DNA (cytosine-5)-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69770 |
| fragaria_vesca | FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560 |
| malus_domestica | MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1 |
| prunus_persica | Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1 |
| pyrus_communis | pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900 |
| rosa_chinensis | RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071 |
| rosa_laevigata | RLG00000005861 RLG00000009362 RLG00000015713 |
| rosa_multiflora | Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620 |
| rosa_rugosa | Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400 |
| rosa_samantha | Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500 |
| rosa_wichuraiana | Rw2G001030 Rw4G007200 Rw4G035230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1492 |
| Acc65I | GGTACC | 1 cut(s) | 2020 |
| AccB1I | GGYRCC | 1 cut(s) | 2020 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1268 |
| AccBSI | CCGCTC | 1 cut(s) | 1216 |
| AccI | GTMKAC | 3 cut(s) | 770, 1984, 2188 |
| AccII | CGCG | 1 cut(s) | 68 |
| AciI | CCGC | 7 cut(s) | 66, 98, 157, 889, 1216, 1730, 1793 |
| AclI | AACGTT | 1 cut(s) | 522 |
| AclWI | GGATC | 5 cut(s) | 379, 1052, 1100, 1138, 2368 |
| AcsI | RAATTY | 3 cut(s) | 226, 350, 1451 |
| AcuI | CTGAAG | 2 cut(s) | 881, 1083 |
| AcyI | GRCGYC | 1 cut(s) | 1489 |
| AdeI | CACNNNGTG | 1 cut(s) | 1633 |
| AfaI | GTAC | 4 cut(s) | 1221, 2022, 2097, 2151 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 100, 163, 200, 393, 1153, 1268, 1307, 1793, 2131 |
| AflII | CTTAAG | 1 cut(s) | 74 |
| AjiI | CACGTC | 1 cut(s) | 2186 |
| AjnI | CCWGG | 5 cut(s) | 162, 1178, 1267, 1725, 1871 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 449, 481 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1479, 1511 |
| Alw21I | GWGCWC | 1 cut(s) | 1588 |
| Alw26I | GTCTC | 2 cut(s) | 16, 2084 |
| AlwI | GGATC | 5 cut(s) | 379, 1052, 1100, 1138, 2368 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2270 |
| Ama87I | CYCGRG | 2 cut(s) | 43, 509 |
| AoxI | GGCC | 7 cut(s) | 30, 91, 112, 149, 191, 775, 2299 |
| ApeKI | GCWGC | 5 cut(s) | 5, 1166, 1532, 1849, 1852 |
| ApoI | RAATTY | 3 cut(s) | 226, 350, 1451 |
| AseI | ATTAAT | 1 cut(s) | 648 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 504 |
| Asp718I | GGTACC | 1 cut(s) | 2020 |
| AspLEI | GCGC | 2 cut(s) | 169, 764 |
| AspS9I | GGNCC | 6 cut(s) | 92, 113, 150, 1295, 1796, 2222 |
| AsuHPI | GGTGA | 1 cut(s) | 1115 |
| AvaI | CYCGRG | 2 cut(s) | 43, 509 |
| AvaII | GGWCC | 3 cut(s) | 1295, 1796, 2222 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1211, 1244, 2012, 2045 |
| BanI | GGYRCC | 1 cut(s) | 2020 |
| BanII | GRGCYC | 2 cut(s) | 1588, 2124 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2348, 2380 |
| BbsI | GAAGAC | 1 cut(s) | 1564 |
| Bbv12I | GWGCWC | 1 cut(s) | 1588 |
| BbvI | GCAGC | 5 cut(s) | 17, 1153, 1544, 1836, 1864 |
| BccI | CCATC | 5 cut(s) | 141, 263, 311, 879, 1143 |
| BceAI | ACGGC | 1 cut(s) | 106 |
| BciT130I | CCWGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| BciVI | GTATCC | 1 cut(s) | 1168 |
| BclI | TGATCA | 1 cut(s) | 1921 |
| BcoDI | GTCTC | 2 cut(s) | 16, 2084 |
| BfaI | CTAG | 4 cut(s) | 189, 717, 1709, 1940 |
| BfmI | CTRYAG | 2 cut(s) | 1850, 2041 |
| BfoI | RGCGCY | 1 cut(s) | 170 |
| BfrI | CTTAAG | 1 cut(s) | 74 |
| BfuI | GTATCC | 1 cut(s) | 1168 |
| BisI | GCNGC | 6 cut(s) | 6, 66, 1167, 1533, 1850, 1853 |
| BlsI | GCNGC | 6 cut(s) | 7, 67, 1168, 1534, 1851, 1854 |
| Bme1390I | CCNGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| Bme18I | GGWCC | 3 cut(s) | 1295, 1796, 2222 |
| BmeT110I | CYCGRG | 2 cut(s) | 43, 509 |
| BmgBI | CACGTC | 1 cut(s) | 2186 |
| BmgT120I | GGNCC | 6 cut(s) | 92, 113, 150, 1295, 1796, 2222 |
| BmiI | GGNNCC | 5 cut(s) | 94, 1185, 1466, 1797, 2022 |
| BmrFI | CCNGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| BmsI | GCATC | 6 cut(s) | 282, 286, 1153, 1533, 1723, 2152 |
| BpiI | GAAGAC | 1 cut(s) | 1564 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1591, 1623 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1170 |
| BpuEI | CTTGAG | 3 cut(s) | 155, 688, 1391 |
| BsaAI | YACGTR | 2 cut(s) | 1988, 2174 |
| BsaHI | GRCGYC | 1 cut(s) | 1489 |
| BsaI | GGTCTC | 1 cut(s) | 16 |
| BsaJI | CCNNGG | 5 cut(s) | 42, 784, 1179, 1306, 1468 |
| BsaWI | WCCGGW | 1 cut(s) | 25 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 100, 163, 200, 393, 1153, 1268, 1307, 1793, 2131 |
| Bse118I | RCCGGY | 1 cut(s) | 100 |
| Bse1I | ACTGG | 6 cut(s) | 778, 1045, 1051, 1356, 2015, 2225 |
| Bse3DI | GCAATG | 3 cut(s) | 246, 771, 1057 |
| BseBI | CCWGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| BseDI | CCNNGG | 5 cut(s) | 42, 784, 1179, 1306, 1468 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 100, 163, 200, 393, 1153, 1268, 1307, 1793, 2131 |
| BseMI | GCAATG | 3 cut(s) | 246, 771, 1057 |
| BseMII | CTCAG | 4 cut(s) | 1184, 1190, 1587, 2384 |
| BseNI | ACTGG | 6 cut(s) | 778, 1045, 1051, 1356, 2015, 2225 |
| BseXI | GCAGC | 5 cut(s) | 17, 1153, 1544, 1836, 1864 |
| BseYI | CCCAGC | 1 cut(s) | 434 |
| BsgI | GTGCAG | 1 cut(s) | 1385 |
| Bsh1236I | CGCG | 1 cut(s) | 68 |
| BshFI | GGCC | 7 cut(s) | 32, 93, 114, 151, 193, 777, 2301 |
| BshNI | GGYRCC | 1 cut(s) | 2020 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1588 |
| BsiHKCI | CYCGRG | 2 cut(s) | 43, 509 |
| BsiSI | CCGG | 2 cut(s) | 26, 101 |
| BslFI | GGGAC | 3 cut(s) | 451, 1500, 1928 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 100, 163, 200, 393, 1153, 1268, 1307, 1793, 2131 |
| BsmAI | GTCTC | 2 cut(s) | 16, 2084 |
| BsmFI | GGGAC | 3 cut(s) | 451, 1500, 1928 |
| BsmI | GAATGC | 4 cut(s) | 506, 1855, 2185, 2260 |
| BsnI | GGCC | 7 cut(s) | 32, 93, 114, 151, 193, 777, 2301 |
| Bso31I | GGTCTC | 1 cut(s) | 16 |
| BsoBI | CYCGRG | 2 cut(s) | 43, 509 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1588, 2124 |
| Bsp1407I | TGTACA | 1 cut(s) | 2149 |
| BspACI | CCGC | 7 cut(s) | 66, 98, 157, 889, 1216, 1730, 1793 |
| BspANI | GGCC | 7 cut(s) | 32, 93, 114, 151, 193, 777, 2301 |
| BspCNI | CTCAG | 4 cut(s) | 1183, 1191, 1588, 2383 |
| BspFNI | CGCG | 1 cut(s) | 68 |
| BspHI | TCATGA | 1 cut(s) | 1924 |
| BspLI | GGNNCC | 5 cut(s) | 94, 1185, 1466, 1797, 2022 |
| BspMAI | CTGCAG | 1 cut(s) | 1854 |
| BspPI | GGATC | 5 cut(s) | 379, 1052, 1100, 1138, 2368 |
| BspT107I | GGYRCC | 1 cut(s) | 2020 |
| BspTI | CTTAAG | 1 cut(s) | 74 |
| BspTNI | GGTCTC | 1 cut(s) | 16 |
| BsrBI | CCGCTC | 1 cut(s) | 1216 |
| BsrDI | GCAATG | 3 cut(s) | 246, 771, 1057 |
| BsrFI | RCCGGY | 1 cut(s) | 100 |
| BsrGI | TGTACA | 1 cut(s) | 2149 |
| BsrI | ACTGG | 6 cut(s) | 778, 1045, 1051, 1356, 2015, 2225 |
| BssAI | RCCGGY | 1 cut(s) | 100 |
| BssECI | CCNNGG | 5 cut(s) | 42, 784, 1179, 1306, 1468 |
| BssNAI | GTATAC | 1 cut(s) | 1985 |
| BssNI | GRCGYC | 1 cut(s) | 1489 |
| BssT1I | CCWWGG | 3 cut(s) | 784, 1306, 1468 |
| Bst1107I | GTATAC | 1 cut(s) | 1985 |
| Bst2UI | CCWGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| BstACI | GRCGYC | 1 cut(s) | 1489 |
| BstAFI | CTTAAG | 1 cut(s) | 74 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 797, 1538 |
| BstAUI | TGTACA | 1 cut(s) | 2149 |
| BstBAI | YACGTR | 2 cut(s) | 1988, 2174 |
| BstC8I | GCNNGC | 5 cut(s) | 102, 139, 143, 802, 846 |
| BstDEI | CTNAG | 7 cut(s) | 1170, 1199, 1596, 2025, 2216, 2352, 2370 |
| BstFNI | CGCG | 1 cut(s) | 68 |
| BstH2I | RGCGCY | 1 cut(s) | 170 |
| BstHHI | GCGC | 2 cut(s) | 169, 764 |
| BstMAI | GTCTC | 2 cut(s) | 16, 2084 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 797, 1408, 1538 |
| BstNI | CCWGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| BstNSI | RCATGY | 4 cut(s) | 692, 795, 848, 1421 |
| BstSCI | CCNGG | 5 cut(s) | 162, 1178, 1267, 1725, 1871 |
| BstSFI | CTRYAG | 2 cut(s) | 1850, 2041 |
| BstSNI | TACGTA | 1 cut(s) | 1988 |
| BstUI | CGCG | 1 cut(s) | 68 |
| BstV1I | GCAGC | 5 cut(s) | 17, 1153, 1544, 1836, 1864 |
| BstV2I | GAAGAC | 1 cut(s) | 1564 |
| BstX2I | RGATCY | 4 cut(s) | 371, 1057, 1143, 2373 |
| BstYI | RGATCY | 4 cut(s) | 371, 1057, 1143, 2373 |
| BstZ17I | GTATAC | 1 cut(s) | 1985 |
| BsuI | GTATCC | 1 cut(s) | 1168 |
| BsuRI | GGCC | 7 cut(s) | 32, 93, 114, 151, 193, 777, 2301 |
| BtgZI | GCGATG | 1 cut(s) | 160 |
| BtrI | CACGTC | 1 cut(s) | 2186 |
| BtsI | GCAGTG | 1 cut(s) | 1644 |
| BtsIMutI | CAGTG | 6 cut(s) | 1044, 1321, 1349, 1644, 2022, 2336 |
| Cac8I | GCNNGC | 5 cut(s) | 102, 139, 143, 802, 846 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2270 |
| CciI | TCATGA | 1 cut(s) | 1924 |
| CfoI | GCGC | 2 cut(s) | 169, 764 |
| Cfr10I | RCCGGY | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 6 cut(s) | 92, 113, 150, 1295, 1796, 2222 |
| CsiI | ACCWGGT | 1 cut(s) | 1267 |
| Csp6I | GTAC | 4 cut(s) | 1220, 2021, 2096, 2150 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2200, 2235 |
| CviAII | CATG | 8 cut(s) | 689, 792, 845, 986, 1418, 1501, 1528, 1925 |
| CviQI | GTAC | 4 cut(s) | 1220, 2021, 2096, 2150 |
| DdeI | CTNAG | 7 cut(s) | 1170, 1199, 1596, 2025, 2216, 2352, 2370 |
| DraIII | CACNNNGTG | 1 cut(s) | 1633 |
| EciI | GGCGGA | 1 cut(s) | 1745 |
| Ecl136II | GAGCTC | 1 cut(s) | 1586 |
| Eco105I | TACGTA | 1 cut(s) | 1988 |
| Eco130I | CCWWGG | 3 cut(s) | 784, 1306, 1468 |
| Eco147I | AGGCCT | 2 cut(s) | 32, 2301 |
| Eco24I | GRGCYC | 2 cut(s) | 1588, 2124 |
| Eco31I | GGTCTC | 1 cut(s) | 16 |
| Eco47I | GGWCC | 3 cut(s) | 1295, 1796, 2222 |
| Eco53kI | GAGCTC | 1 cut(s) | 1586 |
| Eco57I | CTGAAG | 2 cut(s) | 881, 1083 |
| Eco88I | CYCGRG | 2 cut(s) | 43, 509 |
| EcoICRI | GAGCTC | 1 cut(s) | 1586 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1796 |
| EcoRI | GAATTC | 1 cut(s) | 350 |
| EcoRII | CCWGG | 5 cut(s) | 162, 1178, 1267, 1725, 1871 |
| EcoT14I | CCWWGG | 3 cut(s) | 784, 1306, 1468 |
| EcoT22I | ATGCAT | 2 cut(s) | 1483, 2296 |
| EcoT38I | GRGCYC | 2 cut(s) | 1588, 2124 |
| ErhI | CCWWGG | 3 cut(s) | 784, 1306, 1468 |
| FaeI | CATG | 8 cut(s) | 692, 795, 848, 989, 1421, 1504, 1531, 1928 |
| FaqI | GGGAC | 3 cut(s) | 451, 1500, 1928 |
| FatI | CATG | 8 cut(s) | 688, 791, 844, 985, 1417, 1500, 1527, 1924 |
| FauI | CCCGC | 3 cut(s) | 105, 1209, 1786 |
| FauNDI | CATATG | 2 cut(s) | 970, 1543 |
| FbaI | TGATCA | 1 cut(s) | 1921 |
| FblI | GTMKAC | 3 cut(s) | 770, 1984, 2188 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 66, 1167, 1533, 1850, 1853 |
| FriOI | GRGCYC | 2 cut(s) | 1588, 2124 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 66, 1167, 1533, 1850, 1853 |
| FspBI | CTAG | 4 cut(s) | 189, 717, 1709, 1940 |
| GlaI | GCGC | 2 cut(s) | 168, 763 |
| GluI | GCNGC | 6 cut(s) | 6, 66, 1167, 1533, 1850, 1853 |
| GsaI | CCCAGC | 1 cut(s) | 438 |
| HaeII | RGCGCY | 1 cut(s) | 170 |
| HaeIII | GGCC | 7 cut(s) | 32, 93, 114, 151, 193, 777, 2301 |
| HapII | CCGG | 2 cut(s) | 26, 101 |
| HhaI | GCGC | 2 cut(s) | 169, 764 |
| Hin1I | GRCGYC | 1 cut(s) | 1489 |
| Hin1II | CATG | 8 cut(s) | 692, 795, 848, 989, 1421, 1504, 1531, 1928 |
| Hin6I | GCGC | 2 cut(s) | 167, 762 |
| HinP1I | GCGC | 2 cut(s) | 167, 762 |
| HincII | GTYRAC | 2 cut(s) | 771, 1441 |
| HindII | GTYRAC | 2 cut(s) | 771, 1441 |
| HindIII | AAGCTT | 3 cut(s) | 71, 515, 2213 |
| HpaII | CCGG | 2 cut(s) | 26, 101 |
| HphI | GGTGA | 1 cut(s) | 1115 |
| Hpy188III | TCNNGA | 9 cut(s) | 125, 172, 511, 528, 875, 1061, 1172, 1925, 2201 |
| Hpy99I | CGWCG | 1 cut(s) | 134 |
| HpyAV | CCTTC | 6 cut(s) | 175, 515, 548, 1147, 1685, 2041 |
| HpyCH4IV | ACGT | 5 cut(s) | 522, 1489, 1987, 2173, 2185 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 797, 1408, 1538 |
| HpyF3I | CTNAG | 7 cut(s) | 1170, 1199, 1596, 2025, 2216, 2352, 2370 |
| HpySE526I | ACGT | 5 cut(s) | 522, 1489, 1987, 2173, 2185 |
| Hsp92I | GRCGYC | 1 cut(s) | 1489 |
| Hsp92II | CATG | 8 cut(s) | 692, 795, 848, 989, 1421, 1504, 1531, 1928 |
| HspAI | GCGC | 2 cut(s) | 167, 762 |
| KpnI | GGTACC | 1 cut(s) | 2024 |
| KroI | GCCGGC | 1 cut(s) | 100 |
| KroNI | GCCGGC | 1 cut(s) | 102 |
| Ksp22I | TGATCA | 1 cut(s) | 1921 |
| LmnI | GCTCC | 3 cut(s) | 1183, 1583, 1906 |
| Lsp1109I | GCAGC | 5 cut(s) | 17, 1153, 1544, 1836, 1864 |
| LweI | GCATC | 6 cut(s) | 282, 286, 1153, 1533, 1723, 2152 |
| MabI | ACCWGGT | 1 cut(s) | 1267 |
| MaeI | CTAG | 4 cut(s) | 189, 717, 1709, 1940 |
| MaeII | ACGT | 5 cut(s) | 522, 1489, 1987, 2173, 2185 |
| MaeIII | GTNAC | 5 cut(s) | 382, 581, 609, 814, 2107 |
| MbiI | CCGCTC | 1 cut(s) | 1216 |
| MflI | RGATCY | 4 cut(s) | 371, 1057, 1143, 2373 |
| MhlI | GDGCHC | 2 cut(s) | 1588, 2124 |
| MlyI | GAGTC | 4 cut(s) | 722, 1210, 1824, 1941 |
| MmeI | TCCRAC | 2 cut(s) | 1646, 1884 |
| Mph1103I | ATGCAT | 2 cut(s) | 1483, 2296 |
| MreI | CGCCGGCG | 1 cut(s) | 100 |
| MroNI | GCCGGC | 1 cut(s) | 100 |
| MroXI | GAANNNNTTC | 1 cut(s) | 504 |
| MseI | TTAA | 9 cut(s) | 75, 357, 519, 648, 678, 807, 867, 1323, 1424 |
| MslI | CAYNNNNRTG | 1 cut(s) | 849 |
| MspA1I | CMGCKG | 2 cut(s) | 1375, 1535 |
| MspCI | CTTAAG | 1 cut(s) | 74 |
| MspI | CCGG | 2 cut(s) | 26, 101 |
| MspR9I | CCNGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| Mva1269I | GAATGC | 4 cut(s) | 506, 1855, 2185, 2260 |
| MvaI | CCWGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| MvnI | CGCG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 797, 1408, 1538 |
| NaeI | GCCGGC | 1 cut(s) | 102 |
| NdeI | CATATG | 2 cut(s) | 970, 1543 |
| NgoMIV | GCCGGC | 1 cut(s) | 100 |
| NlaIII | CATG | 8 cut(s) | 692, 795, 848, 989, 1421, 1504, 1531, 1928 |
| NlaIV | GGNNCC | 5 cut(s) | 94, 1185, 1466, 1797, 2022 |
| NmeAIII | GCCGAG | 1 cut(s) | 1812 |
| NmuCI | GTSAC | 1 cut(s) | 581 |
| NsiI | ATGCAT | 2 cut(s) | 1483, 2296 |
| NspI | RCATGY | 4 cut(s) | 692, 795, 848, 1421 |
| PaeI | GCATGC | 1 cut(s) | 848 |
| PagI | TCATGA | 1 cut(s) | 1924 |
| PceI | AGGCCT | 2 cut(s) | 32, 2301 |
| PctI | GAATGC | 4 cut(s) | 506, 1855, 2185, 2260 |
| PdiI | GCCGGC | 1 cut(s) | 102 |
| PdmI | GAANNNNTTC | 1 cut(s) | 504 |
| PfeI | GAWTC | 7 cut(s) | 121, 452, 631, 896, 974, 1311, 2137 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1268 |
| PfoI | TCCNGGA | 1 cut(s) | 1871 |
| PkrI | GCNGC | 6 cut(s) | 7, 67, 1168, 1534, 1851, 1854 |
| PleI | GAGTC | 4 cut(s) | 721, 1209, 1824, 1940 |
| PpsI | GAGTC | 4 cut(s) | 721, 1209, 1824, 1940 |
| Ppu21I | YACGTR | 2 cut(s) | 1988, 2174 |
| PpuMI | RGGWCCY | 1 cut(s) | 1796 |
| PshBI | ATTAAT | 1 cut(s) | 648 |
| Psp124BI | GAGCTC | 1 cut(s) | 1588 |
| Psp1406I | AACGTT | 1 cut(s) | 522 |
| Psp5II | RGGWCCY | 1 cut(s) | 1796 |
| Psp6I | CCWGG | 5 cut(s) | 162, 1178, 1267, 1725, 1871 |
| PspFI | CCCAGC | 1 cut(s) | 434 |
| PspGI | CCWGG | 5 cut(s) | 162, 1178, 1267, 1725, 1871 |
| PspN4I | GGNNCC | 5 cut(s) | 94, 1185, 1466, 1797, 2022 |
| PspPI | GGNCC | 6 cut(s) | 92, 113, 150, 1295, 1796, 2222 |
| PspPPI | RGGWCCY | 1 cut(s) | 1796 |
| PstI | CTGCAG | 1 cut(s) | 1854 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2270 |
| PsuI | RGATCY | 4 cut(s) | 371, 1057, 1143, 2373 |
| PvuII | CAGCTG | 2 cut(s) | 1375, 1535 |
| RsaI | GTAC | 4 cut(s) | 1221, 2022, 2097, 2151 |
| RsaNI | GTAC | 4 cut(s) | 1220, 2021, 2096, 2150 |
| RseI | CAYNNNNRTG | 1 cut(s) | 849 |
| SacI | GAGCTC | 1 cut(s) | 1588 |
| SalI | GTCGAC | 1 cut(s) | 769 |
| SaqAI | TTAA | 9 cut(s) | 75, 357, 519, 648, 678, 807, 867, 1323, 1424 |
| SatI | GCNGC | 6 cut(s) | 6, 66, 1167, 1533, 1850, 1853 |
| Sau96I | GGNCC | 6 cut(s) | 92, 113, 150, 1295, 1796, 2222 |
| SchI | GAGTC | 4 cut(s) | 722, 1210, 1824, 1941 |
| ScrFI | CCNGG | 5 cut(s) | 164, 1180, 1269, 1727, 1873 |
| SduI | GDGCHC | 2 cut(s) | 1588, 2124 |
| SexAI | ACCWGGT | 1 cut(s) | 1267 |
| SfaNI | GCATC | 6 cut(s) | 282, 286, 1153, 1533, 1723, 2152 |
| SfcI | CTRYAG | 2 cut(s) | 1850, 2041 |
| SgrAI | CRCCGGYG | 1 cut(s) | 100 |
| SinI | GGWCC | 3 cut(s) | 1295, 1796, 2222 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 849 |
| SmlI | CTYRAG | 4 cut(s) | 74, 170, 703, 1406 |
| SmoI | CTYRAG | 4 cut(s) | 74, 170, 703, 1406 |
| SnaBI | TACGTA | 1 cut(s) | 1988 |
| SphI | GCATGC | 1 cut(s) | 848 |
| SseBI | AGGCCT | 2 cut(s) | 32, 2301 |
| SsiI | CCGC | 7 cut(s) | 66, 98, 157, 889, 1216, 1730, 1793 |
| SspI | AATATT | 2 cut(s) | 465, 605 |
| SspMI | CTAG | 4 cut(s) | 189, 717, 1709, 1940 |
| SstI | GAGCTC | 1 cut(s) | 1588 |
| StuI | AGGCCT | 2 cut(s) | 32, 2301 |
| StyD4I | CCNGG | 5 cut(s) | 162, 1178, 1267, 1725, 1871 |
| StyI | CCWWGG | 3 cut(s) | 784, 1306, 1468 |
| TaiI | ACGT | 5 cut(s) | 525, 1492, 1990, 2176, 2188 |
| TaqI | TCGA | 5 cut(s) | 348, 403, 620, 770, 2035 |
| TatI | WGTACW | 1 cut(s) | 2149 |
| TauI | GCSGC | 1 cut(s) | 68 |
| TfiI | GAWTC | 7 cut(s) | 121, 452, 631, 896, 974, 1311, 2137 |
| Tru1I | TTAA | 9 cut(s) | 75, 357, 519, 648, 678, 807, 867, 1323, 1424 |
| Tru9I | TTAA | 9 cut(s) | 75, 357, 519, 648, 678, 807, 867, 1323, 1424 |
| TscAI | CASTG | 6 cut(s) | 1051, 1321, 1356, 1644, 2022, 2343 |
| TseFI | GTSAC | 1 cut(s) | 581 |
| TseI | GCWGC | 5 cut(s) | 5, 1166, 1532, 1849, 1852 |
| Tsp45I | GTSAC | 1 cut(s) | 581 |
| TspGWI | ACGGA | 2 cut(s) | 28, 1890 |
| TspRI | CASTG | 6 cut(s) | 1051, 1321, 1356, 1644, 2022, 2343 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1268 |
| Vha464I | CTTAAG | 1 cut(s) | 74 |
| VpaK11BI | GGWCC | 3 cut(s) | 1295, 1796, 2222 |
| VspI | ATTAAT | 1 cut(s) | 648 |
| XapI | RAATTY | 3 cut(s) | 226, 350, 1451 |
| XceI | RCATGY | 4 cut(s) | 692, 795, 848, 1421 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1313 |
| XmiI | GTMKAC | 3 cut(s) | 770, 1984, 2188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 504 |
| XspI | CTAG | 4 cut(s) | 189, 717, 1709, 1940 |
| ZraI | GACGTC | 1 cut(s) | 1490 |
| Zsp2I | ATGCAT | 2 cut(s) | 1483, 2296 |