RchiOBHm_Chr4g0418611

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001076
Physical Location & Seq
Reverse (-)
44050097 .. 44052612
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38859

Sequence Viewer

Length: 501 bp
ATGGAAATTTCTTTGGATCTGGCAAACGATGGTGCAAAGACTTCAATCATTGTTCAAAGCTCGGTTCATTTTTTGTCAAGAAGGATGGTTTACTTGGCCTTGGTTTTGTTAAGATATCTTTCATTTAGCAGAGTGGATTTTTTGATGGTTTTGCTTAGCAAGTTCGTTTATGGACGCCTGACCCAAGTACAGGATAGCCAGGCTAAAAGGGGGCCCTTTCTTATGAATATCAAGTACGACAAGTATCCGGCCATTGATGTCGGCGCCTGTAGTAAGATCAAGTCCGACGAGATTAAGGTTTTACCCGCAGAAATAGGCAGCATAAGAGGAAGCGATGTGGAACTCAAAAAGGGGAAGTCATACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGACATCAACAAGTTTGTGGCTCAAGGCAGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACCAAGTTCTCCAAACCATTCGAAGGGACAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

166

Amino Acids

18.66

Weight (kDa)

9.28

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 1 cut(s) 306
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 6
AcyI GRCGYC 2 cut(s) 175, 264
AfaI GTAC 2 cut(s) 189, 236
AfiI CCNNNNNNNGG 2 cut(s) 190, 484
AgsI TTSAA 4 cut(s) 45, 56, 397, 442
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwI GGATC 1 cut(s) 24
AoxI GGCC 3 cut(s) 96, 212, 249
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 6
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 212, 213
AsuII TTCGAA 1 cut(s) 482
BaeGI GKGCMC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 330
BccI CCATC 5 cut(s) 23, 79, 139, 383, 443
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 268
BfoI RGCGCY 1 cut(s) 267
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 319
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 212, 213
BmiI GGNNCC 3 cut(s) 213, 214, 265
BmrFI CCNGG 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 2 cut(s) 175, 264
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 484
Bse1I ACTGG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 190, 484
BseNI ACTGG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 370
BshFI GGCC 3 cut(s) 98, 214, 251
BshNI GGYRCC 1 cut(s) 263
BsiSI CCGG 2 cut(s) 248, 390
BslI CCNNNNNNNGG 2 cut(s) 190, 484
BsnI GGCC 3 cut(s) 98, 214, 251
Bsp119I TTCGAA 1 cut(s) 482
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 16, 276
Bsp1720I GCTNAGC 1 cut(s) 155
BspACI CCGC 1 cut(s) 306
BspANI GGCC 3 cut(s) 98, 214, 251
BspLI GGNNCC 3 cut(s) 213, 214, 265
BspPI GGATC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 16, 276
BssNI GRCGYC 2 cut(s) 175, 264
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 200
BstACI GRCGYC 2 cut(s) 175, 264
BstBI TTCGAA 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 19, 279
BstMBI GATC 2 cut(s) 16, 276
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 268
BstSLI GKGCMC 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 3 cut(s) 98, 214, 251
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 90
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 212, 213
CseI GACGC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 188, 235
CviJI RGCY 7 cut(s) 60, 98, 198, 203, 214, 251, 418
CviKI_1 RGCY 7 cut(s) 60, 98, 198, 203, 214, 251, 418
CviQI GTAC 2 cut(s) 188, 235
DdeI CTNAG 1 cut(s) 155
DinI GGCGCC 1 cut(s) 265
DpnI GATC 2 cut(s) 18, 278
DpnII GATC 2 cut(s) 16, 276
EaeI YGGCCR 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 116
EcoO109I RGGNCCY 2 cut(s) 212, 213
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 216
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 99
FaiI YATR 4 cut(s) 171, 224, 323, 361
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 319
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 3 cut(s) 98, 214, 251
HapII CCGG 2 cut(s) 248, 390
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 2 cut(s) 175, 264
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 3 cut(s) 371, 393, 454
HpaII CCGG 2 cut(s) 248, 390
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 78, 397
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 3 cut(s) 75, 478, 487
HpyCH4V TGCA 2 cut(s) 35, 387
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 2 cut(s) 175, 264
HspAI GCGC 1 cut(s) 264
KasI GGCGCC 1 cut(s) 263
Kzo9I GATC 2 cut(s) 16, 276
LpnPI CCDG 9 cut(s) 5, 176, 185, 191, 212, 261, 280, 377, 403
Lsp1109I GCAGC 1 cut(s) 330
MalI GATC 2 cut(s) 18, 278
MboI GATC 2 cut(s) 16, 276
MboII GAAGA 1 cut(s) 458
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 6
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 1 cut(s) 320
MseI TTAA 2 cut(s) 110, 294
MspI CCGG 2 cut(s) 248, 390
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
NarI GGCGCC 1 cut(s) 264
NdeII GATC 2 cut(s) 16, 276
NlaIV GGNNCC 3 cut(s) 213, 214, 265
NspV TTCGAA 1 cut(s) 482
PfeI GAWTC 2 cut(s) 393, 454
PkrI GCNGC 1 cut(s) 320
PleI GAGTC 1 cut(s) 379
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 213, 214, 265
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 212, 213
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 189, 236
RsaNI GTAC 2 cut(s) 188, 235
SaqAI TTAA 2 cut(s) 110, 294
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 2 cut(s) 16, 276
Sau96I GGNCC 2 cut(s) 212, 213
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 216
SetI ASST 2 cut(s) 62, 300
SfcI CTRYAG 1 cut(s) 268
SfoI GGCGCC 1 cut(s) 265
SfuI TTCGAA 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 306
SspDI GGCGCC 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 1 cut(s) 482
TasI AATT 1 cut(s) 6
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 393, 454
Tru1I TTAA 2 cut(s) 110, 294
Tru9I TTAA 2 cut(s) 110, 294
TseI GCWGC 1 cut(s) 318
TspDTI ATGAA 3 cut(s) 56, 111, 239
XapI RAATTY 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.