Rh6BG186600

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001076
Physical Location & Seq
Reverse (-)
34316564 .. 34317436
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG186600.1

Sequence Viewer

Length: 873 bp
ATGCCCCACCTAAGAATTTCTCTCCTTATCCATCAAAGTCAGCAGCAGAACCACAAAAACAAAATATCTAAGAATTTCTCTCCTTATCCATCAAAGTCTTACCCACACCAACTGTTTCCTACTGCACCCTACTACCACACACCACCAAAAAATGCCATCTTTAGAATTAATCCCCACCTTGAATTAATCCCCACCTTGCTAAAACTGCACCCTACTACCACACACCACCAAAAAATGCCGGAAGCGGTGGTGATAATAGTTGGGGCGGGCCCGTCCGGCCTCGCCATGGCCGGCTGTCTCAGCCGGCTCGAAATCCCATACCTATTTCTCGAAAGAGAGGACTGTTATGCTCCTCTTTGGAAGAAGTACTCCTACGACCGTCTCCACCTTCACCTTCAGAAGCAGGTCTGTGAGCTCCCCCACATGTCATTCCCGTCCTCTTATCCCACGTATGTACCCAAAAAACAGTTCATTCAGTACTTGGATGACTACGTTGCACATTTCAAGATCAGTCTCATGTACCACAGAAATGTCGAGTCTGCAAGTTATGATCAGGGTTCTGAGAGATGGGTTGTGAAGACGATAAACAATGATGAGGGCTGTCGTGGTGAGGAGGAGGAATTTTTGGGAAGGTTTTTGGTGGTGGCTACTGGTGAAACAACAGATCCATATGTGCCAGAGATTGAAGGGTTGAGTAGTTTCAATGGGGAGGTTCTTCACTCGACCCGATTCAAATCCGGGGCTGAGTTCAAGAACAAGAATGTTTTGGTTGTCGGCTCTGGGAATTCCGGCCTGGAAATTGCTTTGGATCTGGCAAACCATGGTGCAAAGACTTCAATCATTGTTCGGAGCCCGGTAAATAGTCATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

290

Amino Acids

32.94

Weight (kDa)

8.24

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 84 - 280 2.1e-17 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 84 - 284 6e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 85 - 285 4.8e-25 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 149 - 280 2.1e-15 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
AciI CCGC 2 cut(s) 245, 266
AclWI GGATC 2 cut(s) 659, 816
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 4 cut(s) 15, 73, 620, 784
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 4 cut(s) 368, 456, 479, 521
AfiI CCNNNNNNNGG 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 7 cut(s) 182, 505, 686, 703, 733, 751, 837
AjnI CCWGG 1 cut(s) 792
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 3 cut(s) 302, 386, 518
AlwI GGATC 2 cut(s) 659, 816
AoxI GGCC 4 cut(s) 268, 277, 288, 790
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 4 cut(s) 15, 73, 620, 784
AseI ATTAAT 2 cut(s) 168, 185
AspS9I GGNCC 2 cut(s) 268, 269
AsuC2I CCSGG 2 cut(s) 739, 854
AsuHPI GGTGA 4 cut(s) 262, 383, 620, 665
BaeGI GKGCMC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 438, 471
BanII GRGCYC 3 cut(s) 272, 417, 854
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BbsI GAAGAC 1 cut(s) 584
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 55
BccI CCATC 4 cut(s) 39, 97, 164, 561
BciT130I CCWGG 1 cut(s) 794
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 2 cut(s) 739, 854
BcoDI GTCTC 3 cut(s) 302, 386, 518
BfuAI ACCTGC 1 cut(s) 394
BglI GCCNNNNNGGC 1 cut(s) 276
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmcAI AGTACT 2 cut(s) 368, 479
Bme1390I CCNGG 3 cut(s) 739, 794, 854
BmgT120I GGNCC 2 cut(s) 268, 269
BmiI GGNNCC 2 cut(s) 270, 851
BmrFI CCNGG 3 cut(s) 739, 794, 854
BpiI GAAGAC 1 cut(s) 584
BpuMI CCSGG 2 cut(s) 739, 854
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 285, 738, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 2 cut(s) 290, 303
Bse1I ACTGG 1 cut(s) 655
Bse8I GATNNNNATC 1 cut(s) 733
BseBI CCWGG 1 cut(s) 794
BseDI CCNNGG 3 cut(s) 285, 738, 820
BseGI GGATG 1 cut(s) 490
BseJI GATNNNNATC 1 cut(s) 733
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 3 cut(s) 313, 552, 735
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 3 cut(s) 342, 626, 629
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 55
BsgI GTGCAG 2 cut(s) 108, 191
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 4 cut(s) 270, 279, 290, 792
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 7 cut(s) 239, 276, 291, 304, 738, 789, 854
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 3 cut(s) 302, 386, 518
BsmBI CGTCTC 1 cut(s) 386
BsnI GGCC 4 cut(s) 270, 279, 290, 792
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 272, 417, 854
Bsp143I GATC 4 cut(s) 507, 550, 664, 808
Bsp19I CCATGG 2 cut(s) 285, 820
BspACI CCGC 2 cut(s) 245, 266
BspANI GGCC 4 cut(s) 270, 279, 290, 792
BspCNI CTCAG 3 cut(s) 312, 553, 736
BspLI GGNNCC 2 cut(s) 270, 851
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 2 cut(s) 659, 816
BsrFI RCCGGY 2 cut(s) 290, 303
BsrI ACTGG 1 cut(s) 655
BssAI RCCGGY 2 cut(s) 290, 303
BssECI CCNNGG 3 cut(s) 285, 738, 820
BssMI GATC 4 cut(s) 507, 550, 664, 808
BssT1I CCWWGG 2 cut(s) 285, 820
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 4 cut(s) 114, 344, 380, 468
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 268, 292, 305
BstDEI CTNAG 5 cut(s) 11, 69, 299, 561, 744
BstDSI CCRYGG 2 cut(s) 285, 820
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 4 cut(s) 510, 553, 667, 811
BstMAI GTCTC 3 cut(s) 302, 386, 518
BstMBI GATC 4 cut(s) 507, 550, 664, 808
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 3 cut(s) 205, 276, 300
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 737, 792, 852
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 2 cut(s) 664, 808
BstYI RGATCY 2 cut(s) 664, 808
BsuRI GGCC 4 cut(s) 270, 279, 290, 792
BtgI CCRYGG 2 cut(s) 285, 820
BtsCI GGATG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 3 cut(s) 268, 292, 305
Cfr10I RCCGGY 2 cut(s) 290, 303
Cfr13I GGNCC 2 cut(s) 268, 269
Csp6I GTAC 4 cut(s) 367, 455, 478, 520
CviAII CATG 4 cut(s) 286, 424, 517, 821
CviQI GTAC 4 cut(s) 367, 455, 478, 520
DdeI CTNAG 5 cut(s) 11, 69, 299, 561, 744
DpnI GATC 4 cut(s) 509, 552, 666, 810
DpnII GATC 4 cut(s) 507, 550, 664, 808
EaeI YGGCCR 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 285, 820
Eco24I GRGCYC 3 cut(s) 272, 417, 854
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 792
EcoT14I CCWWGG 2 cut(s) 285, 820
EcoT38I GRGCYC 3 cut(s) 272, 417, 854
ErhI CCWWGG 2 cut(s) 285, 820
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 4 cut(s) 289, 427, 520, 824
FatI CATG 4 cut(s) 285, 423, 516, 820
FauI CCCGC 1 cut(s) 259
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 3 cut(s) 272, 417, 854
Fsp4HI GCNGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 44
HaeIII GGCC 4 cut(s) 270, 279, 290, 792
HapII CCGG 7 cut(s) 239, 276, 291, 304, 738, 789, 854
Hin1II CATG 4 cut(s) 289, 427, 520, 824
HinfI GANTC 2 cut(s) 536, 729
HpaII CCGG 7 cut(s) 239, 276, 291, 304, 738, 789, 854
HphI GGTGA 4 cut(s) 262, 383, 620, 665
Hpy188I TCNGA 4 cut(s) 399, 562, 849, 872
Hpy188III TCNNGA 3 cut(s) 329, 505, 751
HpyAV CCTTC 4 cut(s) 398, 404, 624, 680
HpyCH4III ACNGT 4 cut(s) 114, 344, 380, 468
HpyCH4IV ACGT 2 cut(s) 449, 492
HpyCH4V TGCA 5 cut(s) 125, 208, 497, 542, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 276, 300
HpyF3I CTNAG 5 cut(s) 11, 69, 299, 561, 744
HpySE526I ACGT 2 cut(s) 449, 492
Hsp92II CATG 4 cut(s) 289, 427, 520, 824
KroI GCCGGC 2 cut(s) 290, 303
KroNI GCCGGC 2 cut(s) 292, 305
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 507, 550, 664, 808
LmnI GCTCC 3 cut(s) 355, 420, 849
Lsp1109I GCAGC 1 cut(s) 55
MaeII ACGT 2 cut(s) 449, 492
MalI GATC 4 cut(s) 509, 552, 666, 810
MboI GATC 4 cut(s) 507, 550, 664, 808
MboII GAAGA 3 cut(s) 373, 589, 707
MflI RGATCY 2 cut(s) 664, 808
MhlI GDGCHC 3 cut(s) 272, 417, 854
MluCI AATT 7 cut(s) 15, 73, 165, 182, 620, 784, 798
MlyI GAGTC 1 cut(s) 545
MnlI CCTC 9 cut(s) 290, 331, 363, 448, 589, 604, 607, 610, 703
MroNI GCCGGC 2 cut(s) 290, 303
MseI TTAA 2 cut(s) 168, 185
MslI CAYNNNNRTG 1 cut(s) 528
MspI CCGG 7 cut(s) 239, 276, 291, 304, 738, 789, 854
MspR9I CCNGG 3 cut(s) 739, 794, 854
MvaI CCWGG 1 cut(s) 794
MwoI GCNNNNNNNGC 3 cut(s) 205, 276, 300
NaeI GCCGGC 2 cut(s) 292, 305
NciI CCSGG 2 cut(s) 739, 854
NcoI CCATGG 2 cut(s) 285, 820
NdeI CATATG 1 cut(s) 670
NdeII GATC 4 cut(s) 507, 550, 664, 808
NgoMIV GCCGGC 2 cut(s) 290, 303
NlaIII CATG 4 cut(s) 289, 427, 520, 824
NlaIV GGNNCC 2 cut(s) 270, 851
NspI RCATGY 1 cut(s) 427
PciI ACATGT 1 cut(s) 423
PdiI GCCGGC 2 cut(s) 292, 305
PfeI GAWTC 1 cut(s) 729
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
Ppu21I YACGTR 1 cut(s) 450
PscI ACATGT 1 cut(s) 423
PshBI ATTAAT 2 cut(s) 168, 185
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 2 cut(s) 270, 851
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 2 cut(s) 268, 269
PsuI RGATCY 2 cut(s) 664, 808
RsaI GTAC 4 cut(s) 368, 456, 479, 521
RsaNI GTAC 4 cut(s) 367, 455, 478, 520
RseI CAYNNNNRTG 1 cut(s) 528
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 168, 185
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 4 cut(s) 507, 550, 664, 808
Sau96I GGNCC 2 cut(s) 268, 269
ScaI AGTACT 2 cut(s) 368, 479
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 3 cut(s) 739, 794, 854
SduI GDGCHC 3 cut(s) 272, 417, 854
SfiI GGCCNNNNNGGCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 528
Sse9I AATT 7 cut(s) 15, 73, 165, 182, 620, 784, 798
SsiI CCGC 2 cut(s) 245, 266
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 737, 792, 852
StyI CCWWGG 2 cut(s) 285, 820
TaaI ACNGT 4 cut(s) 114, 344, 380, 468
TaiI ACGT 2 cut(s) 452, 495
TaqI TCGA 4 cut(s) 309, 330, 534, 722
TasI AATT 7 cut(s) 15, 73, 165, 182, 620, 784, 798
TatI WGTACW 2 cut(s) 366, 477
TfiI GAWTC 1 cut(s) 729
Tru1I TTAA 2 cut(s) 168, 185
Tru9I TTAA 2 cut(s) 168, 185
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 460
VspI ATTAAT 2 cut(s) 168, 185
XapI RAATTY 4 cut(s) 15, 73, 620, 784
XceI RCATGY 1 cut(s) 427
ZrmI AGTACT 2 cut(s) 368, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.