RchiOBHm_Chr6g0271741

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001076
Physical Location & Seq
Forward (+)
31633075 .. 31634048
974 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24374

Sequence Viewer

Length: 504 bp
ATGATGTACTGGGCCGTGGTTTTGGTGAGATATCTATCATTAAGCAAAGTGGAATCTTTGATGGTTTTGCTTAGCAAGCTGGTCTATGGAGACATGACCAAGTATGGGATAGCCAGGCCAAAAGAGGGCCCCTTCACTATGAAGATCAAGTACGGGAAGTACCCCGTCATTGATGTCGGCACCTGTAGTAAGATCAAGTCCGGCGAGATTCAGGTTTTACCCGCAGAAATAGCTAGCATAAGAGGAAACGATGTGGAACTCAAAAATGGGAAGTCATACCAATTTGAGTCCATCGTTTTCTGCACCGGATTCAAGAGATCAACATGTTCGTGGCTCAAGGGGGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACAAAGTGTTCCAAACCATTGGAAAGGACAGAAAGGTTTGTATTGTGTTGGACTAGCAGGAAGAGGACTATACGGATCTGGTGTGGAGGCTCAAAACACAGCCAATGATATCAAGTCGTCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

167

Amino Acids

18.52

Weight (kDa)

9.28

Isoelectric Point (pI)

14.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 460
AfaI GTAC 3 cut(s) 8, 152, 161
AfiI CCNNNNNNNGG 2 cut(s) 105, 125
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 2 cut(s) 313, 358
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 2 cut(s) 79, 233
AluI AGCT 2 cut(s) 79, 233
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 460
AoxI GGCC 3 cut(s) 12, 116, 127
ApaI GGGCCC 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 12, 127, 128
AsuHPI GGTGA 1 cut(s) 37
AsuNHI GCTAGC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BccI CCATC 3 cut(s) 55, 299, 359
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 234, 431
BfmI CTRYAG 1 cut(s) 184
BlpI GCTNAGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 12, 127, 128
BmiI GGNNCC 3 cut(s) 129, 130, 181
BmrFI CCNGG 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 19
BmtI GCTAGC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 2 cut(s) 34, 348
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 125
Bse1I ACTGG 1 cut(s) 14
Bse8I GATNNNNATC 2 cut(s) 34, 348
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 2 cut(s) 34, 348
BseLI CCNNNNNNNGG 2 cut(s) 105, 125
BseNI ACTGG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 3 cut(s) 14, 118, 129
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 201, 306
BslI CCNNNNNNNGG 2 cut(s) 105, 125
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 3 cut(s) 14, 118, 129
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 4 cut(s) 144, 192, 317, 452
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 1 cut(s) 222
BspANI GGCC 3 cut(s) 14, 118, 129
BspLI GGNNCC 3 cut(s) 129, 130, 181
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 4 cut(s) 144, 192, 317, 452
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 77, 235
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 4 cut(s) 147, 195, 320, 455
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 144, 192, 317, 452
BstMWI GCNNNNNNNGC 2 cut(s) 76, 230
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 3 cut(s) 14, 118, 129
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 77, 235
Cfr13I GGNCC 3 cut(s) 12, 127, 128
Csp6I GTAC 3 cut(s) 7, 151, 160
CviAII CATG 2 cut(s) 94, 324
CviJI RGCY 9 cut(s) 14, 79, 113, 118, 129, 233, 334, 467, 479
CviKI_1 RGCY 9 cut(s) 14, 79, 113, 118, 129, 233, 334, 467, 479
CviQI GTAC 3 cut(s) 7, 151, 160
DdeI CTNAG 1 cut(s) 71
DpnI GATC 4 cut(s) 146, 194, 319, 454
DpnII GATC 4 cut(s) 144, 192, 317, 452
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 131
Eco32I GATATC 2 cut(s) 32, 487
EcoO109I RGGNCCY 2 cut(s) 127, 128
EcoRII CCWGG 1 cut(s) 113
EcoRV GATATC 2 cut(s) 32, 487
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 2 cut(s) 97, 327
FaiI YATR 8 cut(s) 87, 95, 105, 140, 239, 277, 325, 448
FatI CATG 2 cut(s) 93, 323
FauI CCCGC 1 cut(s) 229
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 131
FspBI CTAG 2 cut(s) 234, 431
HaeIII GGCC 3 cut(s) 14, 118, 129
HapII CCGG 2 cut(s) 201, 306
Hin1II CATG 2 cut(s) 97, 327
HinfI GANTC 5 cut(s) 53, 208, 287, 309, 370
HpaII CCGG 2 cut(s) 201, 306
HphI GGTGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 230
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 97, 327
Kzo9I GATC 4 cut(s) 144, 192, 317, 452
LpnPI CCDG 9 cut(s) 65, 100, 127, 196, 197, 214, 319, 420, 441
MaeI CTAG 2 cut(s) 234, 431
MalI GATC 4 cut(s) 146, 194, 319, 454
MboI GATC 4 cut(s) 144, 192, 317, 452
MboII GAAGA 3 cut(s) 154, 374, 450
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 1 cut(s) 281
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 4 cut(s) 118, 236, 434, 457
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 328
MspI CCGG 2 cut(s) 201, 306
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 76, 230
NdeII GATC 4 cut(s) 144, 192, 317, 452
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 97, 327
NlaIV GGNNCC 3 cut(s) 129, 130, 181
NspI RCATGY 1 cut(s) 327
PciI ACATGT 1 cut(s) 323
PfeI GAWTC 4 cut(s) 53, 208, 309, 370
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PscI ACATGT 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 3 cut(s) 129, 130, 181
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 3 cut(s) 12, 127, 128
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 3 cut(s) 8, 152, 161
RsaNI GTAC 3 cut(s) 7, 151, 160
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 4 cut(s) 144, 192, 317, 452
Sau96I GGNCC 3 cut(s) 12, 127, 128
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 81, 185, 216, 235, 415
SfcI CTRYAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 281
SsiI CCGC 1 cut(s) 222
SspMI CTAG 2 cut(s) 234, 431
StyD4I CCNGG 1 cut(s) 113
TasI AATT 1 cut(s) 281
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 4 cut(s) 53, 208, 309, 370
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 465
XceI RCATGY 1 cut(s) 327
XspI CTAG 2 cut(s) 234, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.