Rh6DG172400

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001076
Physical Location & Seq
Forward (+)
29933103 .. 29934484
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG172400.1

Sequence Viewer

Length: 1095 bp
ATGGCCGGCTGTCTCAGCCGGCTCGAAATCCCATACCTATTTCTCGAAAGAGAGGACTGTTATGCTCCTCTTTGGAAGAAGTACTCCTACGACCGTCTCCACCTTCACCTTCAGAAGCAGGTCTGTGAGCTCCCCCACATGTCATTCCCGTCCTCTTATCCCACGTATGTACCCAAAAAACAGTTCATTCAGTACTTGGATGACTACGTTGCACATTTCAAGATCAGTCCCATGTACCACAGAAATGTTGAGTCTGCAAGTTATGATCAGGGTTCTGAGAGATGGGTTGTGAAGACGATAAACAATGATGAGGGCTGTCGTGGTGAGGAGGAGGAATTTTTGGGAAGGTTTTTGGTGGTGGCTACTGGTGAAACAACAGATCCATATGTGCCAGAGATTGAAGGGTTGAGTAGTTTCAATGGGGAGGTTCTTCACTCGACCCGATTCAAATCCGGGGCTGAGTTCAAGAACAAGAATGTTTTGGTTGTCGGCTCTGGGAATTCCGGCCTGGAAATTGCTTTGGATCTGGCAAACCATGGTGCAAAGACTTCAATCATTGTTCGGAGCCCGTTTCATTTTTTGTCAAGGAGGATGATGTACTGGGCCGTGGTTTTGGTGAGATATCTATCATTAAGCAAAGTGGAATCTTTGATGGTTTTGCTTAGCAAGCTGGTCTATGGAGACATGACCAAGTATGGGATAGCCAGGCCAAAAGAGGGCCCTTTCACTATGAAGATCAAGTACGGGAAGTACCCCATCATTGATGTCGGCACCTGTAGTAAGATCAAGTCCGGCGAGATTCAGGTTTTACCCGCAGAAATAGCTAGCATAAGAGGAAACGATGTGGAACTCAAAAATGGGAAGTCATACCAATTTGAGTCCATCGTTTTCTGCACAGGATTCAAGAGATCAACATGTTCGTGGCTCAAGGGGGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACAAAGTGTTCCAAACCATTGGAAAGGACAGAAAGGTTTGTATTGTGTTGGACTAGCAGGAAGAGGACTATACGGATCTGGTGTGGAGGCTCAAAACACAGCCAATGATATCAAGTCGTCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

364

Amino Acids

41.09

Weight (kDa)

8.59

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 6 - 190 5.4e-16 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 40 - 302 1.9e-17 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 54 - 185 4.5e-14 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Pyr_redox_2 PF07992 86 - 190 1.3e-09 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 770
AciI CCGC 1 cut(s) 813
AclWI GGATC 3 cut(s) 374, 531, 1051
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 335, 499
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 7 cut(s) 83, 171, 194, 236, 599, 743, 752
AfiI CCNNNNNNNGG 2 cut(s) 696, 716
AflIII ACRYGT 2 cut(s) 138, 914
AgsI TTSAA 8 cut(s) 220, 401, 418, 448, 466, 552, 904, 949
AjnI CCWGG 2 cut(s) 507, 704
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 130, 670, 824
AluI AGCT 3 cut(s) 130, 670, 824
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 3 cut(s) 17, 101, 675
AlwI GGATC 3 cut(s) 374, 531, 1051
AoxI GGCC 5 cut(s) 3, 505, 603, 707, 718
ApaI GGGCCC 1 cut(s) 722
ApoI RAATTY 2 cut(s) 335, 499
AspS9I GGNCC 3 cut(s) 603, 718, 719
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 4 cut(s) 98, 335, 380, 628
AsuNHI GCTAGC 1 cut(s) 824
BaeGI GKGCMC 1 cut(s) 722
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BanI GGYRCC 1 cut(s) 770
BanII GRGCYC 3 cut(s) 132, 569, 722
BarI GAAGNNNNNNTAC 4 cut(s) 71, 103, 725, 757
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 5 cut(s) 276, 646, 764, 890, 950
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 2 cut(s) 509, 706
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 3 cut(s) 17, 101, 675
BfaI CTAG 2 cut(s) 825, 1022
BfmI CTRYAG 1 cut(s) 775
BfuAI ACCTGC 1 cut(s) 109
BlpI GCTNAGC 1 cut(s) 662
BmcAI AGTACT 2 cut(s) 83, 194
Bme1390I CCNGG 3 cut(s) 454, 509, 706
BmgT120I GGNCC 3 cut(s) 603, 718, 719
BmiI GGNNCC 3 cut(s) 566, 720, 772
BmrFI CCNGG 3 cut(s) 454, 509, 706
BmrI ACTGGG 1 cut(s) 610
BmtI GCTAGC 1 cut(s) 828
BmuI ACTGGG 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 165
BsaBI GATNNNNATC 3 cut(s) 448, 625, 939
BsaJI CCNNGG 3 cut(s) 453, 535, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 696, 716
Bse118I RCCGGY 2 cut(s) 5, 18
Bse1I ACTGG 2 cut(s) 370, 605
Bse8I GATNNNNATC 3 cut(s) 448, 625, 939
BseBI CCWGG 2 cut(s) 509, 706
BseDI CCNNGG 3 cut(s) 453, 535, 606
BseGI GGATG 3 cut(s) 205, 597, 940
BseJI GATNNNNATC 3 cut(s) 448, 625, 939
BseLI CCNNNNNNNGG 2 cut(s) 696, 716
BseMII CTCAG 3 cut(s) 28, 267, 450
BseNI ACTGG 2 cut(s) 370, 605
BseRI GAGGAG 3 cut(s) 57, 341, 344
BseSI GKGCMC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 877
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 5 cut(s) 5, 507, 605, 709, 720
BshNI GGYRCC 1 cut(s) 770
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 5 cut(s) 6, 19, 453, 504, 792
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 696, 716
BsmAI GTCTC 3 cut(s) 17, 101, 675
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 5 cut(s) 5, 507, 605, 709, 720
Bsp120I GGGCCC 1 cut(s) 718
Bsp1286I GDGCHC 3 cut(s) 132, 569, 722
Bsp143I GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
Bsp1720I GCTNAGC 1 cut(s) 662
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 1 cut(s) 813
BspANI GGCC 5 cut(s) 5, 507, 605, 709, 720
BspCNI CTCAG 3 cut(s) 27, 268, 451
BspLI GGNNCC 3 cut(s) 566, 720, 772
BspMI ACCTGC 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 3 cut(s) 374, 531, 1051
BspT107I GGYRCC 1 cut(s) 770
BsrFI RCCGGY 2 cut(s) 5, 18
BsrI ACTGG 2 cut(s) 370, 605
BssAI RCCGGY 2 cut(s) 5, 18
BssECI CCNNGG 3 cut(s) 453, 535, 606
BssMI GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 2 cut(s) 509, 706
Bst4CI ACNGT 3 cut(s) 59, 95, 183
Bst6I CTCTTC 1 cut(s) 1024
BstBAI YACGTR 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 7, 20, 668, 826
BstDEI CTNAG 4 cut(s) 14, 276, 459, 662
BstDSI CCRYGG 2 cut(s) 535, 606
BstF5I GGATG 3 cut(s) 205, 597, 940
BstKTI GATC 8 cut(s) 225, 268, 382, 526, 738, 786, 911, 1046
BstMAI GTCTC 3 cut(s) 17, 101, 675
BstMBI GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 15, 667, 821
BstNI CCWGG 2 cut(s) 509, 706
BstNSI RCATGY 2 cut(s) 142, 918
BstSCI CCNGG 3 cut(s) 452, 507, 704
BstSFI CTRYAG 1 cut(s) 775
BstSLI GKGCMC 1 cut(s) 722
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 3 cut(s) 379, 523, 1043
BstXI CCANNNNNNTGG 1 cut(s) 987
BstYI RGATCY 3 cut(s) 379, 523, 1043
BsuRI GGCC 5 cut(s) 5, 507, 605, 709, 720
BtgI CCRYGG 2 cut(s) 535, 606
BtsCI GGATG 3 cut(s) 205, 597, 940
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 4 cut(s) 7, 20, 668, 826
Cfr10I RCCGGY 2 cut(s) 5, 18
Cfr13I GGNCC 3 cut(s) 603, 718, 719
Csp6I GTAC 7 cut(s) 82, 170, 193, 235, 598, 742, 751
CviAII CATG 5 cut(s) 139, 232, 536, 685, 915
CviQI GTAC 7 cut(s) 82, 170, 193, 235, 598, 742, 751
DdeI CTNAG 4 cut(s) 14, 276, 459, 662
DpnI GATC 8 cut(s) 224, 267, 381, 525, 737, 785, 910, 1045
DpnII GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1024
EarI CTCTTC 1 cut(s) 1024
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 3 cut(s) 132, 569, 722
Eco32I GATATC 2 cut(s) 623, 1078
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 2 cut(s) 718, 719
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 2 cut(s) 507, 704
EcoRV GATATC 2 cut(s) 623, 1078
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 3 cut(s) 132, 569, 722
ErhI CCWWGG 1 cut(s) 535
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 142, 235, 539, 688, 918
FaqI GGGAC 1 cut(s) 213
FatI CATG 5 cut(s) 138, 231, 535, 684, 914
FauI CCCGC 1 cut(s) 820
FauNDI CATATG 1 cut(s) 385
FbaI TGATCA 1 cut(s) 265
FokI GGATG 3 cut(s) 212, 604, 947
FriOI GRGCYC 3 cut(s) 132, 569, 722
FspBI CTAG 2 cut(s) 825, 1022
HaeIII GGCC 5 cut(s) 5, 507, 605, 709, 720
HapII CCGG 5 cut(s) 6, 19, 453, 504, 792
Hin1II CATG 5 cut(s) 142, 235, 539, 688, 918
HinfI GANTC 7 cut(s) 251, 444, 644, 799, 878, 900, 961
HpaII CCGG 5 cut(s) 6, 19, 453, 504, 792
HphI GGTGA 4 cut(s) 98, 335, 380, 628
Hpy188I TCNGA 3 cut(s) 114, 277, 564
Hpy188III TCNNGA 4 cut(s) 44, 220, 466, 904
HpyAV CCTTC 4 cut(s) 113, 119, 339, 395
HpyCH4III ACNGT 3 cut(s) 59, 95, 183
HpyCH4IV ACGT 2 cut(s) 164, 207
HpyCH4V TGCA 4 cut(s) 212, 257, 542, 894
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 667, 821
HpyF3I CTNAG 4 cut(s) 14, 276, 459, 662
HpySE526I ACGT 2 cut(s) 164, 207
Hsp92II CATG 5 cut(s) 142, 235, 539, 688, 918
KroI GCCGGC 2 cut(s) 5, 18
KroNI GCCGGC 2 cut(s) 7, 20
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
LmnI GCTCC 3 cut(s) 70, 135, 564
MaeI CTAG 2 cut(s) 825, 1022
MaeII ACGT 2 cut(s) 164, 207
MalI GATC 8 cut(s) 224, 267, 381, 525, 737, 785, 910, 1045
MboI GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
MboII GAAGA 6 cut(s) 88, 304, 422, 745, 965, 1041
MflI RGATCY 3 cut(s) 379, 523, 1043
MhlI GDGCHC 3 cut(s) 132, 569, 722
MluCI AATT 4 cut(s) 335, 499, 513, 872
MlyI GAGTC 2 cut(s) 260, 887
MmeI TCCRAC 1 cut(s) 997
MroNI GCCGGC 2 cut(s) 5, 18
MseI TTAA 1 cut(s) 632
MslI CAYNNNNRTG 2 cut(s) 243, 919
MspI CCGG 5 cut(s) 6, 19, 453, 504, 792
MspR9I CCNGG 3 cut(s) 454, 509, 706
MvaI CCWGG 2 cut(s) 509, 706
MwoI GCNNNNNNNGC 3 cut(s) 15, 667, 821
NaeI GCCGGC 2 cut(s) 7, 20
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 535
NdeI CATATG 1 cut(s) 385
NdeII GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
NgoMIV GCCGGC 2 cut(s) 5, 18
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 5 cut(s) 142, 235, 539, 688, 918
NlaIV GGNNCC 3 cut(s) 566, 720, 772
NspI RCATGY 2 cut(s) 142, 918
PciI ACATGT 2 cut(s) 138, 914
PdiI GCCGGC 2 cut(s) 7, 20
PfeI GAWTC 5 cut(s) 444, 644, 799, 900, 961
PleI GAGTC 2 cut(s) 259, 886
PpsI GAGTC 2 cut(s) 259, 886
Ppu21I YACGTR 1 cut(s) 165
PscI ACATGT 2 cut(s) 138, 914
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 507, 704
PspGI CCWGG 2 cut(s) 507, 704
PspN4I GGNNCC 3 cut(s) 566, 720, 772
PspOMI GGGCCC 1 cut(s) 718
PspPI GGNCC 3 cut(s) 603, 718, 719
PsuI RGATCY 3 cut(s) 379, 523, 1043
RsaI GTAC 7 cut(s) 83, 171, 194, 236, 599, 743, 752
RsaNI GTAC 7 cut(s) 82, 170, 193, 235, 598, 742, 751
RseI CAYNNNNRTG 2 cut(s) 243, 919
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 632
Sau3AI GATC 8 cut(s) 222, 265, 379, 523, 735, 783, 908, 1043
Sau96I GGNCC 3 cut(s) 603, 718, 719
ScaI AGTACT 2 cut(s) 83, 194
SchI GAGTC 2 cut(s) 260, 887
ScrFI CCNGG 3 cut(s) 454, 509, 706
SduI GDGCHC 3 cut(s) 132, 569, 722
SfcI CTRYAG 1 cut(s) 775
SmiMI CAYNNNNRTG 2 cut(s) 243, 919
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 4 cut(s) 335, 499, 513, 872
SsiI CCGC 1 cut(s) 813
SspMI CTAG 2 cut(s) 825, 1022
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 452, 507, 704
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 3 cut(s) 59, 95, 183
TaiI ACGT 2 cut(s) 167, 210
TaqI TCGA 3 cut(s) 24, 45, 437
TasI AATT 4 cut(s) 335, 499, 513, 872
TatI WGTACW 3 cut(s) 81, 192, 597
TfiI GAWTC 5 cut(s) 444, 644, 799, 900, 961
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TspDTI ATGAA 3 cut(s) 175, 563, 746
TspGWI ACGGA 1 cut(s) 1056
XapI RAATTY 2 cut(s) 335, 499
XceI RCATGY 2 cut(s) 142, 918
XspI CTAG 2 cut(s) 825, 1022
ZrmI AGTACT 2 cut(s) 83, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.