RchiOBHm_Chr6g0271731

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001076
Physical Location & Seq
Forward (+)
31630395 .. 31633073
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24373

Sequence Viewer

Length: 606 bp
ATGCCGGAAGCAGTGGTGATAGTAGTTGGGGCGGGCCCGTCCGGCCTCGCCATGGCCGGCTGTCTCAGCCGGCTCGAAATCCCATACCTACTTCTTGAAAGAGAGGACTGCTATGCTCCTCTTTGGAAGAAGTACTCCTACGACCGTCTCCACCTTCACCTTCAGAAGCAGGTCTGTGAGCTCCCCCACATGTCATTCCCGTCCTCTTATCCCACGTATGTACCCAAAAAACAGTTCATTCAGTACTTGGATGACTACGTTGCACATTTCAAGATCAGTCCCATGTACCACAGAAATGTCGAGTCTGCAAGTTATGATCAGGGTTGTGAGAGATGGGTTGTGAAGACGATAAACAATGATGAGTTCTGTCGTGGTGAGGAGGAGGAATTTTTGGGAAGGTTTTTGGTGGTGGCTACTGGTGAAACAACAGATCCATATGTGCCAGAGATTGAAGGGTTGAGTAGTTTCAATGGGGAGGTTCTTCACTCGACCCGATTCAAATCCGGGGCTGAGTTCAAGAACAAGAATGTTTTGGTTGTCGGCTCTGGGAATTCCGCCTGGAAATTGCTTTGGATCTGGCAAACCATGGTGCAAAGACTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

201

Amino Acids

23.08

Weight (kDa)

5.88

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 6 - 187 7.8e-14 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 6 - 187 1.1e-07 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 187 9.6e-19 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 71 - 187 1.5e-10 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AciI CCGC 2 cut(s) 32, 555
AclWI GGATC 2 cut(s) 425, 581
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 386, 550
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 4 cut(s) 134, 222, 245, 287
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 7 cut(s) 98, 271, 452, 469, 499, 517, 602
AjnI CCWGG 1 cut(s) 557
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 68, 152
AlwI GGATC 2 cut(s) 425, 581
AoxI GGCC 3 cut(s) 34, 43, 54
ApaI GGGCCC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 386, 550
AspS9I GGNCC 2 cut(s) 34, 35
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 4 cut(s) 28, 149, 386, 431
BaeGI GKGCMC 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 2 cut(s) 38, 183
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 559
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 68, 152
BfuAI ACCTGC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 42
BmcAI AGTACT 2 cut(s) 134, 245
Bme1390I CCNGG 2 cut(s) 505, 559
BmgT120I GGNCC 2 cut(s) 34, 35
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 505, 559
BpiI GAAGAC 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 499
BsaJI CCNNGG 3 cut(s) 51, 504, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 2 cut(s) 56, 69
Bse1I ACTGG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 499
BseBI CCWGG 1 cut(s) 559
BseDI CCNNGG 3 cut(s) 51, 504, 585
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 499
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 79, 501
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 3 cut(s) 108, 392, 395
BseSI GKGCMC 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 36, 45, 56
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 5 cut(s) 5, 42, 57, 70, 504
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 68, 152
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 3 cut(s) 36, 45, 56
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 38, 183
Bsp143I GATC 4 cut(s) 273, 316, 430, 573
Bsp19I CCATGG 2 cut(s) 51, 585
BspACI CCGC 2 cut(s) 32, 555
BspANI GGCC 3 cut(s) 36, 45, 56
BspCNI CTCAG 2 cut(s) 78, 502
BspLI GGNNCC 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 425, 581
BsrFI RCCGGY 2 cut(s) 56, 69
BsrI ACTGG 1 cut(s) 421
BssAI RCCGGY 2 cut(s) 56, 69
BssECI CCNNGG 3 cut(s) 51, 504, 585
BssMI GATC 4 cut(s) 273, 316, 430, 573
BssT1I CCWWGG 2 cut(s) 51, 585
Bst2UI CCWGG 1 cut(s) 559
Bst4CI ACNGT 2 cut(s) 146, 234
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 34, 58, 71
BstDEI CTNAG 2 cut(s) 65, 510
BstDSI CCRYGG 2 cut(s) 51, 585
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 4 cut(s) 276, 319, 433, 576
BstMAI GTCTC 2 cut(s) 68, 152
BstMBI GATC 4 cut(s) 273, 316, 430, 573
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 42, 66
BstNI CCWGG 1 cut(s) 559
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 503, 557
BstSLI GKGCMC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 430, 573
BstYI RGATCY 2 cut(s) 430, 573
BsuRI GGCC 3 cut(s) 36, 45, 56
BtgI CCRYGG 2 cut(s) 51, 585
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 3 cut(s) 34, 58, 71
Cfr10I RCCGGY 2 cut(s) 56, 69
Cfr13I GGNCC 2 cut(s) 34, 35
Csp6I GTAC 4 cut(s) 133, 221, 244, 286
CviAII CATG 4 cut(s) 52, 190, 283, 586
CviQI GTAC 4 cut(s) 133, 221, 244, 286
DdeI CTNAG 2 cut(s) 65, 510
DpnI GATC 4 cut(s) 275, 318, 432, 575
DpnII GATC 4 cut(s) 273, 316, 430, 573
EaeI YGGCCR 1 cut(s) 54
EciI GGCGGA 1 cut(s) 544
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 51, 585
Eco24I GRGCYC 2 cut(s) 38, 183
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 557
EcoT14I CCWWGG 2 cut(s) 51, 585
EcoT38I GRGCYC 2 cut(s) 38, 183
ErhI CCWWGG 2 cut(s) 51, 585
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 4 cut(s) 55, 193, 286, 589
FaqI GGGAC 1 cut(s) 264
FatI CATG 4 cut(s) 51, 189, 282, 585
FauI CCCGC 1 cut(s) 25
FauNDI CATATG 1 cut(s) 436
FbaI TGATCA 1 cut(s) 316
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 2 cut(s) 38, 183
HaeIII GGCC 3 cut(s) 36, 45, 56
HapII CCGG 5 cut(s) 5, 42, 57, 70, 504
Hin1II CATG 4 cut(s) 55, 193, 286, 589
HinfI GANTC 2 cut(s) 302, 495
HpaII CCGG 5 cut(s) 5, 42, 57, 70, 504
HphI GGTGA 4 cut(s) 28, 149, 386, 431
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 95, 271, 517
HpyAV CCTTC 4 cut(s) 164, 170, 390, 446
HpyCH4III ACNGT 2 cut(s) 146, 234
HpyCH4IV ACGT 2 cut(s) 215, 258
HpyCH4V TGCA 3 cut(s) 263, 308, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 66
HpyF3I CTNAG 2 cut(s) 65, 510
HpySE526I ACGT 2 cut(s) 215, 258
Hsp92II CATG 4 cut(s) 55, 193, 286, 589
KroI GCCGGC 2 cut(s) 56, 69
KroNI GCCGGC 2 cut(s) 58, 71
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 273, 316, 430, 573
LmnI GCTCC 2 cut(s) 121, 186
MaeII ACGT 2 cut(s) 215, 258
MalI GATC 4 cut(s) 275, 318, 432, 575
MboI GATC 4 cut(s) 273, 316, 430, 573
MboII GAAGA 3 cut(s) 139, 355, 473
MflI RGATCY 2 cut(s) 430, 573
MhlI GDGCHC 2 cut(s) 38, 183
MluCI AATT 3 cut(s) 386, 550, 563
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 8 cut(s) 56, 97, 129, 214, 370, 373, 376, 469
MroNI GCCGGC 2 cut(s) 56, 69
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 5 cut(s) 5, 42, 57, 70, 504
MspR9I CCNGG 2 cut(s) 505, 559
MvaI CCWGG 1 cut(s) 559
MwoI GCNNNNNNNGC 2 cut(s) 42, 66
NaeI GCCGGC 2 cut(s) 58, 71
NciI CCSGG 1 cut(s) 505
NcoI CCATGG 2 cut(s) 51, 585
NdeI CATATG 1 cut(s) 436
NdeII GATC 4 cut(s) 273, 316, 430, 573
NgoMIV GCCGGC 2 cut(s) 56, 69
NlaIII CATG 4 cut(s) 55, 193, 286, 589
NlaIV GGNNCC 1 cut(s) 36
NspI RCATGY 1 cut(s) 193
PciI ACATGT 1 cut(s) 189
PdiI GCCGGC 2 cut(s) 58, 71
PfeI GAWTC 1 cut(s) 495
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 216
PscI ACATGT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 557
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 36
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 34, 35
PsuI RGATCY 2 cut(s) 430, 573
RsaI GTAC 4 cut(s) 134, 222, 245, 287
RsaNI GTAC 4 cut(s) 133, 221, 244, 286
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 183
Sau3AI GATC 4 cut(s) 273, 316, 430, 573
Sau96I GGNCC 2 cut(s) 34, 35
ScaI AGTACT 2 cut(s) 134, 245
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 505, 559
SduI GDGCHC 2 cut(s) 38, 183
SetI ASST 9 cut(s) 90, 156, 162, 174, 183, 218, 261, 401, 480
SfiI GGCCNNNNNGGCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 3 cut(s) 386, 550, 563
SsiI CCGC 2 cut(s) 32, 555
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 503, 557
StyI CCWWGG 2 cut(s) 51, 585
TaaI ACNGT 2 cut(s) 146, 234
TaiI ACGT 2 cut(s) 218, 261
TaqI TCGA 3 cut(s) 75, 300, 488
TasI AATT 3 cut(s) 386, 550, 563
TatI WGTACW 2 cut(s) 132, 243
TfiI GAWTC 1 cut(s) 495
TscAI CASTG 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 226
TspRI CASTG 1 cut(s) 18
XapI RAATTY 2 cut(s) 386, 550
XceI RCATGY 1 cut(s) 193
ZrmI AGTACT 2 cut(s) 134, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.