Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001076

Physical Location & Seq

Genomic Coordinates Reverse (-)

17242194 .. 17243324

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG179700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAGATCAAGTACGACAAGTATCCGGCCATTGATGTCGGCGCCTGTAGTAAGATCAAGTCCGACGAGATTCAGGTTTTACCTGCAGAAATAGGCAGCATAAGAGGAAGCCATGTGGAACTCAAAAGGGGGAAGTCATACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGACATCAACAAGTTTGTGGCTCAAGGCAGATGATTATCTTTTGAAGGAAGATGGGATTCCAAGACCAAGTTCTCCAAACCATTCGAAGGGACAGAAGGTTTGGAGCCAAAATTTGGTTAATCACCTCTCTTCGGGATACTTGCTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

108

Amino Acids

12.11

Weight (kDa)

9.1

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001076)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24750 FvH4_2g24750
malus_domestica	MD00G1056000.v1.1
prunus_persica	Prupe.8G252500_v2.0.a1 Prupe.8G252500_v2.0.a1
pyrus_communis	pycom03g21970 pycom03g21980
rosa_chinensis	RchiOBHm_Chr2g0097031 RchiOBHm_Chr4g0418611 RchiOBHm_Chr5g0016501 RchiOBHm_Chr6g0271581 RchiOBHm_Chr6g0271731 RchiOBHm_Chr6g0271741 RchiOBHm_Chr6g0283091 RchiOBHm_Chr6g0292571
rosa_laevigata	RLG00000001339 RLG00000007851 RLG00000012008 RLG00000013718 RLG00000013733 RLG00000017406
rosa_multiflora	Rmu_co8394867.1_g000001 Rmu_sc0000239.1_g000054 Rmu_sc0000515.1_g000003
rosa_roxburghii	Rroxscaffold_173G00435070 Rroxscaffold_1G00056640 Rroxscaffold_6G00413030 Rroxscaffold_6G00413040 Rroxscaffold_7G00174920 Rroxscaffold_7G00196640
rosa_rugosa	Rorug06G0062000 Rorug06G0228200 Rorug07G0130700
rosa_samantha	Rh2AG005700 Rh2AG179700 Rh2AG504500 Rh2BG188500 Rh2CG490400 Rh2DG113900 Rh2DG185500 Rh4CG227800 Rh4DG215100 Rh5CG138200 Rh6AG180900 Rh6AG341300 Rh6BG186500 Rh6BG186600 Rh6BG348700 Rh6CG180600 Rh6CG355600 Rh6DG172400 Rh6DG172900 Rh6DG259400 Rh6DG341400
rosa_wichuraiana	Rw0G015050 Rw2G014040 Rw4G018380 Rw6G006990 Rw6G015520 Rw6G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	286
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	262, 289, 307
AgsI	TTSAA	2 cut(s)	175, 220
AjuI	GAANNNNNNNTTGG	2 cut(s)	229, 261
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	41
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	161, 221
BciVI	GTATCC	2 cut(s)	33, 305
BfmI	CTRYAG	2 cut(s)	46, 84
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	91
BfuI	GTATCC	2 cut(s)	33, 305
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	43, 281
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 289, 307
Bse1I	ACTGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	210
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	262, 289, 307
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	108
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	26, 168
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	262, 289, 307
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	6, 54
BspANI	GGCC	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	43, 281
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	6, 54
BssNI	GRCGYC	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	9, 57
BstMBI	GATC	2 cut(s)	6, 54
BstSFI	CTRYAG	2 cut(s)	46, 84
BstV1I	GCAGC	1 cut(s)	108
BsuI	GTATCC	2 cut(s)	33, 305
BsuRI	GGCC	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	4 cut(s)	29, 111, 196, 282
CviKI_1	RGCY	4 cut(s)	29, 111, 196, 282
CviQI	GTAC	1 cut(s)	13
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	2 cut(s)	8, 56
DpnII	GATC	2 cut(s)	6, 54
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	1 cut(s)	116
FaiI	YATR	3 cut(s)	101, 114, 139
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	26, 168
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	4 cut(s)	70, 149, 171, 232
HpaII	CCGG	2 cut(s)	26, 168
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	175, 309
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	214, 256, 265
HpyCH4V	TGCA	2 cut(s)	86, 165
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	6, 54
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	6 cut(s)	39, 58, 59, 96, 155, 181
Lsp1109I	GCAGC	1 cut(s)	108
MalI	GATC	2 cut(s)	8, 56
MboI	GATC	2 cut(s)	6, 54
MboII	GAAGA	3 cut(s)	16, 236, 297
MluCI	AATT	1 cut(s)	286
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	2 cut(s)	98, 311
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	26, 168
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	2 cut(s)	6, 54
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	2 cut(s)	43, 281
NspV	TTCGAA	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	70, 171, 232
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	43, 281
PstI	CTGCAG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	6, 54
SchI	GAGTC	1 cut(s)	158
SetI	ASST	4 cut(s)	78, 85, 276, 303
SfcI	CTRYAG	2 cut(s)	46, 84
SfoI	GGCGCC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	286
SspDI	GGCGCC	1 cut(s)	41
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	286
TfiI	GAWTC	3 cut(s)	70, 171, 232
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.