RchiOBHm_Chr6g0283091

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001076
Physical Location & Seq
Reverse (-)
46305983 .. 46306602
620 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25381

Sequence Viewer

Length: 258 bp
ATGGAAATTGCTTTGGATCTGGCAAATGATGGTGCAAAGACTTCAATCACTGTTCAAAGCCCGGTTCATTTTTTGTCAAGAAGGATGGTTTATTTGGCCTTGGTTTTGTTAAGATATCTTTCATTTAGCAAAGTGGATTATTTGATGGTTTTGCTTAGCAAGCTGGTTTATGGAGACCTGACCCAAGTACGGGATACCCAGGCCAAAAGAGGGCCCTTTCTTTATGAAGATCAATTACAGCAAGTATCCGACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

85

Amino Acids

9.73

Weight (kDa)

6.71

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 24
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 189, 190, 210
AgsI TTSAA 2 cut(s) 45, 56
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 24
AoxI GGCC 3 cut(s) 96, 201, 212
ApaI GGGCCC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 212, 213
AsuC2I CCSGG 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BccI CCATC 3 cut(s) 23, 79, 139
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 2 cut(s) 187, 256
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 168
BfuI GTATCC 2 cut(s) 187, 256
BlpI GCTNAGC 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 62, 200
BmgT120I GGNCC 2 cut(s) 212, 213
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 62, 200
Bpu1102I GCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 99, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 190, 210
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 99, 198
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 3 cut(s) 189, 190, 210
BseSI GKGCMC 1 cut(s) 216
BshFI GGCC 3 cut(s) 98, 203, 214
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 189, 190, 210
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 3 cut(s) 98, 203, 214
Bso31I GGTCTC 1 cut(s) 168
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 16, 229
Bsp1720I GCTNAGC 1 cut(s) 155
BspANI GGCC 3 cut(s) 98, 203, 214
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 99, 198
BssMI GATC 2 cut(s) 16, 229
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 2 cut(s) 19, 232
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 16, 229
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 60, 198
BstSLI GKGCMC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuI GTATCC 2 cut(s) 187, 256
BsuRI GGCC 3 cut(s) 98, 203, 214
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 212, 213
Csp6I GTAC 1 cut(s) 188
CviJI RGCY 5 cut(s) 60, 98, 163, 203, 214
CviKI_1 RGCY 5 cut(s) 60, 98, 163, 203, 214
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 18, 231
DpnII GATC 2 cut(s) 16, 229
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 116
EcoO109I RGGNCCY 2 cut(s) 212, 213
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 99
FaiI YATR 2 cut(s) 171, 225
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 216
HaeIII GGCC 3 cut(s) 98, 203, 214
HapII CCGG 1 cut(s) 62
HpaII CCGG 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 155
Kzo9I GATC 2 cut(s) 16, 229
LpnPI CCDG 6 cut(s) 5, 75, 149, 185, 191, 212
MalI GATC 2 cut(s) 18, 231
MboI GATC 2 cut(s) 16, 229
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 6, 233
MnlI CCTC 1 cut(s) 203
MseI TTAA 1 cut(s) 110
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 62, 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 16, 229
NlaIV GGNNCC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 214
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 212, 213
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 2 cut(s) 16, 229
Sau96I GGNCC 2 cut(s) 212, 213
ScrFI CCNGG 2 cut(s) 62, 200
SduI GDGCHC 1 cut(s) 216
SetI ASST 2 cut(s) 165, 180
Sse9I AATT 2 cut(s) 6, 233
StyD4I CCNGG 2 cut(s) 60, 198
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 52
TasI AATT 2 cut(s) 6, 233
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 56, 111, 240
TspRI CASTG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.