Rroxscaffold_6G00413040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001076
Physical Location & Seq
Forward (+)
35478034 .. 35489403
11370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413040.1

Sequence Viewer

Length: 303 bp
ATGTGGAACTCAAAAAGGGGAAGTCGTACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGACATCAACAAGCAGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACCAAGTTCTCCAAATCATTCAAAGGGACACAAGGGAAAAACAAAAGCAGAAAAATGGTGTCCCTATGTTAGGCAAAACACAGGCAGGTCAATAAAGGCAATACAGGGACTGCCCGAACTGGTCTCGTCAAACATGAACTTTGGTAGTCGGGATGCGTTGGTATTGAGCTCATTTCATGATAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.15

Weight (kDa)

9.93

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 3 cut(s) 63, 94, 135
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 223
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 284
BccI CCATC 2 cut(s) 49, 95
BcoDI GTCTC 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 189
BglII AGATCT 1 cut(s) 297
BmsI GCATC 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 2 cut(s) 30, 237
Bse8I GATNNNNATC 1 cut(s) 84
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 30, 237
BsgI GTGCAG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 3 cut(s) 153, 159, 234
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 3 cut(s) 153, 159, 234
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 297
BspHI TCATGA 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 241
BsrI ACTGG 2 cut(s) 30, 237
BssMI GATC 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BtsCI GGATG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 223
CciI TCATGA 1 cut(s) 289
Csp6I GTAC 1 cut(s) 27
CviAII CATG 2 cut(s) 247, 290
CviJI RGCY 1 cut(s) 282
CviKI_1 RGCY 1 cut(s) 282
CviQI GTAC 1 cut(s) 27
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 282
EcoNI CCTNNNNNAGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 284
FaeI CATG 2 cut(s) 250, 293
FaiI YATR 3 cut(s) 180, 248, 291
FaqI GGGAC 3 cut(s) 153, 159, 234
FatI CATG 2 cut(s) 246, 289
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 284
HapII CCGG 1 cut(s) 56
Hin1II CATG 2 cut(s) 250, 293
HinfI GANTC 3 cut(s) 37, 59, 106
HpaII CCGG 1 cut(s) 56
Hpy188III TCNNGA 3 cut(s) 63, 263, 290
HpyCH4V TGCA 1 cut(s) 53
Hsp92II CATG 2 cut(s) 250, 293
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 6 cut(s) 43, 69, 180, 184, 203, 218
LweI GCATC 1 cut(s) 256
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 284
MlyI GAGTC 1 cut(s) 46
MspI CCGG 1 cut(s) 56
NdeII GATC 1 cut(s) 297
NlaIII CATG 2 cut(s) 250, 293
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 2 cut(s) 59, 106
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SacI GAGCTC 1 cut(s) 284
Sau3AI GATC 1 cut(s) 297
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 284
SetI ASST 2 cut(s) 203, 284
SfaNI GCATC 1 cut(s) 256
SstI GAGCTC 1 cut(s) 284
TfiI GAWTC 2 cut(s) 59, 106
TspDTI ATGAA 2 cut(s) 263, 278
XagI CCTNNNNNAGG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.