MD00G1056000.v1.1

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001076
Physical Location & Seq
Forward (+)
10506121 .. 10507905
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1056000.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGCAGGAACATAATAAGTTAGTGATCATCGTTGGGGCCGGTCCCTCCGGCCTGGCCACGGCCGGATGTCTGAGCCGGCTCGCGATCCCATACATAGTCCTAGAAAGAGAGGACTGTTTTGCCTCTCTGTGGAAGAAATACTCCTACGATCGTCTCCACCTCCACCTTCAAAAGCAGTTTTGTGAGCTTCCTCACATGTCGTTTCCAACCTCTTACCCCACATACGTGCCCAAAAACCAGTTTATCCAGTACTTAGAGGACTATGTGTCCCACTTCAGTATTAGTCCAATGTACAAGAGAAATGTGGAGTCTGCAGAATATGATCAAGTCTCCAAGAAATGGACTGTGAAGGCGAAAAATATTGGTGGTTCCGGCGAGATGGAGGAGTATTTTGGAGGCTTTTTGGTGGTGGCTACTGGGGAAGCAACTAACCCGTATACTCCGGAGATTGAAGGTTTGAGTAGTTTTAATGGTGATGTTCTTCACTCAACAAAATATAAATCCGGGAAGGAGTTCGAAAATAAGAAGGTTTTGGTTGTTGGGGCTGGGAATTCCGGCATGGAGATTTCACTAGACTTGGCGAACCATGGTGCTAAAACTTCAATCATCGTTCGAAGCCCGGTCCATTTTCTCTCAAGGGGGATGGTTTACTTGGCCTTGGTTTTGTTGAAACATTTTCCATTAAGCATGATTGATTCTTTGCTGGTTCTGCTTAGCAAGCTGGTCTACGGAAACCTAGCTAGCTATGGGATAGAGAGGCCACAAGAGGGTCCTTTTTATATGAAGGGGAAGTACGGAAAGTATCCGGCCATTGACGTTGGTGCCTATCGAAAGATCAAATCCGGCGAGATTCAAGTTTTGCCGGCCGAAATAGGCAGCATAAGAGGCGGCCAGGTGGAACTGAAAAACGGAAAGTCATACCCATTCGATGCAATCATTTTCTGTACCGGATTCAAGAGATCGACGAATTTGTGGCTTAAGGGAGATGATTATCTTTTAAAAGAAGATGGAATTCCACGACCAAGCATCCCTAATCATTGGAAGGGAAAGAATGGATTATATTGCGTGGGACTATCGAGAAGAGGATTATATGGATCTAAGGAGGATGCTCAAAACATAGCCAATGATATCAAGTCATTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

382

Amino Acids

42.5

Weight (kDa)

8.96

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 6 - 318 6.7e-21 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 8 - 207 2.1e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 9 - 207 1.6e-25 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 70 - 202 3.1e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 821
AccB7I CCANNNNNTGG 1 cut(s) 339
AccI GTMKAC 2 cut(s) 437, 726
AccII CGCG 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 1 cut(s) 888
AclWI GGATC 2 cut(s) 79, 1102
AcoI YGGCCR 5 cut(s) 54, 60, 807, 864, 889
AcsI RAATTY 3 cut(s) 550, 967, 1011
AcuI CTGAAG 1 cut(s) 259
AfaI GTAC 4 cut(s) 251, 293, 794, 946
AfiI CCNNNNNNNGG 4 cut(s) 58, 129, 339, 767
AflII CTTAAG 1 cut(s) 977
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 6 cut(s) 170, 452, 603, 670, 854, 955
AhdI GACNNNNNGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 51, 891
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 4 cut(s) 187, 721, 740, 744
AluI AGCT 4 cut(s) 187, 721, 740, 744
Alw26I GTCTC 2 cut(s) 158, 334
AlwI GGATC 2 cut(s) 79, 1102
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 9 cut(s) 36, 49, 54, 60, 654, 758, 807, 864, 889
ApeKI GCWGC 1 cut(s) 876
ApoI RAATTY 3 cut(s) 550, 967, 1011
Asp700I GAANNNNTTC 1 cut(s) 512
AspS9I GGNCC 4 cut(s) 36, 41, 622, 770
AsuC2I CCSGG 2 cut(s) 505, 620
AsuHPI GGTGA 1 cut(s) 485
AsuII TTCGAA 2 cut(s) 516, 613
AsuNHI GCTAGC 1 cut(s) 740
AvaII GGWCC 3 cut(s) 41, 622, 770
BaeGI GKGCMC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 821
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
BbvI GCAGC 1 cut(s) 888
BccI CCATC 3 cut(s) 373, 637, 1001
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 2 cut(s) 53, 893
BciVI GTATCC 1 cut(s) 813
BclI TGATCA 2 cut(s) 24, 322
BcnI CCSGG 2 cut(s) 505, 620
BcoDI GTCTC 2 cut(s) 158, 334
BfaI CTAG 4 cut(s) 101, 572, 737, 741
BfmI CTRYAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 977
BfuI GTATCC 1 cut(s) 813
BisI GCNGC 2 cut(s) 877, 889
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 2 cut(s) 878, 890
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 4 cut(s) 53, 505, 620, 893
Bme18I GGWCC 3 cut(s) 41, 622, 770
BmeRI GACNNNNNGTC 1 cut(s) 265
BmgT120I GGNCC 4 cut(s) 36, 41, 622, 770
BmiI GGNNCC 5 cut(s) 37, 43, 370, 771, 823
BmrFI CCNGG 4 cut(s) 53, 505, 620, 893
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 3 cut(s) 919, 1035, 1096
BmtI GCTAGC 1 cut(s) 744
BmuI ACTGGG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 2 cut(s) 516, 613
BpuEI CTTGAG 1 cut(s) 619
BpuMI CCSGG 2 cut(s) 505, 620
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 990
BsaJI CCNNGG 3 cut(s) 57, 586, 657
BsaWI WCCGGW 2 cut(s) 442, 947
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 129, 339, 767
Bse118I RCCGGY 3 cut(s) 38, 75, 862
Bse1I ACTGG 3 cut(s) 238, 247, 421
Bse8I GATNNNNATC 1 cut(s) 990
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 2 cut(s) 53, 893
BseDI CCNNGG 3 cut(s) 57, 586, 657
BseGI GGATG 4 cut(s) 71, 648, 1026, 1111
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 4 cut(s) 58, 129, 339, 767
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 238, 247, 421
BseRI GAGGAG 1 cut(s) 398
BseSI GKGCMC 1 cut(s) 231
BseX3I CGGCCG 2 cut(s) 60, 864
BseXI GCAGC 1 cut(s) 888
BseYI CCCAGC 1 cut(s) 545
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 3 cut(s) 63, 151, 867
BshFI GGCC 9 cut(s) 38, 51, 56, 62, 656, 760, 809, 866, 891
BshNI GGYRCC 1 cut(s) 821
BsiEI CGRYCG 3 cut(s) 63, 151, 867
BslFI GGGAC 3 cut(s) 27, 253, 1083
BslI CCNNNNNNNGG 4 cut(s) 58, 129, 339, 767
BsmAI GTCTC 2 cut(s) 158, 334
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 3 cut(s) 27, 253, 1083
BsnI GGCC 9 cut(s) 38, 51, 56, 62, 656, 760, 809, 866, 891
Bsp119I TTCGAA 2 cut(s) 516, 613
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
Bsp1720I GCTNAGC 1 cut(s) 713
Bsp19I CCATGG 1 cut(s) 586
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 1 cut(s) 888
BspANI GGCC 9 cut(s) 38, 51, 56, 62, 656, 760, 809, 866, 891
BspCNI CTCAG 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 5 cut(s) 37, 43, 370, 771, 823
BspMAI CTGCAG 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 744
BspPI GGATC 2 cut(s) 79, 1102
BspT104I TTCGAA 2 cut(s) 516, 613
BspT107I GGYRCC 1 cut(s) 821
BspTI CTTAAG 1 cut(s) 977
BsrFI RCCGGY 3 cut(s) 38, 75, 862
BsrGI TGTACA 1 cut(s) 291
BsrI ACTGG 3 cut(s) 238, 247, 421
BssAI RCCGGY 3 cut(s) 38, 75, 862
BssECI CCNNGG 3 cut(s) 57, 586, 657
BssMI GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
BssNAI GTATAC 1 cut(s) 438
BssT1I CCWWGG 2 cut(s) 586, 657
Bst1107I GTATAC 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 53, 893
Bst4CI ACNGT 2 cut(s) 116, 346
Bst6I CTCTTC 1 cut(s) 1075
BstAFI CTTAAG 1 cut(s) 977
BstAUI TGTACA 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 226
BstBI TTCGAA 2 cut(s) 516, 613
BstC8I GCNNGC 5 cut(s) 77, 81, 719, 742, 864
BstDEI CTNAG 4 cut(s) 71, 253, 713, 1098
BstDSI CCRYGG 2 cut(s) 57, 586
BstF5I GGATG 4 cut(s) 71, 648, 1026, 1111
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 7 cut(s) 27, 87, 151, 325, 837, 962, 1097
BstMAI GTCTC 2 cut(s) 158, 334
BstMBI GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
BstMCI CGRYCG 3 cut(s) 63, 151, 867
BstMWI GCNNNNNNNGC 3 cut(s) 709, 718, 885
BstNI CCWGG 2 cut(s) 53, 893
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 4 cut(s) 51, 503, 618, 891
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 888
BstX2I RGATCY 1 cut(s) 1094
BstYI RGATCY 1 cut(s) 1094
BstZ17I GTATAC 1 cut(s) 438
BstZI CGGCCG 2 cut(s) 60, 864
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 9 cut(s) 38, 51, 56, 62, 656, 760, 809, 866, 891
BtgI CCRYGG 2 cut(s) 57, 586
BtsCI GGATG 4 cut(s) 71, 648, 1026, 1111
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 5 cut(s) 77, 81, 719, 742, 864
Cfr10I RCCGGY 3 cut(s) 38, 75, 862
Cfr13I GGNCC 4 cut(s) 36, 41, 622, 770
Csp6I GTAC 4 cut(s) 250, 292, 793, 945
CviAII CATG 4 cut(s) 196, 559, 587, 688
CviQI GTAC 4 cut(s) 250, 292, 793, 945
DdeI CTNAG 4 cut(s) 71, 253, 713, 1098
DpnI GATC 7 cut(s) 26, 86, 150, 324, 836, 961, 1096
DpnII GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
DraI TTTAAA 1 cut(s) 999
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 5 cut(s) 54, 60, 807, 864, 889
EagI CGGCCG 2 cut(s) 60, 864
Eam1104I CTCTTC 1 cut(s) 1075
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 1075
EclXI CGGCCG 2 cut(s) 60, 864
Eco130I CCWWGG 2 cut(s) 586, 657
Eco32I GATATC 1 cut(s) 1129
Eco47I GGWCC 3 cut(s) 41, 622, 770
Eco52I CGGCCG 2 cut(s) 60, 864
Eco57I CTGAAG 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 770
EcoRI GAATTC 2 cut(s) 550, 1011
EcoRII CCWGG 2 cut(s) 51, 891
EcoRV GATATC 1 cut(s) 1129
EcoT14I CCWWGG 2 cut(s) 586, 657
ErhI CCWWGG 2 cut(s) 586, 657
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 4 cut(s) 199, 562, 590, 691
FaqI GGGAC 3 cut(s) 27, 253, 1083
FatI CATG 4 cut(s) 195, 558, 586, 687
FbaI TGATCA 2 cut(s) 24, 322
FblI GTMKAC 2 cut(s) 437, 726
Fnu4HI GCNGC 2 cut(s) 877, 889
FokI GGATG 4 cut(s) 78, 655, 1013, 1118
Fsp4HI GCNGC 2 cut(s) 877, 889
FspBI CTAG 4 cut(s) 101, 572, 737, 741
GluI GCNGC 2 cut(s) 877, 889
GsaI CCCAGC 1 cut(s) 549
HaeIII GGCC 9 cut(s) 38, 51, 56, 62, 656, 760, 809, 866, 891
Hin1II CATG 4 cut(s) 199, 562, 590, 691
HinfI GANTC 4 cut(s) 308, 695, 850, 951
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 3 cut(s) 438, 649, 727
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 4 cut(s) 82, 443, 955, 1077
Hpy8I GTNNAC 3 cut(s) 438, 649, 727
Hpy99I CGWCG 1 cut(s) 967
HpyAV CCTTC 7 cut(s) 176, 343, 446, 502, 520, 778, 1036
HpyCH4III ACNGT 2 cut(s) 116, 346
HpyCH4IV ACGT 2 cut(s) 225, 816
HpyCH4V TGCA 3 cut(s) 4, 314, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 709, 718, 885
HpyF3I CTNAG 4 cut(s) 71, 253, 713, 1098
HpySE526I ACGT 2 cut(s) 225, 816
Hsp92II CATG 4 cut(s) 199, 562, 590, 691
Kpn2I TCCGGA 1 cut(s) 442
KroI GCCGGC 2 cut(s) 75, 862
KroNI GCCGGC 2 cut(s) 77, 864
Ksp22I TGATCA 2 cut(s) 24, 322
Kzo9I GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
Lsp1109I GCAGC 1 cut(s) 888
LweI GCATC 3 cut(s) 919, 1035, 1096
MaeI CTAG 4 cut(s) 101, 572, 737, 741
MaeII ACGT 2 cut(s) 225, 816
MalI GATC 7 cut(s) 26, 86, 150, 324, 836, 961, 1096
MboI GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
MboII GAAGA 4 cut(s) 145, 473, 1016, 1092
MflI RGATCY 1 cut(s) 1094
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 3 cut(s) 550, 967, 1011
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 56
MroI TCCGGA 1 cut(s) 442
MroNI GCCGGC 2 cut(s) 75, 862
MroXI GAANNNNTTC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 56
MseI TTAA 4 cut(s) 468, 683, 978, 998
MslI CAYNNNNRTG 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 977
MspR9I CCNGG 4 cut(s) 53, 505, 620, 893
MvaI CCWGG 2 cut(s) 53, 893
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 709, 718, 885
NaeI GCCGGC 2 cut(s) 77, 864
NciI CCSGG 2 cut(s) 505, 620
NcoI CCATGG 1 cut(s) 586
NdeII GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
NgoMIV GCCGGC 2 cut(s) 75, 862
NheI GCTAGC 1 cut(s) 740
NlaIII CATG 4 cut(s) 199, 562, 590, 691
NlaIV GGNNCC 5 cut(s) 37, 43, 370, 771, 823
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 2 cut(s) 516, 613
OliI CACNNNNGTG 1 cut(s) 224
PciI ACATGT 1 cut(s) 195
PdiI GCCGGC 2 cut(s) 77, 864
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 3 cut(s) 695, 850, 951
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 503
PkrI GCNGC 2 cut(s) 878, 890
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 770
PscI ACATGT 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 2 cut(s) 51, 891
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 2 cut(s) 51, 891
PspN4I GGNNCC 5 cut(s) 37, 43, 370, 771, 823
PspPI GGNCC 4 cut(s) 36, 41, 622, 770
PspPPI RGGWCCY 1 cut(s) 770
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 1094
PvuI CGATCG 1 cut(s) 151
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 4 cut(s) 251, 293, 794, 946
RsaNI GTAC 4 cut(s) 250, 292, 793, 945
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 4 cut(s) 468, 683, 978, 998
SatI GCNGC 2 cut(s) 877, 889
Sau3AI GATC 7 cut(s) 24, 84, 148, 322, 834, 959, 1094
Sau96I GGNCC 4 cut(s) 36, 41, 622, 770
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 4 cut(s) 53, 505, 620, 893
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 3 cut(s) 919, 1035, 1096
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 2 cut(s) 516, 613
SinI GGWCC 3 cut(s) 41, 622, 770
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 634, 977
SmoI CTYRAG 2 cut(s) 634, 977
Sse9I AATT 3 cut(s) 550, 967, 1011
SsiI CCGC 1 cut(s) 888
SspI AATATT 1 cut(s) 361
SspMI CTAG 4 cut(s) 101, 572, 737, 741
StyD4I CCNGG 4 cut(s) 51, 503, 618, 891
StyI CCWWGG 2 cut(s) 586, 657
TaaI ACNGT 2 cut(s) 116, 346
TaiI ACGT 2 cut(s) 228, 819
TaqI TCGA 6 cut(s) 516, 613, 829, 927, 962, 1076
TasI AATT 3 cut(s) 550, 967, 1011
TatI WGTACW 2 cut(s) 249, 291
TauI GCSGC 1 cut(s) 891
TfiI GAWTC 3 cut(s) 695, 850, 951
Tru1I TTAA 4 cut(s) 468, 683, 978, 998
Tru9I TTAA 4 cut(s) 468, 683, 978, 998
TseI GCWGC 1 cut(s) 876
TspDTI ATGAA 1 cut(s) 797
TspGWI ACGGA 3 cut(s) 744, 810, 924
Van91I CCANNNNNTGG 1 cut(s) 339
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 3 cut(s) 41, 622, 770
XapI RAATTY 3 cut(s) 550, 967, 1011
XceI RCATGY 1 cut(s) 199
XmiI GTMKAC 2 cut(s) 437, 726
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 4 cut(s) 101, 572, 737, 741
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.