Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

781232 .. 787244

Gene Structure 6013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGGCCACCAAGCGCAAGTCGAAGCGATCTCCGGCTTCTTCTTCCGCCGCGAAGAAGCCGAAGCAGGGGGAGAAAGATGTCTTTTTGCCGGAGAGTAGTGAAATCGAAACCGAAACCTCAACGGCGACGAAGGCGAAGCCGAAGCGATCTAAGGCTGGATCTTCATCCGCATCTGCGAAGTTGAAGGAGCCGGCGGTGGAGGAAGAGTCGGTACTGGAGAGTACCGAAACGGCCGAGAAGGTTTCGGAGAGTAGCGAAACGGCTACAATGGAGGCGAGTGTGCCCAAGTCGAGGAAGTACAGTAAGAAGGAGAGTAAGGGGAGTGGTGGTTCTCAGGCTAATAATGTGGCTGATGAGGATGTGGTGATGTCTGAGGCTAGGTTTCTCGGTGAGCCGGTTGAACCGGAGGAGGCTCGCCGGAGATGGCCCCACCGATATGCTACTCCTCCGACTCAGAAGAAGGCAAACAACTCCAACGACGATGAAGATTTTCATGAGGGTCGTCGACACTTCACAAAGGCAGAGGTTGATGGATGCATCTATGATCTTTATGATGATGCACATGTAAAAGCCGGCAAAGGAGAACAGCCTTACATTTGTAAAATTATAGAGATGTTTGAGGCAGTTGATGGGCTACCCTATTTTACTGCTCAGTGGTTCTACAGAGCGAAAGATACTGTCATAGAAGGTTGCTTTGATATTGATTCAAGGCGTGTATTTTATTCAGATGTTACAAATTACAATGAGTTGGAATGTCTCCTTGGGAAACTGGATATTGCGAGATTCGGTTTAGATATTGACCCTGATGTAAAGTGCAAACTGATTGAGAGCTGTACCTATTATTGCGACACTAAATATCTGTTGCCTTATTCCACCTTTGTCAACTTCCCACCTGAAAATGTGCAGGCTGGAAGTGATAACTCATCAACAATTTCCAGTGAGATTGACATTAGCTGTTCTCGTGCGGTTAACTCGGAACTTGAAAAAACTTCCACAGTTGTGGAGCAAGGCAAACCAGAAGCAACTGTACTTGACTTGTATTCTGGTTGTGGAGGGATGTCTACTGGCCTATGCCTTGGGGCAAACTCGGCAAACTTAAATCTTGTTACGAGATGGGCTGTGGATCTGAATGAACATGCTATAAAAAGTCTGAAGATAAACCATGAAGAAACTGAGGTTCGGGTAGAATCTGCGGATGATTTTCTCTCATTGCTGAAAAAGTGGAAGGGACTTTGTGTTCATTTTAAAGTGGTTAAACCTGATGGTTCAGAAACACCGTTCAGTGTATTCACAACAAAAGATGCCAAAGAGGAAGAGGAGGATGTGGAGGCAGAGGATGATGATGATGATGATGATGATGCAGAATCTGAAGTTTATGAAGTTGAAAAAATACTTGGTATACGTTATGGAAAAGCCAAAAATGGAGAAGAGAAGGAATTGTTGTTTAAGGTCAAATGGAAAGGATATGGAGCTGAGTATGATACTTGGGAGCCCCTAGGTTTACTAACGGGTTGTGAGGAGAGCATACAGGAATTTGTTTCTCATGTATACCAGTCCAAACTGTTGCCATTACCTGGTGATGTGGATGTTGTGTGTGGTGGTCCTCCATGCCAAGGAATTAGTGGTTTCAATAGGTTCAGGAACTCTGAAAGTCCATTAGATGACGAGAAGAACAAGCAATTGGCTGTCTTCATGGACATAGTAGATTATCTAAAGCCCAAGTATGTGTTGATGGAAAATGTAGTGGATCTTTTGAAATTTGCTGATGGGTTTTTAGGACGGTATGCTTTGGGAAGGTTAGTTGGAATGAACTACCAAGCAAGGATGGGTATGATGTGCGCAGGTGCATATGGTCTACCTCAATTCCGTATGCGGGTATTTTATTGGGGGGCCCTTCCTACTGAGAGGTTGCCTCAATTCCCACTGCCAACCCATGATGTAGTGTTTAGGGGCCAGATTCCTACTAAGTGGGAGCAAAACTGTGTTGCTTACAATGAAGGCCATGATCATACATTGGGAAGAAAGCTTTTGTTGGAGGATGCACTCTCAGATCTTCCCGAGGTTGGAAACAATGAAAACCGTGACATAATGCCTTACGGAAAGCAACCTCAGACAGAGTTTCAGAAATTTATTCGGCTTAGCAAAGACGGTTTTCTAGGGACTTCAAAGAAGTTGCACTCAAATGAGATGCTTTTTGATCACCGCCCTCTGAAATTGAATGCTGATGATCATGAACGTGTTTGTCGTGTCCCTAAGGAAAAGGGTGCGAACTTTAGGAATCTACCTGGGGTTCTTGTTGGTGCTGATAATAAAGTAATGTGGGATCCAGAAGTAGAGAGGGTTTTATTAAAATCTGGGAAACCTTTGGTCCCTGATTATGCAATGTCATTTGTGAAAGGACATTCATCAAAACCTTTTGGACGTTTATGGTGGGATGAGATTGTTTCCACAGTTGTTACCCGGGCCGAGCCGCATAATCAGGCAATTTTGCATCCTCAACAAGATCGGGTATTGACAGTTCGTGAAAATGCAAGACTACAAGGATTTCCTGACTACTACCAGCTTTCTGGCCCAATCAAAGAGAGATATATGCAAATTGGAAATGCTGTAGCTGTTCCTGTTTCACGTGCATTGGGTTACACATTAGGTTTGGCATATAAGGGTTCTGCTGGTGAGGATTCTTTGTTTGAGCTGCCCAAAGAAATGCATTTGCCTAACGGATGTTTTGAAGACGGAGATTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

915

Amino Acids

102.56

Weight (kDa)

5.16

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	193 - 261	1.9e-07	BAH domain
Chromo	PF00385	459 - 514	2.1e-13	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	523 - 881	2.1e-32	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1832
Acc16I	TGCGCA	1 cut(s)	1840
Acc36I	ACCTGC	1 cut(s)	1832
AccB7I	CCANNNNNTGG	1 cut(s)	1574
AccI	GTMKAC	5 cut(s)	505, 1061, 1399, 1548, 1855
AccII	CGCG	1 cut(s)	50
AciI	CCGC	9 cut(s)	45, 48, 168, 194, 965, 1193, 1873, 2203, 2471
AclWI	GGATC	5 cut(s)	166, 1131, 1755, 2318, 2331
AcoI	YGGCCR	2 cut(s)	3, 231
AcsI	RAATTY	3 cut(s)	1532, 1757, 2126
AcuI	CTGAAG	2 cut(s)	1172, 1389
AcvI	CACGTG	1 cut(s)	2627
AfaI	GTAC	5 cut(s)	213, 223, 299, 835, 1029
AfiI	CCNNNNNNNGG	6 cut(s)	65, 291, 1574, 1613, 1873, 2063
AflIII	ACRYGT	2 cut(s)	562, 2236
AjnI	CCWGG	2 cut(s)	1573, 2284
AjuI	GAANNNNNNNTTGG	6 cut(s)	744, 776, 1377, 1409, 1664, 1696
AleI	CACNNNNGTG	1 cut(s)	998
AloI	GAACNNNNNNTCC	4 cut(s)	313, 345, 1221, 1253
AluBI	AGCT	7 cut(s)	831, 954, 1472, 2026, 2563, 2612, 2692
AluI	AGCT	7 cut(s)	831, 954, 1472, 2026, 2563, 2612, 2692
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	5 cut(s)	166, 1131, 1755, 2318, 2331
AlwNI	CAGNNNCTG	1 cut(s)	1367
Ama87I	CYCGRG	2 cut(s)	2057, 2460
AoxI	GGCC	9 cut(s)	3, 231, 425, 1066, 1890, 1951, 1999, 2463, 2569
ApaI	GGGCCC	1 cut(s)	1894
ApeKI	GCWGC	1 cut(s)	2692
ApoI	RAATTY	3 cut(s)	1532, 1757, 2126
Asp700I	GAANNNNTTC	1 cut(s)	489
AspA2I	CCTAGG	1 cut(s)	1495
AspLEI	GCGC	2 cut(s)	15, 1841
AspS9I	GGNCC	8 cut(s)	426, 1601, 1890, 1891, 1951, 2368, 2463, 2570
AsuC2I	CCSGG	2 cut(s)	2461, 2462
AsuHPI	GGTGA	5 cut(s)	376, 401, 1589, 2192, 2684
AvaI	CYCGRG	2 cut(s)	2057, 2460
AvaII	GGWCC	2 cut(s)	1601, 2368
AvrII	CCTAGG	1 cut(s)	1495
AxyI	CCTNAGG	1 cut(s)	2253
BaeGI	GKGCMC	2 cut(s)	285, 1894
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2323
BanII	GRGCYC	2 cut(s)	1494, 1894
BarI	GAAGNNNNNNTAC	4 cut(s)	195, 227, 1011, 1043
BauI	CACGAG	1 cut(s)	960
BbrPI	CACGTG	1 cut(s)	2627
BbsI	GAAGAC	2 cut(s)	1681, 2736
BbvI	GCAGC	1 cut(s)	2679
BccI	CCATC	8 cut(s)	417, 524, 623, 1107, 1256, 1726, 1760, 1819
BceAI	ACGGC	3 cut(s)	138, 246, 276
BciT130I	CCWGG	2 cut(s)	1575, 2286
BclI	TGATCA	3 cut(s)	2005, 2197, 2227
BcnI	CCSGG	2 cut(s)	2461, 2462
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	3 cut(s)	378, 1496, 2156
BfmI	CTRYAG	2 cut(s)	661, 2607
BfuAI	ACCTGC	1 cut(s)	1832
BglII	AGATCT	1 cut(s)	2050
BisI	GCNGC	3 cut(s)	48, 2471, 2693
BlnI	CCTAGG	1 cut(s)	1495
BlpI	GCTNAGC	1 cut(s)	2138
BlsI	GCNGC	3 cut(s)	49, 2472, 2694
Bme1390I	CCNGG	4 cut(s)	1575, 2286, 2461, 2462
Bme18I	GGWCC	2 cut(s)	1601, 2368
BmeT110I	CYCGRG	2 cut(s)	2057, 2460
BmgT120I	GGNCC	8 cut(s)	426, 1601, 1890, 1891, 1951, 2368, 2463, 2570
BmiI	GGNNCC	8 cut(s)	189, 428, 1491, 1891, 1892, 1952, 2325, 2370
BmrFI	CCNGG	4 cut(s)	1575, 2286, 2461, 2462
BmsI	GCATC	9 cut(s)	179, 524, 546, 547, 1291, 1348, 2029, 2178, 2500
BpiI	GAAGAC	2 cut(s)	1681, 2736
BplI	GAGNNNNNCTC	2 cut(s)	1897, 1929
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	2138
BpuMI	CCSGG	2 cut(s)	2461, 2462
BsaAI	YACGTR	1 cut(s)	2627
BsaBI	GATNNNNATC	1 cut(s)	163
BsaJI	CCNNGG	7 cut(s)	760, 1075, 1495, 1612, 2058, 2285, 2460
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	5 cut(s)	191, 221, 313, 343, 2727
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 291, 1574, 1613, 1873, 2063
Bse118I	RCCGGY	3 cut(s)	190, 394, 572
Bse1I	ACTGG	5 cut(s)	219, 774, 936, 1069, 1552
Bse21I	CCTNAGG	1 cut(s)	2253
Bse3DI	GCAATG	2 cut(s)	1208, 2388
Bse8I	GATNNNNATC	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	1575, 2286
BseDI	CCNNGG	7 cut(s)	760, 1075, 1495, 1612, 2058, 2285, 2460
BseJI	GATNNNNATC	1 cut(s)	163
BseLI	CCNNNNNNNGG	6 cut(s)	65, 291, 1574, 1613, 1873, 2063
BseMI	GCAATG	2 cut(s)	1208, 2388
BseMII	CTCAG	9 cut(s)	347, 363, 467, 665, 1164, 1464, 1893, 2061, 2123
BseNI	ACTGG	5 cut(s)	219, 774, 936, 1069, 1552
BseRI	GAGGAG	4 cut(s)	422, 435, 1331, 1532
BseSI	GKGCMC	2 cut(s)	285, 1894
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	2679
BsgI	GTGCAG	1 cut(s)	923
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	9 cut(s)	5, 233, 427, 1068, 1892, 1953, 2001, 2465, 2571
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	2 cut(s)	2057, 2460
BsiSI	CCGG	8 cut(s)	32, 89, 191, 395, 404, 418, 573, 2461
BslFI	GGGAC	4 cut(s)	1242, 2173, 2234, 2354
BslI	CCNNNNNNNGG	6 cut(s)	65, 291, 1574, 1613, 1873, 2063
BsmAI	GTCTC	1 cut(s)	761
BsmFI	GGGAC	4 cut(s)	1242, 2173, 2234, 2354
BsmI	GAATGC	1 cut(s)	2224
BsnI	GGCC	9 cut(s)	5, 233, 427, 1068, 1892, 1953, 2001, 2465, 2571
BsoBI	CYCGRG	2 cut(s)	2057, 2460
Bsp120I	GGGCCC	1 cut(s)	1890
Bsp1286I	GDGCHC	3 cut(s)	285, 1494, 1894
Bsp1720I	GCTNAGC	1 cut(s)	2138
BspACI	CCGC	9 cut(s)	45, 48, 168, 194, 965, 1193, 1873, 2203, 2471
BspANI	GGCC	9 cut(s)	5, 233, 427, 1068, 1892, 1953, 2001, 2465, 2571
BspCNI	CTCAG	9 cut(s)	346, 364, 466, 664, 1165, 1465, 1894, 2060, 2122
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	493, 2230
BspLI	GGNNCC	8 cut(s)	189, 428, 1491, 1891, 1892, 1952, 2325, 2370
BspMI	ACCTGC	1 cut(s)	1832
BspPI	GGATC	5 cut(s)	166, 1131, 1755, 2318, 2331
BsrDI	GCAATG	2 cut(s)	1208, 2388
BsrFI	RCCGGY	3 cut(s)	190, 394, 572
BsrI	ACTGG	5 cut(s)	219, 774, 936, 1069, 1552
BssAI	RCCGGY	3 cut(s)	190, 394, 572
BssECI	CCNNGG	7 cut(s)	760, 1075, 1495, 1612, 2058, 2285, 2460
BssNAI	GTATAC	2 cut(s)	1400, 1549
BssSI	CACGAG	1 cut(s)	960
BssT1I	CCWWGG	4 cut(s)	760, 1075, 1495, 1612
Bst1107I	GTATAC	2 cut(s)	1400, 1549
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	2 cut(s)	1575, 2286
Bst6I	CTCTTC	3 cut(s)	198, 1308, 1422
BstBAI	YACGTR	1 cut(s)	2627
BstC8I	GCNNGC	4 cut(s)	192, 415, 574, 906
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	15, 1841
BstMAI	GTCTC	1 cut(s)	761
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 1088
BstNI	CCWGG	2 cut(s)	1575, 2286
BstNSI	RCATGY	2 cut(s)	566, 1139
BstSCI	CCNGG	4 cut(s)	1573, 2284, 2459, 2460
BstSFI	CTRYAG	2 cut(s)	661, 2607
BstSLI	GKGCMC	2 cut(s)	285, 1894
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	2679
BstV2I	GAAGAC	2 cut(s)	1681, 2736
BstX2I	RGATCY	5 cut(s)	158, 1123, 1747, 2050, 2323
BstXI	CCANNNNNNTGG	2 cut(s)	1000, 2567
BstYI	RGATCY	5 cut(s)	158, 1123, 1747, 2050, 2323
BstZ17I	GTATAC	2 cut(s)	1400, 1549
BstZI	CGGCCG	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	2253
BsuRI	GGCC	9 cut(s)	5, 233, 427, 1068, 1892, 1953, 2001, 2465, 2571
BtsI	GCAGTG	1 cut(s)	1922
BtsIMutI	CAGTG	4 cut(s)	659, 943, 1288, 1922
BveI	ACCTGC	1 cut(s)	1832
Cac8I	GCNNGC	4 cut(s)	192, 415, 574, 906
CaiI	CAGNNNCTG	1 cut(s)	1367
CciI	TCATGA	2 cut(s)	493, 2230
CfoI	GCGC	2 cut(s)	15, 1841
Cfr10I	RCCGGY	3 cut(s)	190, 394, 572
Cfr13I	GGNCC	8 cut(s)	426, 1601, 1890, 1891, 1951, 2368, 2463, 2570
Cfr9I	CCCGGG	1 cut(s)	2460
CsiI	ACCWGGT	1 cut(s)	1573
Csp6I	GTAC	5 cut(s)	212, 222, 298, 834, 1028
CviQI	GTAC	5 cut(s)	212, 222, 298, 834, 1028
DraI	TTTAAA	1 cut(s)	1246
EaeI	YGGCCR	2 cut(s)	3, 231
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	3 cut(s)	198, 1308, 1422
EarI	CTCTTC	3 cut(s)	198, 1308, 1422
EciI	GGCGGA	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	4 cut(s)	760, 1075, 1495, 1612
Eco24I	GRGCYC	2 cut(s)	1494, 1894
Eco47I	GGWCC	2 cut(s)	1601, 2368
Eco52I	CGGCCG	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	1172, 1389
Eco72I	CACGTG	1 cut(s)	2627
Eco81I	CCTNAGG	1 cut(s)	2253
Eco88I	CYCGRG	2 cut(s)	2057, 2460
EcoO109I	RGGNCCY	2 cut(s)	1890, 1891
EcoRII	CCWGG	2 cut(s)	1573, 2284
EcoT14I	CCWWGG	4 cut(s)	760, 1075, 1495, 1612
EcoT22I	ATGCAT	2 cut(s)	539, 2709
EcoT38I	GRGCYC	2 cut(s)	1494, 1894
ErhI	CCWWGG	4 cut(s)	760, 1075, 1495, 1612
FaqI	GGGAC	4 cut(s)	1242, 2173, 2234, 2354
FauI	CCCGC	1 cut(s)	1866
FauNDI	CATATG	1 cut(s)	1849
FbaI	TGATCA	3 cut(s)	2005, 2197, 2227
FblI	GTMKAC	5 cut(s)	505, 1061, 1399, 1548, 1855
Fnu4HI	GCNGC	3 cut(s)	48, 2471, 2693
FriOI	GRGCYC	2 cut(s)	1494, 1894
Fsp4HI	GCNGC	3 cut(s)	48, 2471, 2693
FspBI	CTAG	3 cut(s)	378, 1496, 2156
FspI	TGCGCA	1 cut(s)	1840
GlaI	GCGC	2 cut(s)	14, 1840
GluI	GCNGC	3 cut(s)	48, 2471, 2693
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	9 cut(s)	5, 233, 427, 1068, 1892, 1953, 2001, 2465, 2571
HapII	CCGG	8 cut(s)	32, 89, 191, 395, 404, 418, 573, 2461
HhaI	GCGC	2 cut(s)	15, 1841
Hin6I	GCGC	2 cut(s)	13, 1839
HinP1I	GCGC	2 cut(s)	13, 1839
HincII	GTYRAC	3 cut(s)	506, 883, 970
HindII	GTYRAC	3 cut(s)	506, 883, 970
HindIII	AAGCTT	1 cut(s)	2024
HinfI	GANTC	9 cut(s)	206, 451, 704, 783, 1187, 1364, 1957, 2278, 2678
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	8 cut(s)	32, 89, 191, 395, 404, 418, 573, 2461
HphI	GGTGA	5 cut(s)	376, 401, 1589, 2192, 2684
Hpy166II	GTNNAC	8 cut(s)	506, 883, 970, 1062, 1400, 1502, 1549, 1856
Hpy188III	TCNNGA	7 cut(s)	494, 1639, 2057, 2231, 2327, 2522, 2549
Hpy8I	GTNNAC	8 cut(s)	506, 883, 970, 1062, 1400, 1502, 1549, 1856
Hpy99I	CGWCG	3 cut(s)	130, 482, 507
HpyCH4IV	ACGT	4 cut(s)	1402, 2236, 2422, 2626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 1088
HpySE526I	ACGT	4 cut(s)	1402, 2236, 2422, 2626
HspAI	GCGC	2 cut(s)	13, 1839
KroI	GCCGGC	2 cut(s)	190, 572
KroNI	GCCGGC	2 cut(s)	192, 574
Ksp22I	TGATCA	3 cut(s)	2005, 2197, 2227
KspAI	GTTAAC	1 cut(s)	970
LmnI	GCTCC	5 cut(s)	187, 1003, 1469, 1489, 1972
Lsp1109I	GCAGC	1 cut(s)	2679
LweI	GCATC	9 cut(s)	179, 524, 546, 547, 1291, 1348, 2029, 2178, 2500
MabI	ACCWGGT	1 cut(s)	1573
MaeI	CTAG	3 cut(s)	378, 1496, 2156
MaeII	ACGT	4 cut(s)	1402, 2236, 2422, 2626
MaeIII	GTNAC	5 cut(s)	730, 1105, 2081, 2455, 2636
MfeI	CAATTG	1 cut(s)	1679
MflI	RGATCY	5 cut(s)	158, 1123, 1747, 2050, 2323
MhlI	GDGCHC	3 cut(s)	285, 1494, 1894
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	215, 445
MmeI	TCCRAC	6 cut(s)	473, 498, 729, 1783, 2013, 2044
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	539, 2709
MroNI	GCCGGC	2 cut(s)	190, 572
MroXI	GAANNNNTTC	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	969, 1097, 1245, 1254, 1446, 2348
MslI	CAYNNNNRTG	4 cut(s)	435, 998, 2181, 2235
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	8 cut(s)	32, 89, 191, 395, 404, 418, 573, 2461
MspR9I	CCNGG	4 cut(s)	1575, 2286, 2461, 2462
MunI	CAATTG	1 cut(s)	1679
Mva1269I	GAATGC	1 cut(s)	2224
MvaI	CCWGG	2 cut(s)	1575, 2286
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	131, 1088
NaeI	GCCGGC	2 cut(s)	192, 574
NciI	CCSGG	2 cut(s)	2461, 2462
NdeI	CATATG	1 cut(s)	1849
NgoMIV	GCCGGC	2 cut(s)	190, 572
NlaIV	GGNNCC	8 cut(s)	189, 428, 1491, 1891, 1892, 1952, 2325, 2370
NmeAIII	GCCGAG	3 cut(s)	259, 1067, 2491
NmuCI	GTSAC	1 cut(s)	2081
NsbI	TGCGCA	1 cut(s)	1840
NsiI	ATGCAT	2 cut(s)	539, 2709
NspI	RCATGY	2 cut(s)	566, 1139
OliI	CACNNNNGTG	1 cut(s)	998
PagI	TCATGA	2 cut(s)	493, 2230
PaqCI	CACCTGC	1 cut(s)	1832
PciI	ACATGT	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	2242
PctI	GAATGC	1 cut(s)	2224
PdiI	GCCGGC	2 cut(s)	192, 574
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	7 cut(s)	704, 783, 1187, 1364, 1957, 2278, 2678
PflMI	CCANNNNNTGG	1 cut(s)	1574
PkrI	GCNGC	3 cut(s)	49, 2472, 2694
PleI	GAGTC	2 cut(s)	214, 445
PmaCI	CACGTG	1 cut(s)	2627
PmlI	CACGTG	1 cut(s)	2627
PpsI	GAGTC	2 cut(s)	214, 445
Ppu21I	YACGTR	1 cut(s)	2627
PscI	ACATGT	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	1573, 2284
PspCI	CACGTG	1 cut(s)	2627
PspGI	CCWGG	2 cut(s)	1573, 2284
PspN4I	GGNNCC	8 cut(s)	189, 428, 1491, 1891, 1892, 1952, 2325, 2370
PspOMI	GGGCCC	1 cut(s)	1890
PspPI	GGNCC	8 cut(s)	426, 1601, 1890, 1891, 1951, 2368, 2463, 2570
PsrI	GAACNNNNNNTAC	2 cut(s)	2502, 2534
PstNI	CAGNNNCTG	1 cut(s)	1367
PsuI	RGATCY	5 cut(s)	158, 1123, 1747, 2050, 2323
RsaI	GTAC	5 cut(s)	213, 223, 299, 835, 1029
RsaNI	GTAC	5 cut(s)	212, 222, 298, 834, 1028
RseI	CAYNNNNRTG	4 cut(s)	435, 998, 2181, 2235
SalI	GTCGAC	1 cut(s)	504
SaqAI	TTAA	6 cut(s)	969, 1097, 1245, 1254, 1446, 2348
SatI	GCNGC	3 cut(s)	48, 2471, 2693
Sau96I	GGNCC	8 cut(s)	426, 1601, 1890, 1891, 1951, 2368, 2463, 2570
SchI	GAGTC	2 cut(s)	215, 445
ScrFI	CCNGG	4 cut(s)	1575, 2286, 2461, 2462
SduI	GDGCHC	3 cut(s)	285, 1494, 1894
SexAI	ACCWGGT	1 cut(s)	1573
SfaNI	GCATC	9 cut(s)	179, 524, 546, 547, 1291, 1348, 2029, 2178, 2500
SfcI	CTRYAG	2 cut(s)	661, 2607
SinI	GGWCC	2 cut(s)	1601, 2368
SmaI	CCCGGG	1 cut(s)	2462
SmiMI	CAYNNNNRTG	4 cut(s)	435, 998, 2181, 2235
SsiI	CCGC	9 cut(s)	45, 48, 168, 194, 965, 1193, 1873, 2203, 2471
SspMI	CTAG	3 cut(s)	378, 1496, 2156
StyD4I	CCNGG	4 cut(s)	1573, 2284, 2459, 2460
StyI	CCWWGG	4 cut(s)	760, 1075, 1495, 1612
TaiI	ACGT	4 cut(s)	1405, 2239, 2425, 2629
TaqI	TCGA	4 cut(s)	20, 105, 290, 505
TatI	WGTACW	2 cut(s)	297, 1027
TauI	GCSGC	2 cut(s)	50, 2473
TfiI	GAWTC	7 cut(s)	704, 783, 1187, 1364, 1957, 2278, 2678
Tru1I	TTAA	6 cut(s)	969, 1097, 1245, 1254, 1446, 2348
Tru9I	TTAA	6 cut(s)	969, 1097, 1245, 1254, 1446, 2348
TscAI	CASTG	4 cut(s)	659, 943, 1288, 1929
TseFI	GTSAC	1 cut(s)	2081
TseI	GCWGC	1 cut(s)	2692
Tsp45I	GTSAC	1 cut(s)	2081
TspGWI	ACGGA	4 cut(s)	1856, 2112, 2733, 2748
TspMI	CCCGGG	1 cut(s)	2460
TspRI	CASTG	4 cut(s)	659, 943, 1288, 1929
Van91I	CCANNNNNTGG	1 cut(s)	1574
VpaK11BI	GGWCC	2 cut(s)	1601, 2368
XapI	RAATTY	3 cut(s)	1532, 1757, 2126
XceI	RCATGY	2 cut(s)	566, 1139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1619
XmaI	CCCGGG	1 cut(s)	2460
XmaJI	CCTAGG	1 cut(s)	1495
XmiI	GTMKAC	5 cut(s)	505, 1061, 1399, 1548, 1855
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	3 cut(s)	378, 1496, 2156
Zsp2I	ATGCAT	2 cut(s)	539, 2709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.