Rh6AG341300

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001076
Physical Location & Seq
Reverse (-)
54049370 .. 54050832
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG341300.1

Sequence Viewer

Length: 1146 bp
ATGCCGGAAGCGGTGGTGATAATAGTCGGGGCTGGCCCGTCCGGCCTTGCCGTGGCTGGCTGTCTCAGCCGGCTCGAAATCCCATACCTACTTCTCGAAAGAGAGGACTGTTTTGCTTCTCTTTGGAAGAAGTACTCCTACGACCGTCTCCACCTTCACCTTCAGAAGCAGTTCTGTGAGCTCCCCCACATGTCATTCCCGTCCTCTTGTCCCACGTATCTACCCAAAAAACAGTACATTCAGTACTTGGATGACTACGTTGCACATTTCAAGATCACTCCCGTGTACCAGAGAAATGTCGAGTCTGCAAGTTATGATCAGGATTCTGAGAGATGGGTTGTGAAGACGATGAACAAGGTGGAGGGCTGTGGTGGTGAGGAGGAGGAGTTTTTGGGAAGGTTTTTGGTGGTGGCTTCTGGTGAAACAACAAATCCATATGTGCCAGAGATTGAAGGGTTGAGTAGTTTTGATGGGGAGGTTCTTCACTCGACCCGATTCAAATCCGGGGTTGAGTTCAAGAACAAGAATGTTTTGGTTGTCGGCTCTGGGAATTCGGGCATGGAAATTGCTTTGGATCTGGCAAACCATGGTGCAAAGACTTCAATCATTGTTCGAAGCCCGGTTCATTTTTTGTCAAGGAGGATGGTATACTTGGCCTTGGTTTTGTTGAGATATCTTTCATTAAGCAAAGTGGATTCTTTGATGGTTTTGCTTAGCAAGCTGGTTTATGGAGACCTGACCAAGTATGGGATAGCCAGGCCAAAAGAGGGCCCTTTCTTTATGAAGATCAAGTACGGCAAGTATCCGGCCATTGATGTCGGCACCTGTAGTAAGATCAAGTCCGGCGAGATTCAGGTTTTACCCGCAGAAATAGGCAGCATAAGAGGAAACCATGTGGAACTCAAAAATGGGAAGTCATACCAGTTTGAGTCCATCGTTTTCTGCACCGGATTCAAGAGATCAACAAGTTTGTGGCTCAAGGGGGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACCAAGTTTTCCAAACCATTGGAAAGGACAGAAGGGTTTGTATTGTGTGGGACTATCAAGAAGAGGACTATACGGATCTAGGGAGGATGCTCAAAACATAGCCAATGATATCAAGTCGCCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

381

Amino Acids

42.69

Weight (kDa)

8.7

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 6 - 214 1.7e-17 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 6 - 207 1.2e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 207 2e-24 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 72 - 202 8.7e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 821
AccI GTMKAC 1 cut(s) 648
AciI CCGC 2 cut(s) 11, 864
AclWI GGATC 2 cut(s) 582, 1102
AcoI YGGCCR 1 cut(s) 807
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 5 cut(s) 134, 236, 245, 287, 794
AfiI CCNNNNNNNGG 3 cut(s) 52, 747, 767
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 7 cut(s) 271, 452, 499, 517, 603, 955, 1000
AjnI CCWGG 1 cut(s) 755
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 2 cut(s) 181, 721
AluI AGCT 2 cut(s) 181, 721
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 68, 152, 726
AlwI GGATC 2 cut(s) 582, 1102
AoxI GGCC 6 cut(s) 34, 43, 654, 758, 769, 807
ApaI GGGCCC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 876
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 35, 769, 770
AsuC2I CCSGG 2 cut(s) 505, 620
AsuHPI GGTGA 4 cut(s) 28, 149, 386, 431
AsuII TTCGAA 1 cut(s) 613
BaeGI GKGCMC 1 cut(s) 773
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 2 cut(s) 183, 773
BarI GAAGNNNNNNTAC 4 cut(s) 122, 154, 776, 808
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 888
BccI CCATC 6 cut(s) 327, 464, 637, 697, 941, 1001
BceAI ACGGC 2 cut(s) 35, 811
BciT130I CCWGG 1 cut(s) 757
BciVI GTATCC 1 cut(s) 813
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 2 cut(s) 505, 620
BcoDI GTCTC 3 cut(s) 68, 152, 726
BfaI CTAG 1 cut(s) 1098
BfmI CTRYAG 1 cut(s) 826
BfuI GTATCC 1 cut(s) 813
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 1 cut(s) 877
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 1 cut(s) 878
BmcAI AGTACT 2 cut(s) 134, 245
Bme1390I CCNGG 3 cut(s) 505, 620, 757
BmgT120I GGNCC 3 cut(s) 35, 769, 770
BmiI GGNNCC 2 cut(s) 771, 823
BmrFI CCNGG 3 cut(s) 505, 620, 757
BmsI GCATC 1 cut(s) 1096
BpiI GAAGAC 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 2 cut(s) 505, 620
BsaAI YACGTR 1 cut(s) 216
BsaBI GATNNNNATC 2 cut(s) 499, 990
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 4 cut(s) 51, 504, 586, 657
BsaWI WCCGGW 1 cut(s) 947
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 747, 767
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 922
Bse8I GATNNNNATC 2 cut(s) 499, 990
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 4 cut(s) 51, 504, 586, 657
BseGI GGATG 4 cut(s) 256, 648, 991, 1111
BseJI GATNNNNATC 2 cut(s) 499, 990
BseLI CCNNNNNNNGG 3 cut(s) 52, 747, 767
BseMII CTCAG 2 cut(s) 79, 318
BseNI ACTGG 1 cut(s) 922
BseRI GAGGAG 3 cut(s) 392, 395, 398
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 1 cut(s) 888
BsgI GTGCAG 1 cut(s) 928
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 6 cut(s) 36, 45, 656, 760, 771, 809
BshNI GGYRCC 1 cut(s) 821
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 8 cut(s) 5, 42, 70, 504, 620, 806, 843, 948
BslFI GGGAC 2 cut(s) 195, 1083
BslI CCNNNNNNNGG 3 cut(s) 52, 747, 767
BsmAI GTCTC 3 cut(s) 68, 152, 726
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 195, 1083
BsnI GGCC 6 cut(s) 36, 45, 656, 760, 771, 809
Bso31I GGTCTC 1 cut(s) 726
Bsp119I TTCGAA 1 cut(s) 613
Bsp120I GGGCCC 1 cut(s) 769
Bsp1286I GDGCHC 2 cut(s) 183, 773
Bsp143I GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
Bsp1720I GCTNAGC 1 cut(s) 713
Bsp19I CCATGG 1 cut(s) 586
BspACI CCGC 2 cut(s) 11, 864
BspANI GGCC 6 cut(s) 36, 45, 656, 760, 771, 809
BspCNI CTCAG 2 cut(s) 78, 319
BspLI GGNNCC 2 cut(s) 771, 823
BspPI GGATC 2 cut(s) 582, 1102
BspT104I TTCGAA 1 cut(s) 613
BspT107I GGYRCC 1 cut(s) 821
BspTNI GGTCTC 1 cut(s) 726
BsrFI RCCGGY 1 cut(s) 69
BsrI ACTGG 1 cut(s) 922
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 4 cut(s) 51, 504, 586, 657
BssMI GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
BssNAI GTATAC 1 cut(s) 649
BssT1I CCWWGG 2 cut(s) 586, 657
Bst1107I GTATAC 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 3 cut(s) 110, 146, 234
Bst6I CTCTTC 1 cut(s) 1075
BstBAI YACGTR 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 4 cut(s) 34, 58, 71, 719
BstDEI CTNAG 3 cut(s) 65, 327, 713
BstDSI CCRYGG 2 cut(s) 51, 586
BstF5I GGATG 4 cut(s) 256, 648, 991, 1111
BstKTI GATC 7 cut(s) 276, 319, 577, 789, 837, 962, 1097
BstMAI GTCTC 3 cut(s) 68, 152, 726
BstMBI GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 42, 66, 718
BstNI CCWGG 1 cut(s) 757
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 3 cut(s) 503, 618, 755
BstSFI CTRYAG 1 cut(s) 826
BstSLI GKGCMC 1 cut(s) 773
BstV1I GCAGC 1 cut(s) 888
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 574, 1094
BstXI CCANNNNNNTGG 1 cut(s) 1038
BstYI RGATCY 2 cut(s) 574, 1094
BstZ17I GTATAC 1 cut(s) 649
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 6 cut(s) 36, 45, 656, 760, 771, 809
BtgI CCRYGG 2 cut(s) 51, 586
BtsCI GGATG 4 cut(s) 256, 648, 991, 1111
Cac8I GCNNGC 4 cut(s) 34, 58, 71, 719
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 35, 769, 770
Csp6I GTAC 5 cut(s) 133, 235, 244, 286, 793
CviAII CATG 4 cut(s) 190, 559, 587, 893
CviQI GTAC 5 cut(s) 133, 235, 244, 286, 793
DdeI CTNAG 3 cut(s) 65, 327, 713
DpnI GATC 7 cut(s) 275, 318, 576, 788, 836, 961, 1096
DpnII GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
EaeI YGGCCR 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 1075
EarI CTCTTC 1 cut(s) 1075
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 586, 657
Eco24I GRGCYC 2 cut(s) 183, 773
Eco31I GGTCTC 1 cut(s) 726
Eco32I GATATC 2 cut(s) 674, 1129
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 2 cut(s) 769, 770
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 755
EcoRV GATATC 2 cut(s) 674, 1129
EcoT14I CCWWGG 2 cut(s) 586, 657
EcoT38I GRGCYC 2 cut(s) 183, 773
ErhI CCWWGG 2 cut(s) 586, 657
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 4 cut(s) 193, 562, 590, 896
FaqI GGGAC 2 cut(s) 195, 1083
FatI CATG 4 cut(s) 189, 558, 586, 892
FauI CCCGC 1 cut(s) 871
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 1 cut(s) 877
FokI GGATG 4 cut(s) 263, 655, 998, 1118
FriOI GRGCYC 2 cut(s) 183, 773
Fsp4HI GCNGC 1 cut(s) 877
FspBI CTAG 1 cut(s) 1098
GluI GCNGC 1 cut(s) 877
HaeIII GGCC 6 cut(s) 36, 45, 656, 760, 771, 809
HapII CCGG 8 cut(s) 5, 42, 70, 504, 620, 806, 843, 948
Hin1II CATG 4 cut(s) 193, 562, 590, 896
HinfI GANTC 8 cut(s) 302, 323, 495, 695, 850, 929, 951, 1012
HpaII CCGG 8 cut(s) 5, 42, 70, 504, 620, 806, 843, 948
HphI GGTGA 4 cut(s) 28, 149, 386, 431
Hpy166II GTNNAC 2 cut(s) 286, 649
Hpy188I TCNGA 2 cut(s) 165, 328
Hpy188III TCNNGA 6 cut(s) 95, 271, 320, 517, 955, 1077
Hpy8I GTNNAC 2 cut(s) 286, 649
HpyAV CCTTC 5 cut(s) 164, 170, 390, 446, 1045
HpyCH4III ACNGT 3 cut(s) 110, 146, 234
HpyCH4IV ACGT 2 cut(s) 215, 258
HpyCH4V TGCA 4 cut(s) 263, 308, 593, 945
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 66, 718
HpyF3I CTNAG 3 cut(s) 65, 327, 713
HpySE526I ACGT 2 cut(s) 215, 258
Hsp92II CATG 4 cut(s) 193, 562, 590, 896
KroI GCCGGC 1 cut(s) 69
KroNI GCCGGC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 1 cut(s) 888
LweI GCATC 1 cut(s) 1096
MaeI CTAG 1 cut(s) 1098
MaeII ACGT 2 cut(s) 215, 258
MalI GATC 7 cut(s) 275, 318, 576, 788, 836, 961, 1096
MboI GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
MboII GAAGA 6 cut(s) 139, 355, 473, 796, 1016, 1092
MflI RGATCY 2 cut(s) 574, 1094
MhlI GDGCHC 2 cut(s) 183, 773
MluCI AATT 2 cut(s) 550, 564
MlyI GAGTC 2 cut(s) 311, 938
MroNI GCCGGC 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 8 cut(s) 5, 42, 70, 504, 620, 806, 843, 948
MspR9I CCNGG 3 cut(s) 505, 620, 757
MvaI CCWGG 1 cut(s) 757
MwoI GCNNNNNNNGC 3 cut(s) 42, 66, 718
NaeI GCCGGC 1 cut(s) 71
NciI CCSGG 2 cut(s) 505, 620
NcoI CCATGG 1 cut(s) 586
NdeI CATATG 1 cut(s) 436
NdeII GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
NgoMIV GCCGGC 1 cut(s) 69
NlaIII CATG 4 cut(s) 193, 562, 590, 896
NlaIV GGNNCC 2 cut(s) 771, 823
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 1 cut(s) 613
OliI CACNNNNGTG 1 cut(s) 281
PciI ACATGT 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 6 cut(s) 323, 495, 695, 850, 951, 1012
PkrI GCNGC 1 cut(s) 878
PleI GAGTC 2 cut(s) 310, 937
PpsI GAGTC 2 cut(s) 310, 937
Ppu21I YACGTR 1 cut(s) 216
PscI ACATGT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 755
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 2 cut(s) 771, 823
PspOMI GGGCCC 1 cut(s) 769
PspPI GGNCC 3 cut(s) 35, 769, 770
PsuI RGATCY 2 cut(s) 574, 1094
RsaI GTAC 5 cut(s) 134, 236, 245, 287, 794
RsaNI GTAC 5 cut(s) 133, 235, 244, 286, 793
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 1 cut(s) 877
Sau3AI GATC 7 cut(s) 273, 316, 574, 786, 834, 959, 1094
Sau96I GGNCC 3 cut(s) 35, 769, 770
ScaI AGTACT 2 cut(s) 134, 245
SchI GAGTC 2 cut(s) 311, 938
ScrFI CCNGG 3 cut(s) 505, 620, 757
SduI GDGCHC 2 cut(s) 183, 773
SfaNI GCATC 1 cut(s) 1096
SfcI CTRYAG 1 cut(s) 826
SfiI GGCCNNNNNGGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 613
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 2 cut(s) 550, 564
SsiI CCGC 2 cut(s) 11, 864
SspMI CTAG 1 cut(s) 1098
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 503, 618, 755
StyI CCWWGG 2 cut(s) 586, 657
TaaI ACNGT 3 cut(s) 110, 146, 234
TaiI ACGT 2 cut(s) 218, 261
TaqI TCGA 5 cut(s) 75, 96, 300, 488, 613
TasI AATT 2 cut(s) 550, 564
TatI WGTACW 3 cut(s) 132, 234, 243
TfiI GAWTC 6 cut(s) 323, 495, 695, 850, 951, 1012
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TseI GCWGC 1 cut(s) 876
TspDTI ATGAA 4 cut(s) 365, 614, 669, 797
TspGWI ACGGA 1 cut(s) 1107
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 1098
ZrmI AGTACT 2 cut(s) 134, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.