Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

56659681 .. 56666468

Gene Structure 6788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG421200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGCGCCTCCCGCCTCGGCTCCGGAACCTAAGAAGTCGAAGAGAACCAAGCCGAAGGCAGGTCCTTGTTCCATTGTCGTCGACGGCCCGGAGCCTACTTTCGTCGGCGAACCGCTTACCGACGAGGAGGCTCGGCGGAGATGGCCCGAATCGTACCGAAAGGTTAGGGTTTCTGTTCGCTGTGGAGAAGCAAGTTGCTAGACCAATCAGCTCTAAGGGAGATGAAGATTCTCTTCAGGCTCGTTCTCACTTTACAATGGCTGAAGTGGATGGTATAAGATATGATCTATATGATGATGCTCATGTTCTGGCTGGAGAAGGAGAGCCACCATACATTTGCAAGATAGTTGAGATGTTTGAGGCAGTTGATGGGCAGTTATATTTTACAGCTCAATGGTACTACCGAGTACAAGACACTGTCGTCAAAGACTGTGTTGAGATTGATAGTAGACGCGTTTTCTTCTCAGATGTGAAGGACCGCAATCCTTTGGAATGTCTTCTTGAAAAGATTACTATTGTTAGATTGGCTCTAAATGTTGATCCTGATGTTAAGAACAAACTTATTCAAGAGTGCAAGTATTATTGTGACACCAAATACTTGTTGCCTCATTCAACTTTTGTCAATTTACTACCAGAAAATATGCAATCGGGAAGTCATATTCCATCAACAATTTCAAGTGGGGTTGTTGGTGAATCTTGTCATGTTAACTCAGAACTTACGAAAAGCTCCATAGTCAGGGAGCAATGCTTACAAGAACTTAAATTGCTGGACTTATATGCTGGGTGTGGTGGGATGTCAACTGGCCTATGTTTGGGTGCCCGATTATCCAACGTAAATCTTGTCACAAGATGGGCTGTTGATATAAATGAATATGCGCTCAAAAGTCTAAAGCTTAATCATCCAGAAACTGAGGTTAGAAAGGAATATGCGGAAAACTTTCTGATTTTGCTCAAGAAGTGGAAGGGACTATGCATTTCTTTTAACTTGGTTGAGGGTGACAATTCAGAGATACCGGTCAATTTCTTTGCAACAAATGACCCTTCAGATGAAGAAGAGGATGACGACCAGAATAAGGATAATGCTGAAGATTCTGAGGTTTATGAAGTCGAAAAAATACTTGATATATGTTATGGGGAACCAGAAGAGAAAGATAGGGGGCTGTACTTCAAGGTTCATTGGAAGGGCTATGGTTCAGATGAAGATACTTGGGAGCCTATTGAGTCACTGAGGGATTGCAAGGATAGTGTACAAGAATTTGTTTCTCGTGGCTTCAGATCAAAAATGTTGCCGTTACCTGGAGATGTTGATGTGGTGTGTGGTGGACCACCTTGCCAGGGAATAAGCGGATTCAACCGATTTAGGGACAAGGAAAATCCTTTGAATGATAAGAAAAATGAACAGGTGGTTGTTTTCATGGACATAATTCAATACCTTAAGCCTAAGTATGTCTTGATGGAAAATGTGGTCGACCTTTTGAAATTTGCGGAAGGATTCCTTGGGCGATATGCCATTGGACGTCTTGTTGATATGAACTATCAGGCAAGGATTGGTATGATGTGTGCAGGAGCATATGGTCTTCCTCAATTCCGTATGCGGGTTTTTCTATGGGGGGCCTGTCCTACTGAGCGGTTGCCACAATACCCACTTCCTACCCATGATGTTGTTGTCAAGGGTCATACTCCAACTGAATGGGAGGAGAATGCAGTTTGTAGTGAAGGGCATCAATCTACATTGAAAGAAAAGCTCTTTTTGGAGGATGCTCTATCTGACCTTCCTGCTGTAAATAATAATGAGTGTCGTGATGAGATGCCATATGGAAGTCCCCCCCAGACTGAGTTCCAGAAGATGATTAGACTTAGCAGAAACTATTTATTGGGATCTTCAAAGAGTGAGCCTTATAATGTGATGCTATATGATCACCAGCCTTTGACAGTGAATGCTGACGATTATGCTCGTATATGTCGCATTCCCAAAGAGAAGGGTGCGAATTTTAGAAACCTAACTGGTGTTCGAGTGCGTCCTGATAAAAAAGTTGAATGGAATCCTGATGTAGACAGGGTTTATTTGGACTCTGGCGCTCCTTTGGTCCCTGACTATGCTATGTCATTTGTGAAAGGGAAATCATCAAAACCGTTCGGACGTTTGTGGTGGGACGAAATAGTGTCCACCGTTGTCACTCGGGCCGAGCCCCACAATCAGGCTATCTTGCATCCTGATCAAGACAGAGTATTGACTATACGTGAAAATGCAAGGTTGCAAGGCTTTCCTGATTATTACAAACTCTGCGGGCCAGTTAAAGAAAGATACATTCAAGTTGGGAATGCCGTAGCAGTTCCTGTCGCGCGTGCTCTGGGATATGCACTAGGGCGTGCTCTCAATGGTTTAGTTGATCATCGTTCTATGTTTGAGTTGCCTGATGGGTTCCCCAATCATCTGGAAGAGATTCCTTCTCCAGAAGTTAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

822

Amino Acids

93.5

Weight (kDa)

5.44

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	106 - 199	1.6e-10	BAH domain
Chromo	PF00385	367 - 422	1.1e-13	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	431 - 788	7.6e-33	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1899
AasI	GACNNNNNNGTC	1 cut(s)	419
AatII	GACGTC	1 cut(s)	1519
Acc36I	ACCTGC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	815
AccBSI	CCGCTC	1 cut(s)	1627
AccI	GTMKAC	4 cut(s)	80, 448, 1467, 2052
AccII	CGCG	3 cut(s)	453, 2342, 2344
AccIII	TCCGGA	1 cut(s)	21
AclWI	GGATC	2 cut(s)	533, 1885
AcsI	RAATTY	3 cut(s)	1253, 1478, 1987
AcuI	CTGAAG	5 cut(s)	218, 282, 1026, 1104, 1255
AcyI	GRCGYC	1 cut(s)	1516
AfaI	GTAC	5 cut(s)	154, 398, 408, 1163, 1248
AfiI	CCNNNNNNNGG	9 cut(s)	58, 735, 811, 1072, 1295, 1334, 1360, 1594, 2197
AflII	CTTAAG	1 cut(s)	1433
AflIII	ACRYGT	1 cut(s)	451
AgeI	ACCGGT	1 cut(s)	1012
AjnI	CCWGG	2 cut(s)	1294, 1332
AjuI	GAANNNNNNNTTGG	2 cut(s)	1479, 1511
AluBI	AGCT	5 cut(s)	210, 389, 726, 892, 1744
AluI	AGCT	5 cut(s)	210, 389, 726, 892, 1744
Alw21I	GWGCWC	2 cut(s)	2350, 2374
AlwI	GGATC	2 cut(s)	533, 1885
AlwNI	CAGNNNCTG	2 cut(s)	908, 2336
Ama87I	CYCGRG	1 cut(s)	2178
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	6 cut(s)	84, 142, 802, 1611, 2181, 2288
ApoI	RAATTY	3 cut(s)	1253, 1478, 1987
AsiGI	ACCGGT	1 cut(s)	1012
Asp700I	GAANNNNTTC	3 cut(s)	495, 936, 2442
AspLEI	GCGC	4 cut(s)	6, 877, 2078, 2344
AspS9I	GGNCC	9 cut(s)	61, 85, 143, 475, 1322, 1611, 2086, 2181, 2288
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	701, 1007, 1910
AvaI	CYCGRG	1 cut(s)	2178
AvaII	GGWCC	4 cut(s)	61, 475, 1322, 2086
BaeGI	GKGCMC	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	2190
BauI	CACGAG	1 cut(s)	1263
BbsI	GAAGAC	2 cut(s)	488, 1568
Bbv12I	GWGCWC	2 cut(s)	2350, 2374
BccI	CCATC	7 cut(s)	134, 263, 362, 670, 843, 1447, 2411
BceAI	ACGGC	3 cut(s)	99, 1273, 2309
BciT130I	CCWGG	2 cut(s)	1296, 1334
BclI	TGATCA	3 cut(s)	1915, 2215, 2389
BcnI	CCSGG	1 cut(s)	88
BfaI	CTAG	2 cut(s)	198, 2363
BfoI	RGCGCY	1 cut(s)	2079
BfrI	CTTAAG	1 cut(s)	1433
BfuAI	ACCTGC	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	88, 1296, 1334
Bme18I	GGWCC	4 cut(s)	61, 475, 1322, 2086
BmeT110I	CYCGRG	1 cut(s)	2178
BmgT120I	GGNCC	9 cut(s)	61, 85, 143, 475, 1322, 1611, 2086, 2181, 2288
BmiI	GGNNCC	9 cut(s)	20, 26, 92, 817, 1137, 1212, 1612, 2088, 2423
BmrFI	CCNGG	3 cut(s)	88, 1296, 1334
BmsI	GCATC	6 cut(s)	286, 1729, 1747, 1797, 1896, 2218
BpiI	GAAGAC	2 cut(s)	488, 1568
BpmI	CTGGAG	3 cut(s)	333, 1317, 2436
BpuEI	CTTGAG	1 cut(s)	935
BpuMI	CCSGG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	2240
BsaHI	GRCGYC	1 cut(s)	1516
BsaJI	CCNNGG	3 cut(s)	14, 1333, 1495
BsaWI	WCCGGW	2 cut(s)	21, 1012
Bsc4I	CCNNNNNNNGG	9 cut(s)	58, 735, 811, 1072, 1295, 1334, 1360, 1594, 2197
Bse118I	RCCGGY	1 cut(s)	1012
Bse1I	ACTGG	3 cut(s)	805, 2008, 2291
Bse3DI	GCAATG	1 cut(s)	749
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	1296, 1334
BseDI	CCNNGG	3 cut(s)	14, 1333, 1495
BseGI	GGATG	6 cut(s)	274, 798, 898, 1063, 1762, 2209
BseLI	CCNNNNNNNGG	9 cut(s)	58, 735, 811, 1072, 1295, 1334, 1360, 1594, 2197
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	7 cut(s)	477, 723, 900, 1083, 1217, 1614, 1824
BseNI	ACTGG	3 cut(s)	805, 2008, 2291
BseRI	GAGGAG	2 cut(s)	139, 1709
BseSI	GKGCMC	1 cut(s)	820
BseYI	CCCAGC	1 cut(s)	779
BsgI	GTGCAG	1 cut(s)	1581
Bsh1236I	CGCG	3 cut(s)	453, 2342, 2344
BshFI	GGCC	6 cut(s)	86, 144, 804, 1613, 2183, 2290
BshNI	GGYRCC	1 cut(s)	815
BshTI	ACCGGT	1 cut(s)	1012
BsiHKAI	GWGCWC	2 cut(s)	2350, 2374
BsiHKCI	CYCGRG	1 cut(s)	2178
BsiSI	CCGG	3 cut(s)	22, 88, 1013
BslFI	GGGAC	5 cut(s)	978, 1376, 1806, 2072, 2165
BslI	CCNNNNNNNGG	9 cut(s)	58, 735, 811, 1072, 1295, 1334, 1360, 1594, 2197
BsmFI	GGGAC	5 cut(s)	978, 1376, 1806, 2072, 2165
BsmI	GAATGC	4 cut(s)	1705, 1942, 1965, 2326
BsnI	GGCC	6 cut(s)	86, 144, 804, 1613, 2183, 2290
BsoBI	CYCGRG	1 cut(s)	2178
Bsp1286I	GDGCHC	4 cut(s)	820, 2190, 2350, 2374
Bsp13I	TCCGGA	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	1246
Bsp143I	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
BspANI	GGCC	6 cut(s)	86, 144, 804, 1613, 2183, 2290
BspCNI	CTCAG	7 cut(s)	476, 722, 901, 1084, 1218, 1615, 1825
BspEI	TCCGGA	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	453, 2342, 2344
BspLI	GGNNCC	9 cut(s)	20, 26, 92, 817, 1137, 1212, 1612, 2088, 2423
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	2 cut(s)	533, 1885
BspT107I	GGYRCC	1 cut(s)	815
BspTI	CTTAAG	1 cut(s)	1433
BsrBI	CCGCTC	1 cut(s)	1627
BsrDI	GCAATG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	1012
BsrGI	TGTACA	1 cut(s)	1246
BsrI	ACTGG	3 cut(s)	805, 2008, 2291
BssAI	RCCGGY	1 cut(s)	1012
BssECI	CCNNGG	3 cut(s)	14, 1333, 1495
BssMI	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
BssNI	GRCGYC	1 cut(s)	1516
BssSI	CACGAG	1 cut(s)	1263
BssT1I	CCWWGG	1 cut(s)	1495
Bst2BI	CACGAG	1 cut(s)	1263
Bst2UI	CCWGG	2 cut(s)	1296, 1334
Bst4CI	ACNGT	5 cut(s)	418, 431, 1933, 2133, 2170
Bst6I	CTCTTC	5 cut(s)	34, 237, 1047, 1137, 2433
BstACI	GRCGYC	1 cut(s)	1516
BstAFI	CTTAAG	1 cut(s)	1433
BstAUI	TGTACA	1 cut(s)	1246
BstBAI	YACGTR	1 cut(s)	2240
BstC8I	GCNNGC	3 cut(s)	2288, 2346, 2370
BstF5I	GGATG	6 cut(s)	274, 798, 898, 1063, 1762, 2209
BstFNI	CGCG	3 cut(s)	453, 2342, 2344
BstH2I	RGCGCY	1 cut(s)	2079
BstHHI	GCGC	4 cut(s)	6, 877, 2078, 2344
BstKTI	GATC	7 cut(s)	286, 541, 1277, 1880, 1918, 2218, 2392
BstMBI	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 141
BstNI	CCWGG	2 cut(s)	1296, 1334
BstSCI	CCNGG	3 cut(s)	86, 1294, 1332
BstSLI	GKGCMC	1 cut(s)	820
BstUI	CGCG	3 cut(s)	453, 2342, 2344
BstV2I	GAAGAC	2 cut(s)	488, 1568
BstX2I	RGATCY	1 cut(s)	1877
BstXI	CCANNNNNNTGG	2 cut(s)	1689, 2434
BstYI	RGATCY	1 cut(s)	1877
BsuRI	GGCC	6 cut(s)	86, 144, 804, 1613, 2183, 2290
BtsCI	GGATG	6 cut(s)	274, 798, 898, 1063, 1762, 2209
BtsIMutI	CAGTG	3 cut(s)	414, 1223, 1938
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	2288, 2346, 2370
CaiI	CAGNNNCTG	2 cut(s)	908, 2336
CfoI	GCGC	4 cut(s)	6, 877, 2078, 2344
Cfr10I	RCCGGY	1 cut(s)	1012
Cfr13I	GGNCC	9 cut(s)	61, 85, 143, 475, 1322, 1611, 2086, 2181, 2288
CseI	GACGC	2 cut(s)	459, 2006
Csp6I	GTAC	5 cut(s)	153, 397, 407, 1162, 1247
CspAI	ACCGGT	1 cut(s)	1012
CviAII	CATG	4 cut(s)	302, 701, 1414, 1655
CviQI	GTAC	5 cut(s)	153, 397, 407, 1162, 1247
DpnI	GATC	7 cut(s)	285, 540, 1276, 1879, 1917, 2217, 2391
DpnII	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eam1104I	CTCTTC	5 cut(s)	34, 237, 1047, 1137, 2433
EarI	CTCTTC	5 cut(s)	34, 237, 1047, 1137, 2433
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	1495
Eco24I	GRGCYC	1 cut(s)	2190
Eco47I	GGWCC	4 cut(s)	61, 475, 1322, 2086
Eco57I	CTGAAG	5 cut(s)	218, 282, 1026, 1104, 1255
Eco88I	CYCGRG	1 cut(s)	2178
EcoO109I	RGGNCCY	2 cut(s)	61, 1611
EcoRII	CCWGG	2 cut(s)	1294, 1332
EcoT14I	CCWWGG	1 cut(s)	1495
EcoT22I	ATGCAT	1 cut(s)	974
EcoT38I	GRGCYC	1 cut(s)	2190
ErhI	CCWWGG	1 cut(s)	1495
FaeI	CATG	4 cut(s)	305, 704, 1417, 1658
FalI	AAGNNNNNCTT	6 cut(s)	216, 248, 1433, 1465, 1479, 1511
FaqI	GGGAC	5 cut(s)	978, 1376, 1806, 2072, 2165
FatI	CATG	4 cut(s)	301, 700, 1413, 1654
FauI	CCCGC	3 cut(s)	18, 1587, 2279
FauNDI	CATATG	2 cut(s)	1570, 1813
FbaI	TGATCA	3 cut(s)	1915, 2215, 2389
FblI	GTMKAC	4 cut(s)	80, 448, 1467, 2052
FokI	GGATG	6 cut(s)	281, 805, 885, 1070, 1769, 2196
FriOI	GRGCYC	1 cut(s)	2190
FspBI	CTAG	2 cut(s)	198, 2363
GlaI	GCGC	4 cut(s)	5, 876, 2077, 2343
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	3 cut(s)	333, 1317, 2436
HaeII	RGCGCY	1 cut(s)	2079
HaeIII	GGCC	6 cut(s)	86, 144, 804, 1613, 2183, 2290
HapII	CCGG	3 cut(s)	22, 88, 1013
HgaI	GACGC	2 cut(s)	459, 2006
HhaI	GCGC	4 cut(s)	6, 877, 2078, 2344
Hin1I	GRCGYC	1 cut(s)	1516
Hin1II	CATG	4 cut(s)	305, 704, 1417, 1658
Hin6I	GCGC	4 cut(s)	4, 875, 2076, 2342
HinP1I	GCGC	4 cut(s)	4, 875, 2076, 2342
HincII	GTYRAC	4 cut(s)	81, 706, 798, 1468
HindII	GTYRAC	4 cut(s)	81, 706, 798, 1468
HindIII	AAGCTT	1 cut(s)	890
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	3 cut(s)	22, 88, 1013
HphI	GGTGA	3 cut(s)	701, 1007, 1910
Hpy166II	GTNNAC	9 cut(s)	81, 449, 706, 798, 1247, 1322, 1468, 2053, 2166
Hpy8I	GTNNAC	9 cut(s)	81, 449, 706, 798, 1247, 1322, 1468, 2053, 2166
Hpy99I	CGWCG	4 cut(s)	82, 85, 106, 124
HpyCH4III	ACNGT	5 cut(s)	418, 431, 1933, 2133, 2170
HpyCH4IV	ACGT	4 cut(s)	831, 1516, 2140, 2239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 141
HpySE526I	ACGT	4 cut(s)	831, 1516, 2140, 2239
Hsp92I	GRCGYC	1 cut(s)	1516
Hsp92II	CATG	4 cut(s)	305, 704, 1417, 1658
HspAI	GCGC	4 cut(s)	4, 875, 2076, 2342
Kpn2I	TCCGGA	1 cut(s)	21
Ksp22I	TGATCA	3 cut(s)	1915, 2215, 2389
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
LmnI	GCTCC	7 cut(s)	24, 90, 731, 739, 1210, 1565, 2083
LweI	GCATC	6 cut(s)	286, 1729, 1747, 1797, 1896, 2218
MaeI	CTAG	2 cut(s)	198, 2363
MaeII	ACGT	4 cut(s)	831, 1516, 2140, 2239
MaeIII	GTNAC	6 cut(s)	584, 841, 995, 1221, 1290, 2173
MalI	GATC	7 cut(s)	285, 540, 1276, 1879, 1917, 2217, 2391
MbiI	CCGCTC	1 cut(s)	1627
MboI	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
MflI	RGATCY	1 cut(s)	1877
MhlI	GDGCHC	4 cut(s)	820, 2190, 2350, 2374
MluI	ACGCGT	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	1229, 2063
MmeI	TCCRAC	2 cut(s)	852, 1706
Mph1103I	ATGCAT	1 cut(s)	974
MroI	TCCGGA	1 cut(s)	21
MroXI	GAANNNNTTC	3 cut(s)	495, 936, 2442
MseI	TTAA	7 cut(s)	549, 705, 759, 894, 981, 1434, 2295
MspCI	CTTAAG	1 cut(s)	1433
MspI	CCGG	3 cut(s)	22, 88, 1013
MspR9I	CCNGG	3 cut(s)	88, 1296, 1334
Mva1269I	GAATGC	4 cut(s)	1705, 1942, 1965, 2326
MvaI	CCWGG	2 cut(s)	1296, 1334
MvnI	CGCG	3 cut(s)	453, 2342, 2344
MwoI	GCNNNNNNNGC	2 cut(s)	10, 141
NciI	CCSGG	1 cut(s)	88
NdeI	CATATG	2 cut(s)	1570, 1813
NdeII	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
NlaIII	CATG	4 cut(s)	305, 704, 1417, 1658
NlaIV	GGNNCC	9 cut(s)	20, 26, 92, 817, 1137, 1212, 1612, 2088, 2423
NmeAIII	GCCGAG	2 cut(s)	111, 2209
NmuCI	GTSAC	5 cut(s)	584, 841, 995, 1221, 2173
NsiI	ATGCAT	1 cut(s)	974
PctI	GAATGC	4 cut(s)	1705, 1942, 1965, 2326
PdmI	GAANNNNTTC	3 cut(s)	495, 936, 2442
PfeI	GAWTC	8 cut(s)	148, 227, 692, 1088, 1347, 1491, 2041, 2443
PflFI	GACNNNGTC	1 cut(s)	416
PinAI	ACCGGT	1 cut(s)	1012
PleI	GAGTC	2 cut(s)	1228, 2063
PpsI	GAGTC	2 cut(s)	1228, 2063
Ppu21I	YACGTR	1 cut(s)	2240
PpuMI	RGGWCCY	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	1899
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	1294, 1332
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	2 cut(s)	1294, 1332
PspN4I	GGNNCC	9 cut(s)	20, 26, 92, 817, 1137, 1212, 1612, 2088, 2423
PspPI	GGNCC	9 cut(s)	61, 85, 143, 475, 1322, 1611, 2086, 2181, 2288
PspPPI	RGGWCCY	1 cut(s)	61
PstNI	CAGNNNCTG	2 cut(s)	908, 2336
PsuI	RGATCY	1 cut(s)	1877
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	5 cut(s)	154, 398, 408, 1163, 1248
RsaNI	GTAC	5 cut(s)	153, 397, 407, 1162, 1247
SalI	GTCGAC	2 cut(s)	79, 1466
SaqAI	TTAA	7 cut(s)	549, 705, 759, 894, 981, 1434, 2295
Sau3AI	GATC	7 cut(s)	283, 538, 1274, 1877, 1915, 2215, 2389
Sau96I	GGNCC	9 cut(s)	61, 85, 143, 475, 1322, 1611, 2086, 2181, 2288
SchI	GAGTC	2 cut(s)	1229, 2063
ScrFI	CCNGG	3 cut(s)	88, 1296, 1334
SduI	GDGCHC	4 cut(s)	820, 2190, 2350, 2374
SfaNI	GCATC	6 cut(s)	286, 1729, 1747, 1797, 1896, 2218
SgrDI	CGTCGACG	1 cut(s)	79
SinI	GGWCC	4 cut(s)	61, 475, 1322, 2086
SmlI	CTYRAG	2 cut(s)	950, 1433
SmoI	CTYRAG	2 cut(s)	950, 1433
SspMI	CTAG	2 cut(s)	198, 2363
StyD4I	CCNGG	3 cut(s)	86, 1294, 1332
StyI	CCWWGG	1 cut(s)	1495
TaaI	ACNGT	5 cut(s)	418, 431, 1933, 2133, 2170
TaiI	ACGT	4 cut(s)	834, 1519, 2143, 2242
TaqI	TCGA	5 cut(s)	37, 80, 1107, 1467, 2011
TatI	WGTACW	3 cut(s)	406, 1161, 1246
TfiI	GAWTC	8 cut(s)	148, 227, 692, 1088, 1347, 1491, 2041, 2443
Tru1I	TTAA	7 cut(s)	549, 705, 759, 894, 981, 1434, 2295
Tru9I	TTAA	7 cut(s)	549, 705, 759, 894, 981, 1434, 2295
TscAI	CASTG	3 cut(s)	421, 1230, 1938
TseFI	GTSAC	5 cut(s)	584, 841, 995, 1221, 2173
Tsp45I	GTSAC	5 cut(s)	584, 841, 995, 1221, 2173
TspDTI	ATGAA	9 cut(s)	237, 882, 1062, 1116, 1163, 1212, 1402, 1410, 1544
TspGWI	ACGGA	1 cut(s)	1577
TspRI	CASTG	3 cut(s)	421, 1230, 1938
Tth111I	GACNNNGTC	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	1433
VpaK11BI	GGWCC	4 cut(s)	61, 475, 1322, 2086
XapI	RAATTY	3 cut(s)	1253, 1478, 1987
XmiI	GTMKAC	4 cut(s)	80, 448, 1467, 2052
XmnI	GAANNNNTTC	3 cut(s)	495, 936, 2442
XspI	CTAG	2 cut(s)	198, 2363
ZraI	GACGTC	1 cut(s)	1517
Zsp2I	ATGCAT	1 cut(s)	974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.