Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001076

Physical Location & Seq

Genomic Coordinates Forward (+)

35467499 .. 35477845

Gene Structure 10347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAAATTGCTTTGGATCCGGCAAACGATGGTGCAAAGACTTCAATCACCGTTCAAAGCCCGAAAGAAATTGTTGTGGTTTTCGTCTTGGATGAAGGTACAAAGCCAGCTTGGTCTTCTTTTGGGACTTCGGGGCTACGCCACTTGTACGCCGGCCTCCTAGAACCTTCTTTGCGTATTCAATTGGTTAACCGTTTTGCGCCTATCCCCGGTGATGGTAAATCCGTCTCGCCTTTGTATCGCTTGGGGGATAACCTTGAGTTATCGTATGCCCTTGAAGTGAATTGTAATAATGAACTTGAGTTTCTTCGAGATTTGAAATTTGAGTGGCATGTGTATGGTTATTCCGAGGAAAAAATTCAAGACGTTTCATTGATGTTGAGTTTTAATTCATGTCTCGGGTTTGAAATAGTTATTCAAAATCCGAGGCGTGACATTAGCAAAGTGGATTCTTTGATGGTTTTGCTTAGCAAGCTGGTTTTAGGAGACCGACCCAAGTACGGGATACCCGTGCCAAAAGAGGGCCCTTTCTTTATGAAGATCAATTACAGCAAGTATCCGACCATTGATGTCGGCACTGTAGTAAGATCAAATCCGGCGAGATTCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

203

Amino Acids

22.73

Weight (kDa)

5.76

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001076)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24750 FvH4_2g24750
malus_domestica	MD00G1056000.v1.1
prunus_persica	Prupe.8G252500_v2.0.a1 Prupe.8G252500_v2.0.a1
pyrus_communis	pycom03g21970 pycom03g21980
rosa_chinensis	RchiOBHm_Chr2g0097031 RchiOBHm_Chr4g0418611 RchiOBHm_Chr5g0016501 RchiOBHm_Chr6g0271581 RchiOBHm_Chr6g0271731 RchiOBHm_Chr6g0271741 RchiOBHm_Chr6g0283091 RchiOBHm_Chr6g0292571
rosa_laevigata	RLG00000001339 RLG00000007851 RLG00000012008 RLG00000013718 RLG00000013733 RLG00000017406
rosa_multiflora	Rmu_co8394867.1_g000001 Rmu_sc0000239.1_g000054 Rmu_sc0000515.1_g000003
rosa_roxburghii	Rroxscaffold_173G00435070 Rroxscaffold_1G00056640 Rroxscaffold_6G00413030 Rroxscaffold_6G00413040 Rroxscaffold_7G00174920 Rroxscaffold_7G00196640
rosa_rugosa	Rorug06G0062000 Rorug06G0228200 Rorug07G0130700
rosa_samantha	Rh2AG005700 Rh2AG179700 Rh2AG504500 Rh2BG188500 Rh2CG490400 Rh2DG113900 Rh2DG185500 Rh4CG227800 Rh4DG215100 Rh5CG138200 Rh6AG180900 Rh6AG341300 Rh6BG186500 Rh6BG186600 Rh6BG348700 Rh6CG180600 Rh6CG355600 Rh6DG172400 Rh6DG172900 Rh6DG259400 Rh6DG341400
rosa_wichuraiana	Rw0G015050 Rw2G014040 Rw4G018380 Rw6G006990 Rw6G015520 Rw6G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	11, 24
AcsI	RAATTY	2 cut(s)	320, 357
AfaI	GTAC	3 cut(s)	100, 149, 500
AfiI	CCNNNNNNNGG	5 cut(s)	209, 215, 500, 501, 521
AgsI	TTSAA	8 cut(s)	45, 56, 182, 278, 319, 362, 407, 419
AluBI	AGCT	2 cut(s)	110, 475
AluI	AGCT	2 cut(s)	110, 475
Alw26I	GTCTC	3 cut(s)	232, 401, 480
AlwI	GGATC	2 cut(s)	11, 24
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	154, 523
ApaI	GGGCCC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	320, 357
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	523, 524
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	40, 224
AvaI	CYCGRG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	527
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	527
BarI	GAAGNNNNNNTAC	2 cut(s)	530, 562
BbsI	GAAGAC	1 cut(s)	108
BccI	CCATC	3 cut(s)	23, 209, 451
BciVI	GTATCC	2 cut(s)	498, 567
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	232, 401, 480
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	579
BfuI	GTATCC	2 cut(s)	498, 567
BlpI	GCTNAGC	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	523, 524
BmiI	GGNNCC	2 cut(s)	18, 525
BmrFI	CCNGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	278, 320
BpuMI	CCSGG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	208, 348, 425
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 215, 500, 501, 521
Bse118I	RCCGGY	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	208, 348, 425
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	5 cut(s)	209, 215, 500, 501, 521
BseSI	GKGCMC	1 cut(s)	527
BshFI	GGCC	2 cut(s)	156, 525
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	4 cut(s)	20, 153, 210, 596
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	5 cut(s)	209, 215, 500, 501, 521
BsmAI	GTCTC	3 cut(s)	232, 401, 480
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	156, 525
Bso31I	GGTCTC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	398
Bsp120I	GGGCCC	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	16, 540, 587
Bsp1720I	GCTNAGC	1 cut(s)	467
BspANI	GGCC	2 cut(s)	156, 525
BspLI	GGNNCC	2 cut(s)	18, 525
BspPI	GGATC	2 cut(s)	11, 24
BspTNI	GGTCTC	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	208, 348, 425
BssMI	GATC	3 cut(s)	16, 540, 587
Bst4CI	ACNGT	3 cut(s)	52, 194, 580
BstC8I	GCNNGC	3 cut(s)	108, 154, 473
BstDEI	CTNAG	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	19, 543, 590
BstMAI	GTCTC	3 cut(s)	232, 401, 480
BstMBI	GATC	3 cut(s)	16, 540, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	579
BstSLI	GKGCMC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuI	GTATCC	2 cut(s)	498, 567
BsuRI	GGCC	2 cut(s)	156, 525
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	3 cut(s)	108, 154, 473
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	523, 524
Csp6I	GTAC	3 cut(s)	99, 148, 499
CviAII	CATG	2 cut(s)	332, 393
CviJI	RGCY	7 cut(s)	60, 106, 110, 136, 156, 475, 525
CviKI_1	RGCY	7 cut(s)	60, 106, 110, 136, 156, 475, 525
CviQI	GTAC	3 cut(s)	99, 148, 499
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	3 cut(s)	18, 542, 589
DpnII	GATC	3 cut(s)	16, 540, 587
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	398
EcoO109I	RGGNCCY	2 cut(s)	523, 524
EcoT38I	GRGCYC	1 cut(s)	527
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	335, 396
FaiI	YATR	5 cut(s)	270, 333, 339, 394, 536
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	331, 392
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	527
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	156, 525
HapII	CCGG	4 cut(s)	20, 153, 210, 596
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	2 cut(s)	335, 396
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	449, 603
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	4 cut(s)	20, 153, 210, 596
HphI	GGTGA	2 cut(s)	40, 224
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	349, 426, 561
Hpy188III	TCNNGA	2 cut(s)	311, 362
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	89, 177
HpyCH4III	ACNGT	3 cut(s)	52, 194, 580
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	335, 396
HspAI	GCGC	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	16, 540, 587
LpnPI	CCDG	5 cut(s)	33, 120, 166, 223, 461
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	18, 542, 589
MboI	GATC	3 cut(s)	16, 540, 587
MboII	GAAGA	3 cut(s)	108, 299, 550
MfeI	CAATTG	1 cut(s)	182
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	8 cut(s)	6, 69, 182, 283, 320, 357, 388, 544
MmeI	TCCRAC	1 cut(s)	584
MnlI	CCTC	4 cut(s)	167, 343, 420, 514
MroNI	GCCGGC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	189, 387
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	4 cut(s)	20, 153, 210, 596
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	472
NaeI	GCCGGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	16, 540, 587
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	335, 396
NlaIV	GGNNCC	2 cut(s)	18, 525
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PdiI	GCCGGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	449, 603
PspN4I	GGNNCC	2 cut(s)	18, 525
PspOMI	GGGCCC	1 cut(s)	523
PspPI	GGNCC	2 cut(s)	523, 524
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	3 cut(s)	100, 149, 500
RsaNI	GTAC	3 cut(s)	99, 148, 499
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	189, 387
Sau3AI	GATC	3 cut(s)	16, 540, 587
Sau96I	GGNCC	2 cut(s)	523, 524
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	6 cut(s)	100, 112, 169, 258, 369, 477
SfcI	CTRYAG	1 cut(s)	579
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	257, 299
SmoI	CTYRAG	2 cut(s)	257, 299
Sse9I	AATT	8 cut(s)	6, 69, 182, 283, 320, 357, 388, 544
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	52, 194, 580
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	310
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	8 cut(s)	6, 69, 182, 283, 320, 357, 388, 544
TfiI	GAWTC	2 cut(s)	449, 603
Tru1I	TTAA	2 cut(s)	189, 387
Tru9I	TTAA	2 cut(s)	189, 387
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	5 cut(s)	108, 309, 360, 381, 551
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	583
XapI	RAATTY	2 cut(s)	320, 357
XceI	RCATGY	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.