Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001076

Physical Location & Seq

Genomic Coordinates Reverse (-)

78453867 .. 78455754

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAAATTGCTTTGGATCCGGAAAACGATGGTGCAAAGACTTCAATCACCGTTCAAAGCCCGGTTCATTTTTTGTCAAGAAGGATGGTTTACTTGGCCTTGGTTTTGTTAATATATCTTTCATTTAGCAAAGTGGATTCTTTGATGGTTTTGCTTAGCAAGCTGGTTTATGGAGACCGACCCAAGTACGGGATACCCAGGCCAAAAGAGGGCCCTTTCTTTATGAAGATCAATTACAGCAAGTATCCGACCATTGATGTCGGCACCTGTAGTAAGATCAAGTCCGGCGAGATTCAAGCAGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACCAAGTTCTCCAAACCATTCAAAGGGACAGAAGGATGTTTCCACAAGAAGTCCCGTAAAGAACCATCGGCTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

137

Amino Acids

15.43

Weight (kDa)

9.43

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001076)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24750 FvH4_2g24750
malus_domestica	MD00G1056000.v1.1
prunus_persica	Prupe.8G252500_v2.0.a1 Prupe.8G252500_v2.0.a1
pyrus_communis	pycom03g21970 pycom03g21980
rosa_chinensis	RchiOBHm_Chr2g0097031 RchiOBHm_Chr4g0418611 RchiOBHm_Chr5g0016501 RchiOBHm_Chr6g0271581 RchiOBHm_Chr6g0271731 RchiOBHm_Chr6g0271741 RchiOBHm_Chr6g0283091 RchiOBHm_Chr6g0292571
rosa_laevigata	RLG00000001339 RLG00000007851 RLG00000012008 RLG00000013718 RLG00000013733 RLG00000017406
rosa_multiflora	Rmu_co8394867.1_g000001 Rmu_sc0000239.1_g000054 Rmu_sc0000515.1_g000003
rosa_roxburghii	Rroxscaffold_173G00435070 Rroxscaffold_1G00056640 Rroxscaffold_6G00413030 Rroxscaffold_6G00413040 Rroxscaffold_7G00174920 Rroxscaffold_7G00196640
rosa_rugosa	Rorug06G0062000 Rorug06G0228200 Rorug07G0130700
rosa_samantha	Rh2AG005700 Rh2AG179700 Rh2AG504500 Rh2BG188500 Rh2CG490400 Rh2DG113900 Rh2DG185500 Rh4CG227800 Rh4DG215100 Rh5CG138200 Rh6AG180900 Rh6AG341300 Rh6BG186500 Rh6BG186600 Rh6BG348700 Rh6CG180600 Rh6CG355600 Rh6DG172400 Rh6DG172900 Rh6DG259400 Rh6DG341400
rosa_wichuraiana	Rw0G015050 Rw2G014040 Rw4G018380 Rw6G006990 Rw6G015520 Rw6G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	2 cut(s)	11, 24
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	188, 189, 209, 358
AgsI	TTSAA	5 cut(s)	45, 56, 296, 316, 357
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	11, 24
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	3 cut(s)	96, 200, 211
ApaI	GGGCCC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	211, 212
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BccI	CCATC	5 cut(s)	23, 79, 139, 317, 408
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	2 cut(s)	186, 255
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	412
BfmI	CTRYAG	1 cut(s)	268
BfuI	GTATCC	2 cut(s)	186, 255
BlpI	GCTNAGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	62, 199
BmgT120I	GGNCC	2 cut(s)	211, 212
BmiI	GGNNCC	3 cut(s)	18, 213, 265
BmrFI	CCNGG	2 cut(s)	62, 199
Bpu1102I	GCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	99, 197
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 189, 209, 358
Bse8I	GATNNNNATC	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	99, 197
BseGI	GGATG	2 cut(s)	90, 376
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	188, 189, 209, 358
BseSI	GKGCMC	1 cut(s)	215
BshFI	GGCC	3 cut(s)	98, 202, 213
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	20, 62, 285
BslFI	GGGAC	2 cut(s)	372, 375
BslI	CCNNNNNNNGG	4 cut(s)	188, 189, 209, 358
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	372, 375
BsnI	GGCC	3 cut(s)	98, 202, 213
Bso31I	GGTCTC	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	16, 228, 276
Bsp1720I	GCTNAGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	98, 202, 213
BspEI	TCCGGA	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	18, 213, 265
BspPI	GGATC	2 cut(s)	11, 24
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	99, 197
BssMI	GATC	3 cut(s)	16, 228, 276
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	90, 376
BstKTI	GATC	3 cut(s)	19, 231, 279
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	16, 228, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	60, 197
BstSFI	CTRYAG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuI	GTATCC	2 cut(s)	186, 255
BsuRI	GGCC	3 cut(s)	98, 202, 213
BtsCI	GGATG	2 cut(s)	90, 376
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	211, 212
Csp6I	GTAC	1 cut(s)	187
CviJI	RGCY	6 cut(s)	60, 98, 163, 202, 213, 406
CviKI_1	RGCY	6 cut(s)	60, 98, 163, 202, 213, 406
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	18, 230, 278
DpnII	GATC	3 cut(s)	16, 228, 276
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	168
EcoO109I	RGGNCCY	2 cut(s)	211, 212
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	99
FaiI	YATR	3 cut(s)	115, 171, 224
FaqI	GGGAC	2 cut(s)	372, 375
FokI	GGATG	2 cut(s)	97, 383
FriOI	GRGCYC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	412
HaeIII	GGCC	3 cut(s)	98, 202, 213
HapII	CCGG	3 cut(s)	20, 62, 285
HinfI	GANTC	3 cut(s)	137, 292, 328
HpaII	CCGG	3 cut(s)	20, 62, 285
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	2 cut(s)	20, 78
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	75, 361
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	16, 228, 276
LpnPI	CCDG	7 cut(s)	33, 75, 149, 184, 211, 280, 298
MaeI	CTAG	1 cut(s)	412
MalI	GATC	3 cut(s)	18, 230, 278
MboI	GATC	3 cut(s)	16, 228, 276
MboII	GAAGA	2 cut(s)	238, 332
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	2 cut(s)	6, 232
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	19
MseI	TTAA	1 cut(s)	110
MspI	CCGG	3 cut(s)	20, 62, 285
MspR9I	CCNGG	2 cut(s)	62, 199
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	3 cut(s)	16, 228, 276
NlaIV	GGNNCC	3 cut(s)	18, 213, 265
PfeI	GAWTC	3 cut(s)	137, 292, 328
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	18, 213, 265
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	211, 212
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	110
Sau3AI	GATC	3 cut(s)	16, 228, 276
Sau96I	GGNCC	2 cut(s)	211, 212
ScrFI	CCNGG	2 cut(s)	62, 199
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	2 cut(s)	165, 269
SfcI	CTRYAG	1 cut(s)	268
Sse9I	AATT	2 cut(s)	6, 232
SspMI	CTAG	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	60, 197
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	52
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	6, 232
TfiI	GAWTC	3 cut(s)	137, 292, 328
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	56, 111, 239
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.