Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001076

Physical Location & Seq

Genomic Coordinates Reverse (-)

15478074 .. 15479100

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTTTACTTGGCCTTGGTTTTGTTAAGATATCTTTCATTTAGCAAAGTGGATTCTTTGATGGATTTGCTTAGCAAGCTGGTTTATGGAGACCTGACCCAAGTACGGGATAGCCAGGCCAAAAGAGGGCCCTTTCTTTATGAAGATCAAGTTTTACCTGCAGAAATAGGCAGCATAAGAGGAAGCCATGTGGAACTCAAAAAGGGGAAGTCATACCAGTTTGAGTCCATCATTTTCTGCACCGGATTCAAGACATCAACAAGTTTGTGGCTCAAGGCAGATGATTATCTTTTGAACGAAGATGGGATTCCAAGACCAAGTTCTCCAAACCATTCGAAGGGACAGAAGGTTATGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

119

Amino Acids

13.43

Weight (kDa)

8.67

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001076)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24750 FvH4_2g24750
malus_domestica	MD00G1056000.v1.1
prunus_persica	Prupe.8G252500_v2.0.a1 Prupe.8G252500_v2.0.a1
pyrus_communis	pycom03g21970 pycom03g21980
rosa_chinensis	RchiOBHm_Chr2g0097031 RchiOBHm_Chr4g0418611 RchiOBHm_Chr5g0016501 RchiOBHm_Chr6g0271581 RchiOBHm_Chr6g0271731 RchiOBHm_Chr6g0271741 RchiOBHm_Chr6g0283091 RchiOBHm_Chr6g0292571
rosa_laevigata	RLG00000001339 RLG00000007851 RLG00000012008 RLG00000013718 RLG00000013733 RLG00000017406
rosa_multiflora	Rmu_co8394867.1_g000001 Rmu_sc0000239.1_g000054 Rmu_sc0000515.1_g000003
rosa_roxburghii	Rroxscaffold_173G00435070 Rroxscaffold_1G00056640 Rroxscaffold_6G00413030 Rroxscaffold_6G00413040 Rroxscaffold_7G00174920 Rroxscaffold_7G00196640
rosa_rugosa	Rorug06G0062000 Rorug06G0228200 Rorug07G0130700
rosa_samantha	Rh2AG005700 Rh2AG179700 Rh2AG504500 Rh2BG188500 Rh2CG490400 Rh2DG113900 Rh2DG185500 Rh4CG227800 Rh4DG215100 Rh5CG138200 Rh6AG180900 Rh6AG341300 Rh6BG186500 Rh6BG186600 Rh6BG348700 Rh6CG180600 Rh6CG355600 Rh6DG172400 Rh6DG172900 Rh6DG259400 Rh6DG341400
rosa_wichuraiana	Rw0G015050 Rw2G014040 Rw4G018380 Rw6G006990 Rw6G015520 Rw6G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	4 cut(s)	105, 106, 126, 337
AgsI	TTSAA	2 cut(s)	250, 295
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	3 cut(s)	12, 117, 128
ApaI	GGGCCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	128, 129
AsuII	TTCGAA	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	3 cut(s)	55, 236, 296
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	172
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	128, 129
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 106, 126, 337
Bse1I	ACTGG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	15
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	4 cut(s)	105, 106, 126, 337
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	14, 119, 130
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	4 cut(s)	105, 106, 126, 337
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	3 cut(s)	14, 119, 130
Bso31I	GGTCTC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	335
Bsp120I	GGGCCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	145
Bsp1720I	GCTNAGC	1 cut(s)	71
BspANI	GGCC	3 cut(s)	14, 119, 130
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	14, 119, 130
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	128, 129
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	14, 79, 114, 119, 130, 186, 271
CviKI_1	RGCY	7 cut(s)	14, 79, 114, 119, 130, 186, 271
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	32
EcoO109I	RGGNCCY	2 cut(s)	128, 129
EcoRII	CCWGG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	191
FaiI	YATR	6 cut(s)	87, 141, 176, 189, 214, 353
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	172
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	172
HaeIII	GGCC	3 cut(s)	14, 119, 130
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	4 cut(s)	53, 224, 246, 307
HpaII	CCGG	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	331, 340
HpyCH4V	TGCA	2 cut(s)	161, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	65, 101, 107, 128, 171, 230, 256
Lsp1109I	GCAGC	1 cut(s)	183
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	155, 311
MhlI	GDGCHC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	119, 173
MseI	TTAA	2 cut(s)	26, 358
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	53, 246, 307
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	130
PspOMI	GGGCCC	1 cut(s)	128
PspPI	GGNCC	2 cut(s)	128, 129
PstI	CTGCAG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	26, 358
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	2 cut(s)	128, 129
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	81, 96, 160, 351
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	15
TaqI	TCGA	1 cut(s)	335
TfiI	GAWTC	3 cut(s)	53, 246, 307
Tru1I	TTAA	2 cut(s)	26, 358
Tru9I	TTAA	2 cut(s)	26, 358
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	27, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.