EcoO109I	RGGNCCY	3 cut(s)	17, 178, 179
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	182
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	305
FaiI	YATR	4 cut(s)	191, 290, 303, 328
FaqI	GGGAC	2 cut(s)	3, 468
FatI	CATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	68, 286
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	68, 286
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	68, 286
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	169, 180, 218
HapII	CCGG	2 cut(s)	215, 357
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	5 cut(s)	56, 259, 338, 360, 421
HpaII	CCGG	2 cut(s)	215, 357
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	144, 364, 498
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	403, 445, 454
HpyCH4V	TGCA	3 cut(s)	32, 275, 354
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 195, 243
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	2 cut(s)	54, 297
MalI	GATC	3 cut(s)	92, 197, 245
MboI	GATC	3 cut(s)	90, 195, 243
MboII	GAAGA	4 cut(s)	18, 205, 425, 486
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	475
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	22, 101, 169, 287, 500
MseI	TTAA	1 cut(s)	483
MspI	CCGG	2 cut(s)	215, 357
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	3 cut(s)	90, 195, 243
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	5 cut(s)	18, 19, 180, 232, 470
NspV	TTCGAA	1 cut(s)	449
PfeI	GAWTC	4 cut(s)	56, 259, 360, 421
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	69, 287
PleI	GAGTC	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	5 cut(s)	18, 19, 180, 232, 470
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	17, 178, 179
PspPPI	RGGWCCY	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	155, 203
RsaNI	GTAC	2 cut(s)	154, 202
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	68, 286
Sau3AI	GATC	3 cut(s)	90, 195, 243
Sau96I	GGNCC	3 cut(s)	17, 178, 179
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	5 cut(s)	132, 267, 274, 465, 492
SfcI	CTRYAG	2 cut(s)	235, 273
SfoI	GGCGCC	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	449
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	1 cut(s)	475
SspDI	GGCGCC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	71
TaqI	TCGA	1 cut(s)	449
TasI	AATT	1 cut(s)	475
TfiI	GAWTC	4 cut(s)	56, 259, 360, 421
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseI	GCWGC	2 cut(s)	67, 285
TspDTI	ATGAA	3 cut(s)	71, 122, 206
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.