Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Reverse (-)

612863 .. 619517

Gene Structure 6655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00840.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

ATGGCGTGCAAGCGGAAGTCGAAGTCCGGAACCTCTTCAGGTTCTCCGCCGAAATCGAAGTGGCCAAGGCAAACCAAGAAGGCCAGAGTTGAGGAGGAGGTAGCCACGAGTGTGGAAAAAGCTACTTCTCCGCCGAAATCGAAGAAGACCAGGCAAACCAAGAAGAAGAGAGTTGAAGAGGAGGTAGCAACGAGTGTGGAAAAATCTACTTCTCCGCTGAAATCGAAGAGCCCGAGGCTAACCAGGAGTGCGAGAGTTGAGGAGGAGGTAGCAACGAGTGTGGAAAAAGCTGCTTGTCCTCCGAAATCAAAGAACACGAGGCAAACCAGGAAGACAAGAGTTGAAGAGGAGGTAGCTACGAGTGTTGAAAAAGCTGCTTCTCCGCTGAAATCAAAGAAGACGAGGCAAACCAAGGAGGGAGGATTTGAAGAGGAGGTAGCGGCGAGTGTGGAAAAATCTACTTGTTCTCCAAAATCGAAGAAGCCGAGGCAAACAAAAAATGCGAGAGTTGAAGAGGAGGTAGCGACGAGTGTGGAAATAGCTGCTTCTCCGACGAAATTGAAGAATCCAAGGAAAACCAATAAGGCGACAGTTGAAGAGGAGGCAGCAACGAGTGTGGAAAAAGCTGCTTCTCCACTGAGGAAGCCAGTGACTCAGGAGGTGGCTGCGGCTGATGAAGACGGAGAGGAATCAAGGTTTATTGGCAAACCGATGGAAGATGAGGAGGCTCGTAAGCAATACCCCAAGCGATATGCGGGAGAGAAGCCAAAGAGGAATGGGCAAAACAACTCCAACGATGATGAAGATATCATTCAAGCTCGTTGTCACTACACAAAGGCGTTGGTGGATGGAATCACTTATGATCTCTATGATGATGCCCATGTGCAAGGAGAGACAAAAGAAGAACCCTTCATTTGTAAGATTGTGGAAATGTTTGAGGCAATTGGTGGGCTATTATATTTTACTGCACAATGGTACTACAGATCACGAGACACTGTCATAAAGCACTGTGCTACTGTTGCTTGTGGGCGTGTTTTCTTTTCAGATGTCCGAGATGACAACCCTCTGGATTGTCTTGTTGAAAAACTTCATATTGTTAGGCTGACACTAAATGTTGATCAAGATGTGAAGAGTAAATCAATTCCAGTGTGCGATTACTATTGCGACACCAAGTATTTACTACCATATTCTACTTTTGTCAATCTGCCAACAGAAAATATGCAGTCTGGAAGTGATGACTCAACTATCTCTGTTGAGGATGATGTTTGTTTGGATAGTGAGGTTGATTCAAAGCTGTCAAATGGACTGTGTGCCAAATCAGAAGTAAGGCTCCTGGACCTATATTCTGGTTGTGGAGCGATGTCTACTGGCCTGTGCCTTGGTGCACATTTGGCCAATGTCAATCTTGTTACAAGATGGGCTGTTGACTACAATGAACATGCTTGTAAAAGTCTAGAACAAAACCATCCAGAGACAGAGGTTCGAAATGAAGCTGCTGAAGATTTTCTCACAATGCTCAAGGAATGGAGAAAATTGTGCATGTGCTTAAAGTTGGTTGAGACTGACAATTTAGAGGAGGATGTAGAGAAGAGTATGCTTGAATTCTTTAGAAGGGAAGATGATGAAGAGGAAGATGAGGAAGAAGAAGAGGAAGAAGATGTTAGTGGAAATGAGAATGATGATTCTGAAGTTTTTGAAGTTGATTGCGTAGTAGGAGTATGTTTTGGTGACCCCAAAAAAAATGAAAAGAAGGGAATATACTTTAAGATTCATTGGAAGGGCTACGGGCCTGAGGAAGACACCTGGGAGCCAATGAATGAATTGGAGCATTGTAAGAAGGCTATCAAAGGCTTTATTACTGAAGGTTACAGATTGAAAAAATTGCCTTTACCTGGTGATGTTGATGTGGTGTGTGGGGGACCCCCTTGCCAAGGAGTTAGTGGTTTCAACAGGTTTAGGAACACAGAAAGTCCATTAGCCGATGAGAAAAACCAACAGTTAGAGGTGTACATGGACATAGTTCAGTACCTTAAGCCAAAGTTTGTTTTGATGGAAAATGTTGTCGATATTTTAAAATTTGCCGATGGATTCCTTGGACGATATGCCTTGGGACGCCTTGTAGATATGAACTATCAAGCGAGGATGGGAATGATGGCAGCTGGTGCCTATGGGCTTCCACAGTTCCGTATGCGAGTTTTTTTGTGGGGGGCCCGTCCTACTGAGATCTTGCCCCAGTACCCTCTTCCTACACATGATGTTATTTCAAGGGGTGTTATTCCTACACAATTTGAGGGTAATGCTGTTGCTTATGATGAAGGTCAGAAGACTCAACTAGCAAAAAGTCTTTATTTGGAGGATGCGATTTCCGATCTGCCTGCTGTTGAAAATAATGAAGAAAGAAATGAGATGCCATATGGGGGCCCACCCAAGACAGAGTTTCAGAGGCTTATACGACTAAGCAAAGAATACCTAATGGGGACTTCAAGGGACAAGTCTTTACAAAAGGTTCTTTATGATCATCGCCCTCTGCAGTTGAATCCTGATGATTATGCACGTGTTTGTGAAGTTCCCAAGAGAAAGGGTGCATGCTTCAGAGATTTTCCAGGTGTTCGTGTGCGCGGTGATAACAGGGTTGAGTGGGATCCGGAAGTACCCAGGGTGTATTTGGCTTCTGGGAAACCATTGGTCCCAGATTATGCTATGAGTTTCGTGAAGGGGTCTTCATCAAAACCTTTTGCCCGCTTGTGGTGGGACGAAACTGTGCCAACAGTTGTGACAAGAGCTGAACCACATAACCAGGCAATTATGCATCCTGAGCAAGATAGGGTGCTGACAATTCGTGAGAATGCCAGGCTACAGGGCTTTCCAGATTTTTACAGGCTCAGCGGGCCAGTAAAAGAAAGGTACATGCAAGTTGGAAATGCTGTCGCTGTTCCGGTTGCGCGTGCACTGGGCTATGCATTAGGTCTTGCTCTTAGACGTTCTGCTGGTGCTGATCGACCGTGTTCATATTGCCTGAAAGTTTCCCAAACATTCAGGATCAGGTTCATTCGGCGTCATCTGAAGAAGCGGATTGATTCACTGTTGCCGTTACAATATGATTTATTCATTGCTGTTGTAACTCTATTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1045

Amino Acids

118.05

Weight (kDa)

6.02

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2162
AccI	GTMKAC	1 cut(s)	1364
AccII	CGCG	2 cut(s)	2619, 2944
AccIII	TCCGGA	2 cut(s)	26, 2644
AclWI	GGATC	3 cut(s)	2636, 2649, 3047
AcoI	YGGCCR	2 cut(s)	62, 1392
AcsI	RAATTY	2 cut(s)	1601, 2075
AcuI	CTGAAG	6 cut(s)	21, 1518, 1707, 1881, 2575, 3083
AcvI	CACGTG	1 cut(s)	2555
AcyI	GRCGYC	2 cut(s)	2113, 3055
AfaI	GTAC	6 cut(s)	977, 2009, 2027, 2237, 2652, 2906
AfiI	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
AflII	CTTAAG	1 cut(s)	2030
AflIII	ACRYGT	1 cut(s)	2554
AleI	CACNNNNGTG	1 cut(s)	110
Alw21I	GWGCWC	2 cut(s)	1387, 2950
Alw26I	GTCTC	4 cut(s)	887, 984, 1466, 1553
Alw44I	GTGCAC	2 cut(s)	1383, 2946
AlwI	GGATC	3 cut(s)	2636, 2649, 3047
Ama87I	CYCGRG	1 cut(s)	232
Aor13HI	TCCGGA	2 cut(s)	26, 2644
AoxI	GGCC	8 cut(s)	62, 81, 1369, 1392, 1787, 2208, 2419, 2888
ApaI	GGGCCC	2 cut(s)	2212, 2423
ApaLI	GTGCAC	2 cut(s)	1383, 2946
ApeKI	GCWGC	8 cut(s)	290, 374, 542, 605, 626, 665, 1493, 2156
ApoI	RAATTY	2 cut(s)	1601, 2075
Asp700I	GAANNNNTTC	3 cut(s)	34, 1086, 1503
AspLEI	GCGC	2 cut(s)	2619, 2944
AspS9I	GGNCC	9 cut(s)	1336, 1787, 1919, 2208, 2209, 2419, 2420, 2686, 2888
AsuHPI	GGTGA	3 cut(s)	1739, 1907, 2633
AsuII	TTCGAA	1 cut(s)	1483
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	3 cut(s)	1336, 1919, 2686
AxyI	CCTNAGG	1 cut(s)	1791
BaeGI	GKGCMC	4 cut(s)	1387, 2212, 2423, 2950
BalI	TGGCCA	2 cut(s)	64, 1394
BamHI	GGATCC	1 cut(s)	2641
BanI	GGYRCC	1 cut(s)	2162
BanII	GRGCYC	3 cut(s)	233, 2212, 2423
BarI	GAAGNNNNNNTAC	2 cut(s)	1742, 1774
BauI	CACGAG	3 cut(s)	106, 316, 987
BbrPI	CACGTG	1 cut(s)	2555
BbsI	GAAGAC	7 cut(s)	152, 338, 404, 684, 1803, 2330, 2712
Bbv12I	GWGCWC	2 cut(s)	1387, 2950
BbvI	GCAGC	8 cut(s)	277, 361, 529, 613, 617, 652, 1480, 2168
BccI	CCATC	8 cut(s)	706, 842, 1410, 1473, 2044, 2078, 2137, 2146
BceAI	ACGGC	1 cut(s)	3073
BcgI	CGANNNNNNTGC	2 cut(s)	2357, 2391
BclI	TGATCA	2 cut(s)	1117, 2515
BcoDI	GTCTC	4 cut(s)	887, 984, 1466, 1553
BfaI	CTAG	2 cut(s)	1454, 2333
BfmI	CTRYAG	3 cut(s)	979, 2528, 2855
BfrI	CTTAAG	1 cut(s)	2030
BglII	AGATCT	1 cut(s)	2223
BlpI	GCTNAGC	1 cut(s)	2882
Bme18I	GGWCC	3 cut(s)	1336, 1919, 2686
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	9 cut(s)	1336, 1787, 1919, 2208, 2209, 2419, 2420, 2686, 2888
BmrI	ACTGGG	2 cut(s)	2227, 2960
BmsI	GCATC	4 cut(s)	865, 2347, 2397, 2818
BmuI	ACTGGG	2 cut(s)	2227, 2960
BpiI	GAAGAC	7 cut(s)	152, 338, 404, 684, 1803, 2330, 2712
Bpu10I	CCTNAGC	1 cut(s)	2814
Bpu1102I	GCTNAGC	1 cut(s)	2882
Bpu14I	TTCGAA	1 cut(s)	1483
BpuEI	CTTGAG	1 cut(s)	1502
BsaAI	YACGTR	1 cut(s)	2555
BsaHI	GRCGYC	2 cut(s)	2113, 3055
BsaWI	WCCGGW	3 cut(s)	26, 2644, 2935
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
Bse1I	ACTGG	6 cut(s)	647, 1145, 1372, 2233, 2891, 2955
Bse21I	CCTNAGG	1 cut(s)	1791
Bse3DI	GCAATG	1 cut(s)	3108
BseAI	TCCGGA	2 cut(s)	26, 2644
BseGI	GGATG	7 cut(s)	853, 1264, 1465, 1585, 2148, 2362, 2809
BseLI	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
BseMI	GCAATG	1 cut(s)	3108
BseMII	CTCAG	6 cut(s)	629, 668, 1782, 2211, 2805, 2896
BseNI	ACTGG	6 cut(s)	647, 1145, 1372, 2233, 2891, 2955
BseSI	GKGCMC	4 cut(s)	1387, 2212, 2423, 2950
BseXI	GCAGC	8 cut(s)	277, 361, 529, 613, 617, 652, 1480, 2168
BsgI	GTGCAG	1 cut(s)	951
Bsh1236I	CGCG	2 cut(s)	2619, 2944
Bsh1285I	CGRYCG	1 cut(s)	3002
BshFI	GGCC	8 cut(s)	64, 83, 1371, 1394, 1789, 2210, 2421, 2890
BshNI	GGYRCC	1 cut(s)	2162
BsiEI	CGRYCG	1 cut(s)	3002
BsiHKAI	GWGCWC	2 cut(s)	1387, 2950
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	27, 2645, 2936
BslFI	GGGAC	6 cut(s)	1932, 2124, 2491, 2501, 2672, 2765
BslI	CCNNNNNNNGG	4 cut(s)	1892, 1931, 2417, 2745
BsmAI	GTCTC	4 cut(s)	887, 984, 1466, 1553
BsmFI	GGGAC	6 cut(s)	1932, 2124, 2491, 2501, 2672, 2765
BsmI	GAATGC	1 cut(s)	2851
BsnI	GGCC	8 cut(s)	64, 83, 1371, 1394, 1789, 2210, 2421, 2890
BsoBI	CYCGRG	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	1483
Bsp120I	GGGCCC	2 cut(s)	2208, 2419
Bsp1286I	GDGCHC	5 cut(s)	233, 1387, 2212, 2423, 2950
Bsp13I	TCCGGA	2 cut(s)	26, 2644
Bsp1407I	TGTACA	1 cut(s)	2007
Bsp143I	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
Bsp1720I	GCTNAGC	1 cut(s)	2882
BspANI	GGCC	8 cut(s)	64, 83, 1371, 1394, 1789, 2210, 2421, 2890
BspCNI	CTCAG	6 cut(s)	630, 667, 1783, 2212, 2806, 2895
BspEI	TCCGGA	2 cut(s)	26, 2644
BspFNI	CGCG	2 cut(s)	2619, 2944
BspMAI	CTGCAG	1 cut(s)	2532
BspPI	GGATC	3 cut(s)	2636, 2649, 3047
BspQI	GCTCTTC	1 cut(s)	221
BspT104I	TTCGAA	1 cut(s)	1483
BspT107I	GGYRCC	1 cut(s)	2162
BspTI	CTTAAG	1 cut(s)	2030
BsrDI	GCAATG	1 cut(s)	3108
BsrGI	TGTACA	1 cut(s)	2007
BsrI	ACTGG	6 cut(s)	647, 1145, 1372, 2233, 2891, 2955
BssMI	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
BssNI	GRCGYC	2 cut(s)	2113, 3055
BssSI	CACGAG	3 cut(s)	106, 316, 987
BssT1I	CCWWGG	7 cut(s)	65, 411, 569, 1378, 1930, 2092, 2106
Bst2BI	CACGAG	3 cut(s)	106, 316, 987
BstACI	GRCGYC	2 cut(s)	2113, 3055
BstAFI	CTTAAG	1 cut(s)	2030
BstAPI	GCANNNNNTGC	1 cut(s)	2162
BstAUI	TGTACA	1 cut(s)	2007
BstBAI	YACGTR	1 cut(s)	2555
BstBI	TTCGAA	1 cut(s)	1483
BstC8I	GCNNGC	7 cut(s)	7, 11, 2376, 2587, 2740, 2888, 2946
BstDEI	CTNAG	8 cut(s)	638, 654, 1791, 2220, 2456, 2814, 2882, 2975
BstEII	GGTNACC	1 cut(s)	1727
BstENI	CCTNNNNNAGG	1 cut(s)	1929
BstF5I	GGATG	7 cut(s)	853, 1264, 1465, 1585, 2148, 2362, 2809
BstFNI	CGCG	2 cut(s)	2619, 2944
BstHHI	GCGC	2 cut(s)	2619, 2944
BstKTI	GATC	9 cut(s)	865, 986, 1120, 2226, 2371, 2518, 2644, 2998, 3042
BstMAI	GTCTC	4 cut(s)	887, 984, 1466, 1553
BstMBI	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
BstMCI	CGRYCG	1 cut(s)	3002
BstMWI	GCNNNNNNNGC	5 cut(s)	1019, 1391, 2162, 2815, 2887
BstNSI	RCATGY	4 cut(s)	1442, 1543, 2589, 2911
BstPI	GGTNACC	1 cut(s)	1727
BstSFI	CTRYAG	3 cut(s)	979, 2528, 2855
BstSLI	GKGCMC	4 cut(s)	1387, 2212, 2423, 2950
BstUI	CGCG	2 cut(s)	2619, 2944
BstV1I	GCAGC	8 cut(s)	277, 361, 529, 613, 617, 652, 1480, 2168
BstV2I	GAAGAC	7 cut(s)	152, 338, 404, 684, 1803, 2330, 2712
BstX2I	RGATCY	2 cut(s)	2223, 2641
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	2 cut(s)	2223, 2641
Bsu36I	CCTNAGG	1 cut(s)	1791
BsuRI	GGCC	8 cut(s)	64, 83, 1371, 1394, 1789, 2210, 2421, 2890
BtgZI	GCGATG	2 cut(s)	1373, 2504
BtsCI	GGATG	7 cut(s)	853, 1264, 1465, 1585, 2148, 2362, 2809
BtsIMutI	CAGTG	7 cut(s)	635, 654, 993, 1006, 1152, 2948, 3080
Cac8I	GCNNGC	7 cut(s)	7, 11, 2376, 2587, 2740, 2888, 2946
CfoI	GCGC	2 cut(s)	2619, 2944
Cfr13I	GGNCC	9 cut(s)	1336, 1787, 1919, 2208, 2209, 2419, 2420, 2686, 2888
CseI	GACGC	2 cut(s)	2121, 3044
CsiI	ACCWGGT	1 cut(s)	1891
Csp6I	GTAC	6 cut(s)	976, 2008, 2026, 2236, 2651, 2905
CspCI	CAANNNNNGTGG	6 cut(s)	177, 212, 261, 296, 597, 632
CviAII	CATG	7 cut(s)	881, 1439, 1540, 2011, 2252, 2586, 2908
CviQI	GTAC	6 cut(s)	976, 2008, 2026, 2236, 2651, 2905
DdeI	CTNAG	8 cut(s)	638, 654, 1791, 2220, 2456, 2814, 2882, 2975
DpnI	GATC	9 cut(s)	864, 985, 1119, 2225, 2370, 2517, 2643, 2997, 3041
DpnII	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
DraI	TTTAAA	1 cut(s)	2073
EaeI	YGGCCR	2 cut(s)	62, 1392
EciI	GGCGGA	2 cut(s)	36, 120
Eco130I	CCWWGG	7 cut(s)	65, 411, 569, 1378, 1930, 2092, 2106
Eco24I	GRGCYC	3 cut(s)	233, 2212, 2423
Eco32I	GATATC	1 cut(s)	808
Eco47I	GGWCC	3 cut(s)	1336, 1919, 2686
Eco57I	CTGAAG	6 cut(s)	21, 1518, 1707, 1881, 2575, 3083
Eco72I	CACGTG	1 cut(s)	2555
Eco81I	CCTNAGG	1 cut(s)	1791
Eco88I	CYCGRG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	1727
EcoNI	CCTNNNNNAGG	1 cut(s)	1929
EcoO109I	RGGNCCY	3 cut(s)	1919, 2208, 2419
EcoO65I	GGTNACC	1 cut(s)	1727
EcoRI	GAATTC	1 cut(s)	1601
EcoRV	GATATC	1 cut(s)	808
EcoT14I	CCWWGG	7 cut(s)	65, 411, 569, 1378, 1930, 2092, 2106
EcoT22I	ATGCAT	2 cut(s)	2811, 2962
EcoT38I	GRGCYC	3 cut(s)	233, 2212, 2423
ErhI	CCWWGG	7 cut(s)	65, 411, 569, 1378, 1930, 2092, 2106
FaeI	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
FaqI	GGGAC	6 cut(s)	1932, 2124, 2491, 2501, 2672, 2765
FatI	CATG	7 cut(s)	880, 1438, 1539, 2010, 2251, 2585, 2907
FauI	CCCGC	3 cut(s)	748, 2747, 2879
FauNDI	CATATG	1 cut(s)	2413
FbaI	TGATCA	2 cut(s)	1117, 2515
FblI	GTMKAC	1 cut(s)	1364
FokI	GGATG	7 cut(s)	860, 1271, 1452, 1592, 2155, 2369, 2796
FriOI	GRGCYC	3 cut(s)	233, 2212, 2423
FspBI	CTAG	2 cut(s)	1454, 2333
GlaI	GCGC	2 cut(s)	2618, 2943
HaeIII	GGCC	8 cut(s)	64, 83, 1371, 1394, 1789, 2210, 2421, 2890
HapII	CCGG	3 cut(s)	27, 2645, 2936
HgaI	GACGC	2 cut(s)	2121, 3044
HhaI	GCGC	2 cut(s)	2619, 2944
Hin1I	GRCGYC	2 cut(s)	2113, 3055
Hin1II	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
Hin6I	GCGC	2 cut(s)	2617, 2942
HinP1I	GCGC	2 cut(s)	2617, 2942
HincII	GTYRAC	1 cut(s)	1426
HindII	GTYRAC	1 cut(s)	1426
HpaII	CCGG	3 cut(s)	27, 2645, 2936
HphI	GGTGA	3 cut(s)	1739, 1907, 2633
Hpy166II	GTNNAC	5 cut(s)	1365, 1385, 1426, 2008, 2948
Hpy8I	GTNNAC	5 cut(s)	1365, 1385, 1426, 2008, 2948
Hpy99I	CGWCG	2 cut(s)	529, 556
HpyAV	CCTTC	9 cut(s)	73, 919, 1605, 1744, 1771, 1831, 1856, 2309, 2707
HpyCH4IV	ACGT	2 cut(s)	2554, 2980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1019, 1391, 2162, 2815, 2887
HpyF3I	CTNAG	8 cut(s)	638, 654, 1791, 2220, 2456, 2814, 2882, 2975
HpySE526I	ACGT	2 cut(s)	2554, 2980
Hsp92I	GRCGYC	2 cut(s)	2113, 3055
Hsp92II	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
HspAI	GCGC	2 cut(s)	2617, 2942
KflI	GGGWCCC	1 cut(s)	1919
Kpn2I	TCCGGA	2 cut(s)	26, 2644
Ksp22I	TGATCA	2 cut(s)	1117, 2515
Kzo9I	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	4 cut(s)	1335, 1355, 1807, 1825
Lsp1109I	GCAGC	8 cut(s)	277, 361, 529, 613, 617, 652, 1480, 2168
LweI	GCATC	4 cut(s)	865, 2347, 2397, 2818
MabI	ACCWGGT	1 cut(s)	1891
MaeI	CTAG	2 cut(s)	1454, 2333
MaeII	ACGT	2 cut(s)	2554, 2980
MaeIII	GTNAC	8 cut(s)	649, 824, 1408, 1727, 1865, 2773, 3090, 3118
MalI	GATC	9 cut(s)	864, 985, 1119, 2225, 2370, 2517, 2643, 2997, 3041
MboI	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	2 cut(s)	2223, 2641
MhlI	GDGCHC	5 cut(s)	233, 1387, 2212, 2423, 2950
MlsI	TGGCCA	2 cut(s)	64, 1394
MluNI	TGGCCA	2 cut(s)	64, 1394
MlyI	GAGTC	3 cut(s)	646, 1232, 2320
MmeI	TCCRAC	3 cut(s)	575, 816, 2896
Mox20I	TGGCCA	2 cut(s)	64, 1394
Mph1103I	ATGCAT	2 cut(s)	2811, 2962
MroI	TCCGGA	2 cut(s)	26, 2644
MroXI	GAANNNNTTC	3 cut(s)	34, 1086, 1503
MscI	TGGCCA	2 cut(s)	64, 1394
MseI	TTAA	4 cut(s)	1547, 1764, 2031, 2072
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	2 cut(s)	64, 1394
MspA1I	CMGCKG	4 cut(s)	217, 385, 2159, 2886
MspCI	CTTAAG	1 cut(s)	2030
MspI	CCGG	3 cut(s)	27, 2645, 2936
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	2851
MvnI	CGCG	2 cut(s)	2619, 2944
MwoI	GCNNNNNNNGC	5 cut(s)	1019, 1391, 2162, 2815, 2887
NdeI	CATATG	1 cut(s)	2413
NdeII	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
NlaIII	CATG	7 cut(s)	884, 1442, 1543, 2014, 2255, 2589, 2911
NmeAIII	GCCGAG	1 cut(s)	510
NmuCI	GTSAC	4 cut(s)	649, 824, 1727, 2773
NsiI	ATGCAT	2 cut(s)	2811, 2962
NspI	RCATGY	4 cut(s)	1442, 1543, 2589, 2911
NspV	TTCGAA	1 cut(s)	1483
OliI	CACNNNNGTG	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	2589
PasI	CCCWGGG	1 cut(s)	2655
PciSI	GCTCTTC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 482
PctI	GAATGC	1 cut(s)	2851
PdmI	GAANNNNTTC	3 cut(s)	34, 1086, 1503
PfeI	GAWTC	9 cut(s)	565, 689, 852, 1286, 1682, 1768, 2088, 2536, 3077
PflFI	GACNNNGTC	1 cut(s)	995
PfoI	TCCNGGA	1 cut(s)	1332
PleI	GAGTC	3 cut(s)	646, 1232, 2320
PmaCI	CACGTG	1 cut(s)	2555
PmlI	CACGTG	1 cut(s)	2555
PpsI	GAGTC	3 cut(s)	646, 1232, 2320
Ppu21I	YACGTR	1 cut(s)	2555
PpuMI	RGGWCCY	1 cut(s)	1919
Psp5II	RGGWCCY	1 cut(s)	1919
PspCI	CACGTG	1 cut(s)	2555
PspEI	GGTNACC	1 cut(s)	1727
PspOMI	GGGCCC	2 cut(s)	2208, 2419
PspPI	GGNCC	9 cut(s)	1336, 1787, 1919, 2208, 2209, 2419, 2420, 2686, 2888
PspPPI	RGGWCCY	1 cut(s)	1919
PstI	CTGCAG	1 cut(s)	2532
PsuI	RGATCY	2 cut(s)	2223, 2641
PsyI	GACNNNGTC	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	2159
RsaI	GTAC	6 cut(s)	977, 2009, 2027, 2237, 2652, 2906
RsaNI	GTAC	6 cut(s)	976, 2008, 2026, 2236, 2651, 2905
RseI	CAYNNNNRTG	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	4 cut(s)	1547, 1764, 2031, 2072
Sau3AI	GATC	9 cut(s)	862, 983, 1117, 2223, 2368, 2515, 2641, 2995, 3039
Sau96I	GGNCC	9 cut(s)	1336, 1787, 1919, 2208, 2209, 2419, 2420, 2686, 2888
SchI	GAGTC	3 cut(s)	646, 1232, 2320
SduI	GDGCHC	5 cut(s)	233, 1387, 2212, 2423, 2950
SexAI	ACCWGGT	1 cut(s)	1891
SfaNI	GCATC	4 cut(s)	865, 2347, 2397, 2818
SfcI	CTRYAG	3 cut(s)	979, 2528, 2855
SfuI	TTCGAA	1 cut(s)	1483
SinI	GGWCC	3 cut(s)	1336, 1919, 2686
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	1517, 2030
SmoI	CTYRAG	2 cut(s)	1517, 2030
SphI	GCATGC	1 cut(s)	2589
SspMI	CTAG	2 cut(s)	1454, 2333
StyI	CCWWGG	7 cut(s)	65, 411, 569, 1378, 1930, 2092, 2106
TaiI	ACGT	2 cut(s)	2557, 2983
TaqI	TCGA	8 cut(s)	20, 56, 140, 224, 476, 1483, 2064, 2998
TatI	WGTACW	1 cut(s)	2007
TauI	GCSGC	2 cut(s)	443, 671
TfiI	GAWTC	9 cut(s)	565, 689, 852, 1286, 1682, 1768, 2088, 2536, 3077
Tru1I	TTAA	4 cut(s)	1547, 1764, 2031, 2072
Tru9I	TTAA	4 cut(s)	1547, 1764, 2031, 2072
TscAI	CASTG	7 cut(s)	642, 654, 1000, 1013, 1152, 2955, 3087
TseFI	GTSAC	4 cut(s)	649, 824, 1727, 2773
TseI	GCWGC	8 cut(s)	290, 374, 542, 605, 626, 665, 1493, 2156
Tsp45I	GTSAC	4 cut(s)	649, 824, 1727, 2773
TspGWI	ACGGA	2 cut(s)	696, 2174
TspRI	CASTG	7 cut(s)	642, 654, 1000, 1013, 1152, 2955, 3087
Tth111I	GACNNNGTC	1 cut(s)	995
Vha464I	CTTAAG	1 cut(s)	2030
VneI	GTGCAC	2 cut(s)	1383, 2946
VpaK11BI	GGWCC	3 cut(s)	1336, 1919, 2686
XagI	CCTNNNNNAGG	1 cut(s)	1929
XapI	RAATTY	2 cut(s)	1601, 2075
XbaI	TCTAGA	1 cut(s)	1453
XceI	RCATGY	4 cut(s)	1442, 1543, 2589, 2911
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1937, 2662
XmiI	GTMKAC	1 cut(s)	1364
XmnI	GAANNNNTTC	3 cut(s)	34, 1086, 1503
XspI	CTAG	2 cut(s)	1454, 2333
Zsp2I	ATGCAT	2 cut(s)	2811, 2962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.