Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

858808 .. 864457

Gene Structure 5650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G001030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGGCCACCAAGCGCAAGTCGAAGCGATCTCCGGCTTCTTCTTCCGCCGCGAAGAAGCTGAAGCAGGGGGAGAAAGATGTCTTTTTGCCGGAGAGTAGTGAAATCGAAACCGAAACCGAAACCTCAACGGCGACGAAGGCGAAGCCGAAGCGATCTAAGGCTGGATCTTCATCCGCATCTGCGAAGTTGAAGGAGCCGGCGGTGGAGGAAGAGTCGGTACTGGAGAGTACCGAAACGGCCGAGAAGGTTTCGGAGAGTAGCGAAACGGCTACAATGGAGGCGAGTGTGCCCAAGTCGAGGAAGTACAGTAAGAAGGAGAGTAAGGGGAGCGGTGGTTCTCAGGCTAATAATGTGGCTGATGAGGATGTGGTGATGTCTGAGGCTAGGTTTCTCGGTGAGCCGGTTGAACCGGAGGAGGCTCGCCGGAGATGGCCCCACCGATATGCTACTCCTCGGACTCAGAAGAAGGCAAACAACTCCAACGACGATGAAGATTTTCATGAGGGTCGTCGACACTTCACAAAGGCAGAGGTTGATGGATGCATCTATGATCTTTATGATGATGCACATGTAAAAGCCGGCAAAGGAGAACAGCCTTACATTTGTAAAATTATAGAGATGTTTGAGGCAGTTGATGGGCTACCCTATTTTACTGCTCAGTGGTTCTACAGAGCGAAAGATACTGTCATAGAAGGTTGCTTCGATATTGATTCAAGGCGTGTATTTTATTCAGATGTTACAAATTACAATGAGTTGGAATGTCTCCTTGGGAAACTGGATATTGCGAGATTCGGTTTAGATATTGACCCTGATGTAAAGTGCAAACTGATTGAGAGCTGTACCTATTATTGCGACACTAAATATCTGTTGCCTTATTCCACCTTTGTCAACTTCCCACCTGAAAATGTGCAGGCTGGAAGTGATAACTCATCAACAATTTCCAGTGAGATTGACATTAGCTGTTCTCGTGCGGTTAACTCGGAACTTGAAAAAACTTCCACAGTTGTGGAGCAAGGCAAACCAGAAGCAACTGTACTTGACTTGTATTCTGGTTGTGGAGGGATGTCTACTGGCCTATGCCTTGGGGCAAACTCGGCAAACTTAAATCTTGTTACGAGATGGGCTGTGGATCTGAATGAACATGCTATAAAAAGTCTGAAGATAAACCATGAAGAAACTGAGGTTCGGGTAGAATCTGCGGATGATTTTCTCTCATTGCTGAAAAAGTGGAAGGGACTTTGTGTTCATTTTAAAGTGGTTAAACCTGATGGTTCAGAAACACCGTTCAGTGTATTCACAACAAAAGATGCCAAAGAGGAAGAGGAGGATGTGGAGGCAGAGGATGATGATGATGATGATGCAGAATCTGAAGTTTATGAAGTTGAAAAAATACTTGGTATACGTTATGGAAAAGCCAAAAATGGAGAAGAGAAGGAATTGTTGTTTAAGGTCAAATGGAAAGGATATGGAGCTGAGTATGATACTTGGGAGCCCCTAGGTTTACTAACGGGTTGTGAGGAGAGCATACAGGAATTTGTTTCTCATGTATACCAGTCCAAACTGTTGCCATTACCTGGTGATGTGGATGTTGTGTGTGGTGGTCCTCCATGCCAAGGAATTAGTGGTTTCAATAGGTTCAGGAACTCTGAAAGTCCATTAGATGACGAGAAGAACAAGCAATTGGCTGTCTTCATGGACATAGTAGATTATCTAAAGCCCAAGTATGTGCTGATGGAAAATGTAGTGGATCTTTTGAAATTTGCTGATGGGTTTTTAGGACGGATGGGTATGATGTGCGCAGGTGCATATGGTCTACCTCAATTCCGTATGCGGGTATTTTATTGGGGGGCCCTTCCTACTGAGAGGTTGCCTCAATTCCCACTGCCAACCCATGATGTAGTGTTTAGGGGCCAGATTCCTACTAAGTGGGAGCAAAACTGTGTTGCTTACAATGAAGGCCATGATCATACATTGGGAAGAAAGCTTTTGTTGGAGGATGCACTCTCAGATCTTCCCGAGGTTGGAAACAATGAAAACCGTGACATAATGCCTTATGGAAAGCAACCTCAGACAGAGTTTCAGAAATTTATTCGGCTTAGCAAAGACGGTTTTCTAGGGACTTCAAAGAAGTTGCACTCAAATGAGATGCTTTTTGATCACCGCCCTCTGAAATTGAATGCTGATGATCATGAACGTGTTTGTCGTGTCCCTAAGGAAAAGGGTGCGAACTTTAGGAATCTACCTGGGGTTCTTGTTGGTGCTGATAATAAAGTAATGTGGGATCCAGAAGTAGAGAGGGTTTTATTAAAATCTGGGAAACCTTTGGTCCCTGATTATGCAATGTCATTTGTGAAAGGACATTCATCAAAACCTTTTGGACGTTTATGGTGGGATGAGATTGTTTCCACAGTTGTTACCCGGGCCGAGCCGCATAATCAGGCAATTTTGCATCCTCAACAAGATCGGGTATTGACAGTTCGTGAAAATGCAAGACTACAAGGATTTCCTGACTACTACCAGCTTTCTGGCCCAATCAAAGAGAGATATATGCAAATTGGAAATGCTGTAGCTGTTCCTGTTTCACGTGCATTGGGTTACACATTAGGTTTGGCATATAAGGGTTCTGCTGGTGAGGATTCTTTGTTTGAGCTGCCCAAAGAAATGCATTTGCCTAACGGATGTTTTGAAGACGGAGATTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

901

Amino Acids

101.04

Weight (kDa)

5.16

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	195 - 263	1.9e-07	BAH domain
Chromo	PF00385	459 - 514	2.1e-13	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	523 - 867	2.2e-26	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1790
Acc16I	TGCGCA	1 cut(s)	1798
Acc36I	ACCTGC	1 cut(s)	1790
AccB7I	CCANNNNNTGG	1 cut(s)	1574
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	5 cut(s)	511, 1067, 1399, 1548, 1813
AccII	CGCG	1 cut(s)	50
AclWI	GGATC	5 cut(s)	172, 1137, 1755, 2276, 2289
AcoI	YGGCCR	2 cut(s)	3, 237
AcsI	RAATTY	3 cut(s)	1532, 1757, 2084
AcuI	CTGAAG	3 cut(s)	80, 1178, 1389
AcvI	CACGTG	1 cut(s)	2585
AfaI	GTAC	5 cut(s)	219, 229, 305, 841, 1035
AfiI	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1831, 2021
AflIII	ACRYGT	2 cut(s)	568, 2194
AjnI	CCWGG	2 cut(s)	1573, 2242
AjuI	GAANNNNNNNTTGG	6 cut(s)	750, 782, 1377, 1409, 1664, 1696
AleI	CACNNNNGTG	1 cut(s)	1004
AloI	GAACNNNNNNTCC	4 cut(s)	319, 351, 1227, 1259
AluBI	AGCT	8 cut(s)	58, 837, 960, 1472, 1984, 2521, 2570, 2650
AluI	AGCT	8 cut(s)	58, 837, 960, 1472, 1984, 2521, 2570, 2650
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	5 cut(s)	172, 1137, 1755, 2276, 2289
AlwNI	CAGNNNCTG	1 cut(s)	1367
Ama87I	CYCGRG	2 cut(s)	2015, 2418
AoxI	GGCC	9 cut(s)	3, 237, 431, 1072, 1848, 1909, 1957, 2421, 2527
ApaI	GGGCCC	1 cut(s)	1852
ApeKI	GCWGC	1 cut(s)	2650
ApoI	RAATTY	3 cut(s)	1532, 1757, 2084
Asp700I	GAANNNNTTC	1 cut(s)	495
AspA2I	CCTAGG	1 cut(s)	1495
AspLEI	GCGC	2 cut(s)	15, 1799
AspS9I	GGNCC	8 cut(s)	432, 1601, 1848, 1849, 1909, 2326, 2421, 2528
AsuC2I	CCSGG	2 cut(s)	2419, 2420
AsuHPI	GGTGA	5 cut(s)	382, 407, 1589, 2150, 2642
AvaI	CYCGRG	2 cut(s)	2015, 2418
AvaII	GGWCC	2 cut(s)	1601, 2326
AvrII	CCTAGG	1 cut(s)	1495
AxyI	CCTNAGG	1 cut(s)	2211
BaeGI	GKGCMC	2 cut(s)	291, 1852
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2281
BanII	GRGCYC	2 cut(s)	1494, 1852
BarI	GAAGNNNNNNTAC	4 cut(s)	201, 233, 1017, 1049
BauI	CACGAG	1 cut(s)	966
BbrPI	CACGTG	1 cut(s)	2585
BbsI	GAAGAC	2 cut(s)	1681, 2694
BbvI	GCAGC	1 cut(s)	2637
BccI	CCATC	8 cut(s)	423, 530, 629, 1113, 1262, 1726, 1760, 1777
BceAI	ACGGC	3 cut(s)	144, 252, 282
BciT130I	CCWGG	2 cut(s)	1575, 2244
BclI	TGATCA	3 cut(s)	1963, 2155, 2185
BcnI	CCSGG	2 cut(s)	2419, 2420
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	3 cut(s)	384, 1496, 2114
BfmI	CTRYAG	2 cut(s)	667, 2565
BfuAI	ACCTGC	1 cut(s)	1790
BglII	AGATCT	1 cut(s)	2008
BisI	GCNGC	3 cut(s)	48, 2429, 2651
BlnI	CCTAGG	1 cut(s)	1495
BlpI	GCTNAGC	1 cut(s)	2096
BlsI	GCNGC	3 cut(s)	49, 2430, 2652
Bme1390I	CCNGG	4 cut(s)	1575, 2244, 2419, 2420
Bme18I	GGWCC	2 cut(s)	1601, 2326
BmeT110I	CYCGRG	2 cut(s)	2015, 2418
BmgT120I	GGNCC	8 cut(s)	432, 1601, 1848, 1849, 1909, 2326, 2421, 2528
BmiI	GGNNCC	8 cut(s)	195, 434, 1491, 1849, 1850, 1910, 2283, 2328
BmrFI	CCNGG	4 cut(s)	1575, 2244, 2419, 2420
BmsI	GCATC	9 cut(s)	185, 530, 552, 553, 1297, 1348, 1987, 2136, 2458
BpiI	GAAGAC	2 cut(s)	1681, 2694
BplI	GAGNNNNNCTC	2 cut(s)	1855, 1887
BpmI	CTGGAG	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	2096
BpuMI	CCSGG	2 cut(s)	2419, 2420
BsaAI	YACGTR	1 cut(s)	2585
BsaBI	GATNNNNATC	1 cut(s)	169
BsaJI	CCNNGG	8 cut(s)	452, 766, 1081, 1495, 1612, 2016, 2243, 2418
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	5 cut(s)	197, 227, 319, 349, 2685
Bsc4I	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1831, 2021
Bse118I	RCCGGY	3 cut(s)	196, 400, 578
Bse1I	ACTGG	5 cut(s)	225, 780, 942, 1075, 1552
Bse21I	CCTNAGG	1 cut(s)	2211
Bse3DI	GCAATG	2 cut(s)	1214, 2346
Bse8I	GATNNNNATC	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	1575, 2244
BseDI	CCNNGG	8 cut(s)	452, 766, 1081, 1495, 1612, 2016, 2243, 2418
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1831, 2021
BseMI	GCAATG	2 cut(s)	1214, 2346
BseMII	CTCAG	9 cut(s)	353, 369, 473, 671, 1170, 1464, 1851, 2019, 2081
BseNI	ACTGG	5 cut(s)	225, 780, 942, 1075, 1552
BseRI	GAGGAG	4 cut(s)	428, 441, 1337, 1532
BseSI	GKGCMC	2 cut(s)	291, 1852
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	2637
BsgI	GTGCAG	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	9 cut(s)	5, 239, 433, 1074, 1850, 1911, 1959, 2423, 2529
BsiEI	CGRYCG	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	2015, 2418
BsiSI	CCGG	8 cut(s)	32, 89, 197, 401, 410, 424, 579, 2419
BslFI	GGGAC	4 cut(s)	1248, 2131, 2192, 2312
BslI	CCNNNNNNNGG	5 cut(s)	297, 1574, 1613, 1831, 2021
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	4 cut(s)	1248, 2131, 2192, 2312
BsmI	GAATGC	1 cut(s)	2182
BsnI	GGCC	9 cut(s)	5, 239, 433, 1074, 1850, 1911, 1959, 2423, 2529
BsoBI	CYCGRG	2 cut(s)	2015, 2418
Bsp120I	GGGCCC	1 cut(s)	1848
Bsp1286I	GDGCHC	3 cut(s)	291, 1494, 1852
Bsp1720I	GCTNAGC	1 cut(s)	2096
BspANI	GGCC	9 cut(s)	5, 239, 433, 1074, 1850, 1911, 1959, 2423, 2529
BspCNI	CTCAG	9 cut(s)	352, 370, 472, 670, 1171, 1465, 1852, 2018, 2080
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	499, 2188
BspLI	GGNNCC	8 cut(s)	195, 434, 1491, 1849, 1850, 1910, 2283, 2328
BspMI	ACCTGC	1 cut(s)	1790
BspPI	GGATC	5 cut(s)	172, 1137, 1755, 2276, 2289
BsrBI	CCGCTC	1 cut(s)	330
BsrDI	GCAATG	2 cut(s)	1214, 2346
BsrFI	RCCGGY	3 cut(s)	196, 400, 578
BsrI	ACTGG	5 cut(s)	225, 780, 942, 1075, 1552
BssAI	RCCGGY	3 cut(s)	196, 400, 578
BssECI	CCNNGG	8 cut(s)	452, 766, 1081, 1495, 1612, 2016, 2243, 2418
BssNAI	GTATAC	2 cut(s)	1400, 1549
BssSI	CACGAG	1 cut(s)	966
BssT1I	CCWWGG	4 cut(s)	766, 1081, 1495, 1612
Bst1107I	GTATAC	2 cut(s)	1400, 1549
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	2 cut(s)	1575, 2244
Bst6I	CTCTTC	3 cut(s)	204, 1314, 1422
BstBAI	YACGTR	1 cut(s)	2585
BstC8I	GCNNGC	4 cut(s)	198, 421, 580, 912
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	15, 1799
BstMAI	GTCTC	1 cut(s)	767
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 1094
BstNI	CCWGG	2 cut(s)	1575, 2244
BstNSI	RCATGY	2 cut(s)	572, 1145
BstSCI	CCNGG	4 cut(s)	1573, 2242, 2417, 2418
BstSFI	CTRYAG	2 cut(s)	667, 2565
BstSLI	GKGCMC	2 cut(s)	291, 1852
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	2637
BstV2I	GAAGAC	2 cut(s)	1681, 2694
BstX2I	RGATCY	5 cut(s)	164, 1129, 1747, 2008, 2281
BstXI	CCANNNNNNTGG	2 cut(s)	1006, 2525
BstYI	RGATCY	5 cut(s)	164, 1129, 1747, 2008, 2281
BstZ17I	GTATAC	2 cut(s)	1400, 1549
BstZI	CGGCCG	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	2211
BsuRI	GGCC	9 cut(s)	5, 239, 433, 1074, 1850, 1911, 1959, 2423, 2529
BtsI	GCAGTG	1 cut(s)	1880
BtsIMutI	CAGTG	4 cut(s)	665, 949, 1294, 1880
BveI	ACCTGC	1 cut(s)	1790
Cac8I	GCNNGC	4 cut(s)	198, 421, 580, 912
CaiI	CAGNNNCTG	1 cut(s)	1367
CciI	TCATGA	2 cut(s)	499, 2188
CfoI	GCGC	2 cut(s)	15, 1799
Cfr10I	RCCGGY	3 cut(s)	196, 400, 578
Cfr13I	GGNCC	8 cut(s)	432, 1601, 1848, 1849, 1909, 2326, 2421, 2528
Cfr9I	CCCGGG	1 cut(s)	2418
CsiI	ACCWGGT	1 cut(s)	1573
Csp6I	GTAC	5 cut(s)	218, 228, 304, 840, 1034
CviQI	GTAC	5 cut(s)	218, 228, 304, 840, 1034
DraI	TTTAAA	1 cut(s)	1252
EaeI	YGGCCR	2 cut(s)	3, 237
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	3 cut(s)	204, 1314, 1422
EarI	CTCTTC	3 cut(s)	204, 1314, 1422
EciI	GGCGGA	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	4 cut(s)	766, 1081, 1495, 1612
Eco24I	GRGCYC	2 cut(s)	1494, 1852
Eco47I	GGWCC	2 cut(s)	1601, 2326
Eco52I	CGGCCG	1 cut(s)	237
Eco57I	CTGAAG	3 cut(s)	80, 1178, 1389
Eco72I	CACGTG	1 cut(s)	2585
Eco81I	CCTNAGG	1 cut(s)	2211
Eco88I	CYCGRG	2 cut(s)	2015, 2418
EcoO109I	RGGNCCY	2 cut(s)	1848, 1849
EcoRII	CCWGG	2 cut(s)	1573, 2242
EcoT14I	CCWWGG	4 cut(s)	766, 1081, 1495, 1612
EcoT22I	ATGCAT	2 cut(s)	545, 2667
EcoT38I	GRGCYC	2 cut(s)	1494, 1852
ErhI	CCWWGG	4 cut(s)	766, 1081, 1495, 1612
FaqI	GGGAC	4 cut(s)	1248, 2131, 2192, 2312
FauI	CCCGC	1 cut(s)	1824
FauNDI	CATATG	1 cut(s)	1807
FbaI	TGATCA	3 cut(s)	1963, 2155, 2185
FblI	GTMKAC	5 cut(s)	511, 1067, 1399, 1548, 1813
Fnu4HI	GCNGC	3 cut(s)	48, 2429, 2651
FriOI	GRGCYC	2 cut(s)	1494, 1852
Fsp4HI	GCNGC	3 cut(s)	48, 2429, 2651
FspBI	CTAG	3 cut(s)	384, 1496, 2114
FspI	TGCGCA	1 cut(s)	1798
GlaI	GCGC	2 cut(s)	14, 1798
GluI	GCNGC	3 cut(s)	48, 2429, 2651
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	9 cut(s)	5, 239, 433, 1074, 1850, 1911, 1959, 2423, 2529
HapII	CCGG	8 cut(s)	32, 89, 197, 401, 410, 424, 579, 2419
HhaI	GCGC	2 cut(s)	15, 1799
Hin6I	GCGC	2 cut(s)	13, 1797
HinP1I	GCGC	2 cut(s)	13, 1797
HincII	GTYRAC	3 cut(s)	512, 889, 976
HindII	GTYRAC	3 cut(s)	512, 889, 976
HindIII	AAGCTT	1 cut(s)	1982
HinfI	GANTC	9 cut(s)	212, 457, 710, 789, 1193, 1364, 1915, 2236, 2636
HpaI	GTTAAC	1 cut(s)	976
HpaII	CCGG	8 cut(s)	32, 89, 197, 401, 410, 424, 579, 2419
HphI	GGTGA	5 cut(s)	382, 407, 1589, 2150, 2642
Hpy166II	GTNNAC	8 cut(s)	512, 889, 976, 1068, 1400, 1502, 1549, 1814
Hpy188III	TCNNGA	7 cut(s)	500, 1639, 2015, 2189, 2285, 2480, 2507
Hpy8I	GTNNAC	8 cut(s)	512, 889, 976, 1068, 1400, 1502, 1549, 1814
Hpy99I	CGWCG	3 cut(s)	136, 488, 513
HpyCH4IV	ACGT	4 cut(s)	1402, 2194, 2380, 2584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 1094
HpySE526I	ACGT	4 cut(s)	1402, 2194, 2380, 2584
HspAI	GCGC	2 cut(s)	13, 1797
KroI	GCCGGC	2 cut(s)	196, 578
KroNI	GCCGGC	2 cut(s)	198, 580
Ksp22I	TGATCA	3 cut(s)	1963, 2155, 2185
KspAI	GTTAAC	1 cut(s)	976
LmnI	GCTCC	6 cut(s)	193, 327, 1009, 1469, 1489, 1930
Lsp1109I	GCAGC	1 cut(s)	2637
LweI	GCATC	9 cut(s)	185, 530, 552, 553, 1297, 1348, 1987, 2136, 2458
MabI	ACCWGGT	1 cut(s)	1573
MaeI	CTAG	3 cut(s)	384, 1496, 2114
MaeII	ACGT	4 cut(s)	1402, 2194, 2380, 2584
MaeIII	GTNAC	5 cut(s)	736, 1111, 2039, 2413, 2594
MbiI	CCGCTC	1 cut(s)	330
MfeI	CAATTG	1 cut(s)	1679
MflI	RGATCY	5 cut(s)	164, 1129, 1747, 2008, 2281
MhlI	GDGCHC	3 cut(s)	291, 1494, 1852
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	221, 451
MmeI	TCCRAC	4 cut(s)	504, 735, 1971, 2002
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	545, 2667
MroNI	GCCGGC	2 cut(s)	196, 578
MroXI	GAANNNNTTC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2306
MslI	CAYNNNNRTG	4 cut(s)	441, 1004, 2139, 2193
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	8 cut(s)	32, 89, 197, 401, 410, 424, 579, 2419
MspR9I	CCNGG	4 cut(s)	1575, 2244, 2419, 2420
MunI	CAATTG	1 cut(s)	1679
Mva1269I	GAATGC	1 cut(s)	2182
MvaI	CCWGG	2 cut(s)	1575, 2244
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	137, 1094
NaeI	GCCGGC	2 cut(s)	198, 580
NciI	CCSGG	2 cut(s)	2419, 2420
NdeI	CATATG	1 cut(s)	1807
NgoMIV	GCCGGC	2 cut(s)	196, 578
NlaIV	GGNNCC	8 cut(s)	195, 434, 1491, 1849, 1850, 1910, 2283, 2328
NmeAIII	GCCGAG	3 cut(s)	265, 1073, 2449
NmuCI	GTSAC	1 cut(s)	2039
NsbI	TGCGCA	1 cut(s)	1798
NsiI	ATGCAT	2 cut(s)	545, 2667
NspI	RCATGY	2 cut(s)	572, 1145
OliI	CACNNNNGTG	1 cut(s)	1004
PagI	TCATGA	2 cut(s)	499, 2188
PaqCI	CACCTGC	1 cut(s)	1790
PciI	ACATGT	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	2200
PctI	GAATGC	1 cut(s)	2182
PdiI	GCCGGC	2 cut(s)	198, 580
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	7 cut(s)	710, 789, 1193, 1364, 1915, 2236, 2636
PflMI	CCANNNNNTGG	1 cut(s)	1574
PkrI	GCNGC	3 cut(s)	49, 2430, 2652
PleI	GAGTC	2 cut(s)	220, 451
PmaCI	CACGTG	1 cut(s)	2585
PmlI	CACGTG	1 cut(s)	2585
PpsI	GAGTC	2 cut(s)	220, 451
Ppu21I	YACGTR	1 cut(s)	2585
PscI	ACATGT	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	1573, 2242
PspCI	CACGTG	1 cut(s)	2585
PspGI	CCWGG	2 cut(s)	1573, 2242
PspN4I	GGNNCC	8 cut(s)	195, 434, 1491, 1849, 1850, 1910, 2283, 2328
PspOMI	GGGCCC	1 cut(s)	1848
PspPI	GGNCC	8 cut(s)	432, 1601, 1848, 1849, 1909, 2326, 2421, 2528
PsrI	GAACNNNNNNTAC	2 cut(s)	2460, 2492
PstNI	CAGNNNCTG	1 cut(s)	1367
PsuI	RGATCY	5 cut(s)	164, 1129, 1747, 2008, 2281
RsaI	GTAC	5 cut(s)	219, 229, 305, 841, 1035
RsaNI	GTAC	5 cut(s)	218, 228, 304, 840, 1034
RseI	CAYNNNNRTG	4 cut(s)	441, 1004, 2139, 2193
SalI	GTCGAC	1 cut(s)	510
SaqAI	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2306
SatI	GCNGC	3 cut(s)	48, 2429, 2651
Sau96I	GGNCC	8 cut(s)	432, 1601, 1848, 1849, 1909, 2326, 2421, 2528
SchI	GAGTC	2 cut(s)	221, 451
ScrFI	CCNGG	4 cut(s)	1575, 2244, 2419, 2420
SduI	GDGCHC	3 cut(s)	291, 1494, 1852
SexAI	ACCWGGT	1 cut(s)	1573
SfaNI	GCATC	9 cut(s)	185, 530, 552, 553, 1297, 1348, 1987, 2136, 2458
SfcI	CTRYAG	2 cut(s)	667, 2565
SinI	GGWCC	2 cut(s)	1601, 2326
SmaI	CCCGGG	1 cut(s)	2420
SmiMI	CAYNNNNRTG	4 cut(s)	441, 1004, 2139, 2193
SspMI	CTAG	3 cut(s)	384, 1496, 2114
StyD4I	CCNGG	4 cut(s)	1573, 2242, 2417, 2418
StyI	CCWWGG	4 cut(s)	766, 1081, 1495, 1612
TaiI	ACGT	4 cut(s)	1405, 2197, 2383, 2587
TaqI	TCGA	5 cut(s)	20, 105, 296, 511, 702
TatI	WGTACW	2 cut(s)	303, 1033
TauI	GCSGC	2 cut(s)	50, 2431
TfiI	GAWTC	7 cut(s)	710, 789, 1193, 1364, 1915, 2236, 2636
Tru1I	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2306
Tru9I	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1446, 2306
TscAI	CASTG	4 cut(s)	665, 949, 1294, 1887
TseFI	GTSAC	1 cut(s)	2039
TseI	GCWGC	1 cut(s)	2650
Tsp45I	GTSAC	1 cut(s)	2039
TspGWI	ACGGA	4 cut(s)	1795, 1814, 2691, 2706
TspMI	CCCGGG	1 cut(s)	2418
TspRI	CASTG	4 cut(s)	665, 949, 1294, 1887
Van91I	CCANNNNNTGG	1 cut(s)	1574
VpaK11BI	GGWCC	2 cut(s)	1601, 2326
XapI	RAATTY	3 cut(s)	1532, 1757, 2084
XceI	RCATGY	2 cut(s)	572, 1145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1619
XmaI	CCCGGG	1 cut(s)	2418
XmaJI	CCTAGG	1 cut(s)	1495
XmiI	GTMKAC	5 cut(s)	511, 1067, 1399, 1548, 1813
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	3 cut(s)	384, 1496, 2114
Zsp2I	ATGCAT	2 cut(s)	545, 2667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.