Rh6DG172900

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001076
Physical Location & Seq
Forward (+)
30152103 .. 30173990
21888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG172900.1

Sequence Viewer

Length: 1002 bp
ATGTCATTCCCGTCCTCTTATCCCACTCCCGTGTACCACAGAAATGTCGAGTCTGCAAGTTATGATCAGGGTTCTGAGAGATGGGTTGTGAAGACGATAAACAATGATGAGGGCTGTCGTGGTGAGGAGGAGGAATTTTTGGCAAGGTTTTTGGTGGTGGCTACTGGTGAAACAACAGATCCATATGTGCCAGAGATTGAAGGGTTGAGTAGTTTCAATGGGGAGGTTCTTCACTCGACCCGATTCAAATCCGGGGCTGAGTTCAAGAACAAGAATGTTTTGGTTGTCGGCTCTGGGAATTCCGGCCTGGAAATTGCTTTGGATCTGGCAAACCATGGTGCAAAGACTTCAATCATTGTTCGGAGCCCGATTCATTTTTTGTCAAGGAGGATGATGTACTGGGCCGTGGTTTTGGTGAGATATCTATCATTAAGCAAAGTGGAATCTTTGATGGTTTTGCTTAGCAAGCTGGTCTATGGAGACATGACCAAGTATGGAATAGCCAGGCCAAAAGAGGGCCCTTTCTCTATGAAGATCAAGTACGGGAAGTATCCCATCATTGATGTCGGCACCTGTAGTAAGATCAAGTCCGGCGAGATTCAGGTTTTACCCGCAGAAATAGCTAGCATAAGAGGAAACGATGTGGAACTCAAAAATGGGAAGTCATACCAATTTGAGTCCATCGTTTTCTGCACAGGATTCAAGAGATCAACATGTTCGTGGCTCAAGGGGGATGATTATCTTTTGAAAGAAGATGGGATTCCAAGACAAAGTGTTCCAAACCATTGGAAAGGACAGAAAGGTTTGTATTGTGTTGGACTAGCAGGAAGAGGACTGTACGGATCTAGTGTGGAGGCTCAAAACACAGCCAATGATATCAAGTCGTCTCTCATTAATGGGGATGGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGGTTGCCCCTCCTCTGATGCTGGAGCACAGCTTGGATGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

333

Amino Acids

36.96

Weight (kDa)

8.73

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lys_Orn_oxgnase PF13434 12 - 118 4.8e-12 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Pyr_redox_2 PF07992 35 - 125 1.8e-10 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 41 - 124 4.7e-14 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 43 - 235 2.4e-13 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 996
AciI CCGC 1 cut(s) 612
AclWI GGATC 3 cut(s) 173, 330, 850
AcsI RAATTY 2 cut(s) 134, 298
AfaI GTAC 4 cut(s) 35, 398, 542, 839
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 7 cut(s) 200, 217, 247, 265, 351, 703, 748
AjnI CCWGG 2 cut(s) 306, 503
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 3 cut(s) 469, 623, 987
AluI AGCT 3 cut(s) 469, 623, 987
Alw21I GWGCWC 1 cut(s) 984
Alw26I GTCTC 2 cut(s) 474, 891
AlwI GGATC 3 cut(s) 173, 330, 850
AoxI GGCC 4 cut(s) 304, 402, 506, 517
ApaI GGGCCC 1 cut(s) 521
ApoI RAATTY 2 cut(s) 134, 298
AseI ATTAAT 1 cut(s) 894
AspS9I GGNCC 3 cut(s) 402, 517, 518
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 134, 179, 427
AsuNHI GCTAGC 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 2 cut(s) 368, 521
BarI GAAGNNNNNNTAC 2 cut(s) 524, 556
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 984
BccI CCATC 6 cut(s) 75, 445, 563, 689, 749, 896
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 2 cut(s) 308, 505
BciVI GTATCC 1 cut(s) 561
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 474, 891
BfaI CTAG 3 cut(s) 624, 821, 846
BfmI CTRYAG 1 cut(s) 574
BfuI GTATCC 1 cut(s) 561
BlpI GCTNAGC 1 cut(s) 461
Bme1390I CCNGG 3 cut(s) 253, 308, 505
BmgT120I GGNCC 3 cut(s) 402, 517, 518
BmiI GGNNCC 3 cut(s) 365, 519, 571
BmrFI CCNGG 3 cut(s) 253, 308, 505
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 2 cut(s) 896, 963
BmtI GCTAGC 1 cut(s) 627
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 98
BpmI CTGGAG 2 cut(s) 901, 998
Bpu1102I GCTNAGC 1 cut(s) 461
BpuEI CTTGAG 2 cut(s) 710, 946
BpuMI CCSGG 1 cut(s) 253
BsaBI GATNNNNATC 3 cut(s) 247, 424, 738
BsaJI CCNNGG 3 cut(s) 252, 334, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 2 cut(s) 169, 404
Bse8I GATNNNNATC 3 cut(s) 247, 424, 738
BseBI CCWGG 2 cut(s) 308, 505
BseDI CCNNGG 3 cut(s) 252, 334, 405
BseGI GGATG 5 cut(s) 396, 739, 907, 911, 997
BseJI GATNNNNATC 3 cut(s) 247, 424, 738
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 66, 249
BseNI ACTGG 2 cut(s) 169, 404
BseRI GAGGAG 3 cut(s) 140, 143, 957
BseSI GKGCMC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 676
BshFI GGCC 4 cut(s) 306, 404, 508, 519
BshNI GGYRCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 984
BsiSI CCGG 3 cut(s) 252, 303, 591
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 474, 891
BsmBI CGTCTC 1 cut(s) 891
BsnI GGCC 4 cut(s) 306, 404, 508, 519
Bsp120I GGGCCC 1 cut(s) 517
Bsp1286I GDGCHC 3 cut(s) 368, 521, 984
Bsp143I GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
Bsp1720I GCTNAGC 1 cut(s) 461
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 612
BspANI GGCC 4 cut(s) 306, 404, 508, 519
BspCNI CTCAG 2 cut(s) 67, 250
BspLI GGNNCC 3 cut(s) 365, 519, 571
BspOI GCTAGC 1 cut(s) 627
BspPI GGATC 3 cut(s) 173, 330, 850
BspT107I GGYRCC 1 cut(s) 569
BsrI ACTGG 2 cut(s) 169, 404
BssECI CCNNGG 3 cut(s) 252, 334, 405
BssMI GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 2 cut(s) 308, 505
Bst4CI ACNGT 1 cut(s) 837
Bst6I CTCTTC 1 cut(s) 823
BstC8I GCNNGC 2 cut(s) 467, 625
BstDEI CTNAG 3 cut(s) 75, 258, 461
BstDSI CCRYGG 2 cut(s) 334, 405
BstF5I GGATG 5 cut(s) 396, 739, 907, 911, 997
BstKTI GATC 7 cut(s) 67, 181, 325, 537, 585, 710, 845
BstMAI GTCTC 2 cut(s) 474, 891
BstMBI GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
BstMWI GCNNNNNNNGC 2 cut(s) 466, 620
BstNI CCWGG 2 cut(s) 308, 505
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 3 cut(s) 251, 306, 503
BstSFI CTRYAG 1 cut(s) 574
BstSLI GKGCMC 1 cut(s) 521
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 3 cut(s) 178, 322, 842
BstXI CCANNNNNNTGG 1 cut(s) 786
BstYI RGATCY 3 cut(s) 178, 322, 842
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 4 cut(s) 306, 404, 508, 519
BtgI CCRYGG 2 cut(s) 334, 405
BtsCI GGATG 5 cut(s) 396, 739, 907, 911, 997
Cac8I GCNNGC 2 cut(s) 467, 625
Cfr13I GGNCC 3 cut(s) 402, 517, 518
Csp6I GTAC 4 cut(s) 34, 397, 541, 838
CviAII CATG 3 cut(s) 335, 484, 714
CviQI GTAC 4 cut(s) 34, 397, 541, 838
DdeI CTNAG 3 cut(s) 75, 258, 461
DpnI GATC 7 cut(s) 66, 180, 324, 536, 584, 709, 844
DpnII GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
Eam1104I CTCTTC 1 cut(s) 823
EarI CTCTTC 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 368, 521
Eco32I GATATC 2 cut(s) 422, 877
EcoO109I RGGNCCY 2 cut(s) 517, 518
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 306, 503
EcoRV GATATC 2 cut(s) 422, 877
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 368, 521
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 891
FaeI CATG 3 cut(s) 338, 487, 717
FatI CATG 3 cut(s) 334, 483, 713
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 184
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 996
FokI GGATG 4 cut(s) 403, 746, 914, 918
FriOI GRGCYC 2 cut(s) 368, 521
FspBI CTAG 3 cut(s) 624, 821, 846
GsuI CTGGAG 2 cut(s) 901, 998
HaeIII GGCC 4 cut(s) 306, 404, 508, 519
HapII CCGG 3 cut(s) 252, 303, 591
Hin1II CATG 3 cut(s) 338, 487, 717
HinfI GANTC 9 cut(s) 50, 243, 370, 443, 598, 677, 699, 760, 921
HpaII CCGG 3 cut(s) 252, 303, 591
HphI GGTGA 3 cut(s) 134, 179, 427
Hpy166II GTNNAC 2 cut(s) 34, 997
Hpy188I TCNGA 3 cut(s) 76, 363, 972
Hpy188III TCNNGA 4 cut(s) 265, 703, 918, 925
Hpy8I GTNNAC 2 cut(s) 34, 997
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 837
HpyCH4V TGCA 3 cut(s) 56, 341, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 466, 620
HpyF3I CTNAG 3 cut(s) 75, 258, 461
Hsp92II CATG 3 cut(s) 338, 487, 717
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
LmnI GCTCC 2 cut(s) 363, 979
LweI GCATC 2 cut(s) 896, 963
MaeI CTAG 3 cut(s) 624, 821, 846
MalI GATC 7 cut(s) 66, 180, 324, 536, 584, 709, 844
MboI GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
MboII GAAGA 5 cut(s) 103, 221, 544, 764, 840
MflI RGATCY 3 cut(s) 178, 322, 842
MhlI GDGCHC 3 cut(s) 368, 521, 984
MluCI AATT 4 cut(s) 134, 298, 312, 671
MlyI GAGTC 2 cut(s) 59, 686
MmeI TCCRAC 1 cut(s) 796
MseI TTAA 2 cut(s) 431, 894
MslI CAYNNNNRTG 3 cut(s) 29, 42, 718
MspI CCGG 3 cut(s) 252, 303, 591
MspR9I CCNGG 3 cut(s) 253, 308, 505
MvaI CCWGG 2 cut(s) 308, 505
MwoI GCNNNNNNNGC 2 cut(s) 466, 620
NciI CCSGG 1 cut(s) 253
NcoI CCATGG 1 cut(s) 334
NdeI CATATG 1 cut(s) 184
NdeII GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
NheI GCTAGC 1 cut(s) 623
NlaIII CATG 3 cut(s) 338, 487, 717
NlaIV GGNNCC 3 cut(s) 365, 519, 571
NspI RCATGY 1 cut(s) 717
OliI CACNNNNGTG 1 cut(s) 29
PciI ACATGT 1 cut(s) 713
PfeI GAWTC 7 cut(s) 243, 370, 443, 598, 699, 760, 921
PleI GAGTC 2 cut(s) 58, 685
PpsI GAGTC 2 cut(s) 58, 685
PscI ACATGT 1 cut(s) 713
PshBI ATTAAT 1 cut(s) 894
Psp6I CCWGG 2 cut(s) 306, 503
PspGI CCWGG 2 cut(s) 306, 503
PspN4I GGNNCC 3 cut(s) 365, 519, 571
PspOMI GGGCCC 1 cut(s) 517
PspPI GGNCC 3 cut(s) 402, 517, 518
PsuI RGATCY 3 cut(s) 178, 322, 842
RsaI GTAC 4 cut(s) 35, 398, 542, 839
RsaNI GTAC 4 cut(s) 34, 397, 541, 838
RseI CAYNNNNRTG 3 cut(s) 29, 42, 718
SaqAI TTAA 2 cut(s) 431, 894
Sau3AI GATC 7 cut(s) 64, 178, 322, 534, 582, 707, 842
Sau96I GGNCC 3 cut(s) 402, 517, 518
SchI GAGTC 2 cut(s) 59, 686
ScrFI CCNGG 3 cut(s) 253, 308, 505
SduI GDGCHC 3 cut(s) 368, 521, 984
SetI ASST 9 cut(s) 149, 228, 471, 575, 606, 625, 805, 960, 989
SfaNI GCATC 2 cut(s) 896, 963
SfcI CTRYAG 1 cut(s) 574
SmiMI CAYNNNNRTG 3 cut(s) 29, 42, 718
SmlI CTYRAG 2 cut(s) 725, 925
SmoI CTYRAG 2 cut(s) 725, 925
Sse9I AATT 4 cut(s) 134, 298, 312, 671
SsiI CCGC 1 cut(s) 612
SspMI CTAG 3 cut(s) 624, 821, 846
StyD4I CCNGG 3 cut(s) 251, 306, 503
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 837
TaqI TCGA 3 cut(s) 48, 236, 940
TasI AATT 4 cut(s) 134, 298, 312, 671
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 7 cut(s) 243, 370, 443, 598, 699, 760, 921
Tru1I TTAA 2 cut(s) 431, 894
Tru9I TTAA 2 cut(s) 431, 894
TspDTI ATGAA 2 cut(s) 362, 545
TspGWI ACGGA 1 cut(s) 855
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 2 cut(s) 134, 298
XceI RCATGY 1 cut(s) 717
XmiI GTMKAC 1 cut(s) 996
XspI CTAG 3 cut(s) 624, 821, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.